mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 20.0% | 81.0 / 14.8 | 52 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 37 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 1207790 = | 33 (0.910) | 5 (0.150) | 5/248 | 3.8 | 13.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 1209619 = | 33 (1.020) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | 4542598 = | 15 (0.410) | 5 (0.150) | 5/262 | 4.0 | 23.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | 4542912 = | 18 (0.530) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | = 382211 | NA (NA) | 5 (0.140) | 5/270 | 4.1 | NA | coding (538/906 nt) | insD1 | IS2 transposase TnpB |
| ? | NC_000913_3_pae_tpiA | = 382218 | NA (NA) | coding (545/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4542606 | 16 (0.440) | 4 (0.120) | 4/262 | 4.5 | 20.0% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | = 4542902 | 17 (0.500) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | 1477604 = | 27 (0.740) | 4 (0.120) | 4/264 | 4.5 | 13.2% | intergenic (+154/‑17) | ydbD/ynbA | PF10971 family putative periplasmic methylglyoxal resistance protein/inner membrane protein |
| ? | NC_000913_3_pae_tpiA | 1477623 = | 27 (0.790) | coding (3/606 nt) | ynbA | inner membrane protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4511425 | 41 (1.120) | 5 (0.140) | 4/270 | 4.6 | 11.3% | coding (906/957 nt) | fecD | ferric citrate ABC transporter permease |
| ? | NC_000913_3_pae_tpiA | = 4511432 | 39 (1.110) | coding (899/957 nt) | fecD | ferric citrate ABC transporter permease | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1160059 | 43 (1.180) | 4 (0.110) | 4/272 | 4.6 | 8.9% | coding (1493/2190 nt) | fhuE | ferric‑rhodotorulic acid outer membrane transporter |
| ? | NC_000913_3_pae_tpiA | = 1160079 | 40 (1.130) | coding (1473/2190 nt) | fhuE | ferric‑rhodotorulic acid outer membrane transporter | |||||
| * | ? | NC_000913_3_pae_tpiA | = 867463 | 37 (1.010) | 4 (0.110) | 4/268 | 4.6 | 10.3% | coding (896/966 nt) | iaaA | Isoaspartyl peptidase |
| ? | NC_000913_3_pae_tpiA | = 867471 | 34 (0.970) | coding (904/966 nt) | iaaA | Isoaspartyl peptidase | |||||
| * | ? | NC_000913_3_pae_tpiA | 2474868 = | 30 (0.820) | 4 (0.110) | 4/280 | 4.7 | 11.9% | intergenic (+12/‑116) | yfdQ/yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| ? | NC_000913_3_pae_tpiA | 2474892 = | 29 (0.800) | intergenic (+36/‑92) | yfdQ/yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein | |||||
| * | ? | NC_000913_3_pae_tpiA | 3600976 = | 35 (0.960) | 3 (0.090) | 3/256 | 4.9 | 8.3% | intergenic (‑193/+52) | rpoH/ftsX | RNA polymerase, sigma 32 (sigma H) factor/putative ABC transporter permease |
| ? | NC_000913_3_pae_tpiA | 3601013 = | 34 (1.020) | intergenic (‑230/+15) | rpoH/ftsX | RNA polymerase, sigma 32 (sigma H) factor/putative ABC transporter permease | |||||