mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 93 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 1226106 = | 41 (1.210) | 6 (0.190) | 6/264 | 3.3 | 14.2% | intergenic (‑26/‑494) | minC/ycgJ | inhibitor of FtsZ ring polymerization/uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | 1226128 = | 34 (1.070) | intergenic (‑48/‑472) | minC/ycgJ | inhibitor of FtsZ ring polymerization/uncharacterized protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4385328 = | 46 (1.360) | 6 (0.180) | 6/278 | 3.4 | 11.5% | intergenic (+5/‑47) | yjeM/yjeN | putative transporter/uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | 4385359 = | 47 (1.400) | intergenic (+36/‑16) | yjeM/yjeN | putative transporter/uncharacterized protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2729630 = | NA (NA) | 8 (0.250) | 6/270 | 3.4 | NA | noncoding (1528/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_hsa_tpiA | 2729652 = | NA (NA) | noncoding (1506/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1028374 | NA (NA) | 6 (0.200) | 5/252 | 3.5 | NA | noncoding (9/24 nt) | REP88 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP88 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 1028380 | NA (NA) | noncoding (15/24 nt) | REP88 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP88 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3815858 | 31 (0.920) | 7 (0.220) | 5/260 | 3.6 | 22.3% | pseudogene (24/48 nt) | rph | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| ? | NC_000913_3_hsa_tpiA | 3815941 = | 20 (0.640) | pseudogene (609/669 nt) | rph | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3614829 | 32 (0.940) | 5 (0.160) | 5/266 | 3.7 | 14.6% | coding (1163/1575 nt) | nikA | nickel/heme ABC transporter periplasmic binding protein |
| ? | NC_000913_3_hsa_tpiA | = 3614832 | 28 (0.870) | coding (1166/1575 nt) | nikA | nickel/heme ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3596422 = | 23 (0.680) | 5 (0.160) | 5/266 | 3.7 | 17.3% | intergenic (‑19/+29) | livH/livK | branched‑chain amino acid ABC transporter permease/leucine transporter subunit |
| ? | NC_000913_3_hsa_tpiA | 3596443 = | 26 (0.810) | intergenic (‑40/+8) | livH/livK | branched‑chain amino acid ABC transporter permease/leucine transporter subunit | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1137089 = | 38 (1.120) | 5 (0.150) | 5/268 | 3.7 | 11.8% | coding (816/1098 nt) | flgI | putative flagellar basal body protein |
| ? | NC_000913_3_hsa_tpiA | 1137105 = | 38 (1.170) | coding (832/1098 nt) | flgI | putative flagellar basal body protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 224059 = | NA (NA) | 6 (0.190) | 5/266 | 3.7 | NA | noncoding (289/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | 224082 = | NA (NA) | noncoding (312/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4542664 = | 21 (0.620) | 4 (0.130) | 4/262 | 4.0 | 16.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_hsa_tpiA | 4542978 = | 21 (0.660) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||