mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,307,272 | 0 | T | C | 31.6% | 13.1 / 10.9 | 19 | G170G (GGA→GGG) | alsK | D‑allose kinase |
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 26.3% | 57.0 / 15.9 | 38 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_hsa_tpiA | 4,307,276 | 0 | A | T | 25.0% | 23.4 / 11.5 | 21 | L169Q (CTG→CAG) | alsK | D‑allose kinase |
| Marginal new junction evidence (lowest skew 10 of 37 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 4555343 = | 22 (0.920) | 4 (0.180) | 4/266 | 2.6 | 17.6% | intergenic (+12/+129) | uxuR/yjiC | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | 4555372 = | 17 (0.770) | intergenic (+41/+100) | uxuR/yjiC | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3782597 | 21 (0.880) | 4 (0.180) | 4/270 | 2.6 | 15.7% | intergenic (‑35/+45) | cysE/gpsA | serine acetyltransferase/glycerol‑3‑phosphate dehydrogenase (NAD+) |
| ? | NC_000913_3_hsa_tpiA | = 3782604 | 23 (1.020) | intergenic (‑42/+38) | cysE/gpsA | serine acetyltransferase/glycerol‑3‑phosphate dehydrogenase (NAD+) | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1665225 | 19 (0.800) | 4 (0.180) | 4/268 | 2.6 | 17.5% | intergenic (+105/‑90) | dmsD/clcB | twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter |
| ? | NC_000913_3_hsa_tpiA | = 1665236 | 20 (0.900) | intergenic (+116/‑79) | dmsD/clcB | twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1373284 | 19 (0.800) | 4 (0.180) | 4/270 | 2.6 | 17.4% | coding (63/882 nt) | ycjO | putative sugar ABC transporter permease |
| ? | NC_000913_3_hsa_tpiA | = 1373292 | 20 (0.890) | coding (71/882 nt) | ycjO | putative sugar ABC transporter permease | |||||
| * | ? | NC_000913_3_hsa_tpiA | 263238 = | 30 (1.260) | 4 (0.180) | 4/270 | 2.6 | 12.2% | intergenic (‑26/+90) | ykfN/ykfI | pseudogene, YdiA family/CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913_3_hsa_tpiA | 263263 = | 29 (1.290) | intergenic (‑51/+65) | ykfN/ykfI | pseudogene, YdiA family/CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4271668 = | 32 (1.340) | 4 (0.180) | 4/272 | 2.7 | 13.5% | coding (2186/2823 nt) | uvrA | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| ? | NC_000913_3_hsa_tpiA | 4271755 = | 21 (0.930) | coding (2099/2823 nt) | uvrA | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3570877 | 30 (1.260) | 4 (0.180) | 4/274 | 2.7 | 11.6% | coding (443/1974 nt) | glgX | glycogen debranching enzyme |
| ? | NC_000913_3_hsa_tpiA | = 3570891 | 32 (1.400) | coding (429/1974 nt) | glgX | glycogen debranching enzyme | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3190438 = | 21 (0.880) | 4 (0.180) | 4/274 | 2.7 | 17.3% | coding (558/750 nt) | yqiH | putative periplasmic pilin chaperone |
| ? | NC_000913_3_hsa_tpiA | 3190453 = | 18 (0.790) | coding (573/750 nt) | yqiH | putative periplasmic pilin chaperone | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4519284 = | 27 (1.130) | 3 (0.130) | 3/268 | 3.0 | 11.1% | intergenic (+78/+36) | insB1/yjhU | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element |
| ? | NC_000913_3_hsa_tpiA | 4519308 = | 23 (1.030) | intergenic (+102/+12) | insB1/yjhU | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4271003 = | 20 (0.840) | 3 (0.130) | 3/268 | 3.0 | 12.8% | intergenic (+7/+28) | yjbR/uvrA | DUF419 family protein/ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| ? | NC_000913_3_hsa_tpiA | 4271026 = | 22 (0.980) | intergenic (+30/+5) | yjbR/uvrA | DUF419 family protein/ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | |||||