mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 917 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,209,858 | 0 | T | G | 56.2% | 7.1 / 17.8 | 16 | intergenic (+9/‑185) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon |
| * | NC_000913 | 357,890 | 0 | C | A | 52.1% | 48.9 / 114.0 | 71 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,206,435 | 0 | C | T | 51.1% | 50.1 / 136.2 | 92 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 357,880 | 0 | T | C | 48.6% | 82.8 / 26.8 | 70 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 802,118 | 0 | A | C | 45.4% | 166.0 / 19.1 | 97 | T78P (ACC→CCC) | ybhI | putative DASS family tricarboxylate or dicarboxylate transporter |
| * | NC_000913 | 1,376,505 | 0 | A | C | 45.1% | 171.0 / 21.4 | 103 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 599,576 | 0 | T | G | 44.0% | 166.6 / 44.4 | 101 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 2,624,503 | 0 | T | G | 43.6% | 171.5 / 17.2 | 103 | V487G (GTA→GGA) | ppk | polyphosphate kinase, component of RNA degradosome |
| * | NC_000913 | 1,684,749 | 0 | A | C | 43.3% | 157.4 / 19.1 | 98 | D164A (GAC→GCC) | tus | inhibitor of replication at Ter, DNA‑binding protein |
| * | NC_000913 | 3,133,302 | 0 | T | G | 43.3% | 180.5 / 15.6 | 104 | H219P (CAC→CCC) | yghS | putative ATP‑binding protein |
| * | NC_000913 | 2,231,444 | 0 | T | G | 42.5% | 178.4 / 12.8 | 94 | G142G (GGT→GGG) | yohK | LrgB family inner membrane protein |
| * | NC_000913 | 1,356,201 | 0 | T | G | 42.5% | 150.0 / 25.5 | 87 | T304P (ACC→CCC) | sapA | antimicrobial peptide transport ABC transporter periplasmic binding protein |
| * | NC_000913 | 357,873 | 0 | C | T | 42.5% | 105.2 / 41.0 | 80 | S273N (AGC→AAC) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 907,602 | 0 | A | C | 42.4% | 145.3 / 20.4 | 86 | G227G (GGT→GGG) | ybjT | putative NAD‑dependent oxidoreductase |
| * | NC_000913 | 213,341 | 0 | A | G | 42.3% | 147.5 / 42.7 | 104 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 1,986,995 | 0 | A | C | 42.2% | 186.4 / 23.2 | 103 | Y24S (TAC→TCC) | ftnB | ferritin B, putative ferrous iron reservoir |
| * | NC_000913 | 3,443,277 | 0 | A | C | 42.0% | 169.1 / 25.7 | 88 | V274G (GTA→GGA) | secY | preprotein translocase membrane subunit |
| * | NC_000913 | 3,995,457 | 0 | T | G | 41.9% | 169.7 / 19.5 | 93 | G232G (GGT→GGG) | dapF | diaminopimelate epimerase |
| * | NC_000913 | 3,423,297 | 0 | G | C | 41.8% | 149.3 / 51.1 | 98 | intergenic (+103/+126) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| * | NC_000913 | 941,713 | 0 | T | G | 41.8% | 128.7 / 34.7 | 79 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4398113 | 80 (0.800) | 11 (0.110) +ACGCT |
3/270 | 19.9 | 11.8% | coding (702/1848 nt) | mutL | methyl‑directed mismatch repair protein |
| ? | NC_000913 | 4398114 = | 85 (0.800) | coding (703/1848 nt) | mutL | methyl‑directed mismatch repair protein | |||||