mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 34.2% | 35.7 / 24.0 | 38 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 69 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 4070452 = | 75 (2.350) | 9 (0.290) | 9/274 | 2.4 | 11.4% | intergenic (‑51/+63) | yihR/yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| ? | NC_000913_3_pae_tpiA | 4070475 = | 67 (2.170) | intergenic (‑74/+40) | yihR/yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase | |||||
| * | ? | NC_000913_3_pae_tpiA | 225154 = | NA (NA) | 6 (0.190) | 6/274 | 3.3 | NA | noncoding (1384/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_tpiA | 225176 = | NA (NA) | noncoding (1406/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4179572 | 44 (1.380) | 5 (0.160) | 5/272 | 3.6 | 12.2% | intergenic (+73/‑340) | rplA/rplJ | 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10 |
| ? | NC_000913_3_pae_tpiA | = 4179682 | 30 (0.980) | intergenic (+183/‑230) | rplA/rplJ | 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10 | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3365284 | 46 (1.440) | 5 (0.160) | 5/272 | 3.6 | 10.4% | pseudogene (100/367 nt) | yhcE | pseudogene fragment; interrupted by IS5 |
| ? | NC_000913_3_pae_tpiA | = 3365294 | 42 (1.370) | pseudogene (110/367 nt) | yhcE | pseudogene fragment; interrupted by IS5 | |||||
| * | ? | NC_000913_3_pae_tpiA | 644022 = | 33 (1.030) | 6 (0.200) | 5/268 | 3.6 | 17.6% | intergenic (‑55/+175) | rnk/rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| ? | NC_000913_3_pae_tpiA | 644051 = | 25 (0.830) | intergenic (‑84/+146) | rnk/rna | regulator of nucleoside diphosphate kinase/ribonuclease I | |||||
| * | ? | NC_000913_3_pae_tpiA | 4245014 = | NA (NA) | 4 (0.130) | 4/264 | 3.9 | NA | noncoding (7/126 nt) | REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913_3_pae_tpiA | 4245040 = | NA (NA) | noncoding (33/126 nt) | REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4040816 | NA (NA) | 4 (0.130) | 4/264 | 3.9 | 5.1% | intergenic (+180/+90) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_pae_tpiA | = 4040840 | 80 (2.500) | intergenic (+204/+66) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_pae_tpiA | 1911650 = | 51 (1.590) | 5 (0.170) | 4/260 | 3.9 | 9.7% | intergenic (+1/+45) | yebQ/htpX | putative transporter/putative endopeptidase |
| ? | NC_000913_3_pae_tpiA | 1911680 = | 46 (1.570) | intergenic (+31/+15) | yebQ/htpX | putative transporter/putative endopeptidase | |||||
| * | ? | NC_000913_3_pae_tpiA | 854780 = | 29 (0.910) | 4 (0.130) | 4/264 | 3.9 | 12.9% | intergenic (+15/+44) | ybiR/ldtB | putative transporter/L,D‑transpeptidase linking Lpp to murein |
| ? | NC_000913_3_pae_tpiA | 854807 = | 27 (0.910) | intergenic (+42/+17) | ybiR/ldtB | putative transporter/L,D‑transpeptidase linking Lpp to murein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 176976 | NA (NA) | 4 (0.140) | 4/260 | 3.9 | NA | noncoding (8/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 176979 | NA (NA) | noncoding (11/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||