mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 41 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1468681 | NA (NA) | 10 (0.490) +44 bp |
3/202 | 3.0 | 33.2% | coding (146/906 nt) | insD1 | IS2 transposase TnpB |
| ? | NC_000913_3_pae_tpiA | 1650843 = | 29 (0.980) | intergenic (+1/‑2) | ydfE/insD1 | Qin prophage; pseudogene;Phage or Prophage Related/IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related | |||||
| * | ? | NC_000913_3_pae_tpiA | 3470277 = | NA (NA) | 5 (0.180) | 5/276 | 3.2 | NA | coding (1053/1185 nt) | tufA | translation elongation factor EF‑Tu 1 |
| ? | NC_000913_3_pae_tpiA | 3470311 = | NA (NA) | coding (1019/1185 nt) | tufA | translation elongation factor EF‑Tu 1 | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4542606 | 26 (0.880) | 4 (0.140) | 4/272 | 3.5 | 13.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | = 4542902 | 26 (0.940) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | = 377527 | NA (NA) | 4 (0.140) | 4/274 | 3.5 | 10.8% | intergenic (+216/+8) | yaiL/frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
| ? | NC_000913_3_pae_tpiA | = 377605 | 35 (1.190) | coding (764/834 nt) | frmB | S‑formylglutathione hydrolase | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4051966 | 67 (2.270) | 4 (0.140) | 4/282 | 3.6 | 5.4% | intergenic (+110/‑79) | yihI/hemN | activator of Der GTPase/coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent |
| ? | NC_000913_3_pae_tpiA | = 4052012 | 75 (2.620) | intergenic (+156/‑33) | yihI/hemN | activator of Der GTPase/coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent | |||||
| * | ? | NC_000913_3_pae_tpiA | 2472316 = | 36 (1.220) | 4 (0.140) | 4/280 | 3.6 | 10.2% | pseudogene (72/270 nt) | yfdM | CPS‑53 (KpLE1) prophage; putative methyltransferase;Phage or Prophage Related |
| ? | NC_000913_3_pae_tpiA | 2472340 = | 36 (1.260) | pseudogene (48/270 nt) | yfdM | CPS‑53 (KpLE1) prophage; putative methyltransferase;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | 2440343 = | NA (NA) | 4 (0.140) | 4/278 | 3.6 | NA | noncoding (1/36 nt) | REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_pae_tpiA | 2440375 = | NA (NA) | noncoding (33/36 nt) | REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3700152 | 36 (1.220) | 4 (0.140) | 4/288 | 3.7 | 10.6% | noncoding (17/66 nt) | rdlD | sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR‑D repeat, with toxic peptide LdrD |
| ? | NC_000913_3_pae_tpiA | = 3700196 | 32 (1.090) | noncoding (61/66 nt) | rdlD | sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR‑D repeat, with toxic peptide LdrD | |||||
| * | ? | NC_000913_3_pae_tpiA | 2456281 = | 42 (1.420) | 3 (0.110) | 3/260 | 3.8 | 7.8% | intergenic (‑635/+46) | yfcV/sixA | putative fimbrial‑like adhesin protein/phosphohistidine phosphatase |
| ? | NC_000913_3_pae_tpiA | 2456318 = | 33 (1.250) | intergenic (‑672/+9) | yfcV/sixA | putative fimbrial‑like adhesin protein/phosphohistidine phosphatase | |||||
| * | ? | NC_000913_3_pae_tpiA | 3418147 = | 23 (0.780) | 3 (0.110) | 3/274 | 4.0 | 12.6% | intergenic (+10/‑243) | acrF/yhdV | multidrug efflux system protein/putative outer membrane protein |
| ? | NC_000913_3_pae_tpiA | 3418173 = | 20 (0.720) | intergenic (+36/‑217) | acrF/yhdV | multidrug efflux system protein/putative outer membrane protein | |||||