mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 21.4% | 67.1 / 12.9 | 43 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 32 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 394471 | 34 (1.030) | 5 (0.170) | 5/260 | 3.6 | 14.7% | intergenic (+53/‑35) | yaiT/yaiV | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator |
| ? | NC_000913_3_pae_tpiA | = 394475 | 27 (0.900) | intergenic (+57/‑31) | yaiT/yaiV | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator | |||||
| * | ? | NC_000913_3_pae_tpiA | = 2860427 | 26 (0.790) | 5 (0.160) | 5/266 | 3.7 | 16.9% | intergenic (+11/+40) | pphB/ygbI | serine/threonine‑specific protein phosphatase 2/DeoR family putative transcriptional regulator |
| ? | NC_000913_3_pae_tpiA | = 2860433 | 25 (0.820) | intergenic (+17/+34) | pphB/ygbI | serine/threonine‑specific protein phosphatase 2/DeoR family putative transcriptional regulator | |||||
| * | ? | NC_000913_3_pae_tpiA | 2724404 = | 22 (0.670) | 5 (0.160) | 5/270 | 3.8 | 17.9% | coding (277/324 nt) | yfiM | putative lipoprotein |
| ? | NC_000913_3_pae_tpiA | 2724422 = | 25 (0.800) | coding (295/324 nt) | yfiM | putative lipoprotein | |||||
| * | ? | NC_000913_3_pae_tpiA | 494022 = | 28 (0.850) | 5 (0.150) | 5/282 | 3.9 | 15.0% | coding (1931/1932 nt) | dnaX | DNA polymerase III/DNA elongation factor III, tau and gamma subunits |
| ? | NC_000913_3_pae_tpiA | 494045 = | 29 (0.890) | intergenic (+22/‑31) | dnaX/ybaB | DNA polymerase III/DNA elongation factor III, tau and gamma subunits/DNA‑binding protein, putative nucleoid‑associated protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 303629 | 28 (0.850) | 4 (0.130) | 4/260 | 4.1 | 12.8% | intergenic (+24/+224) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein |
| ? | NC_000913_3_pae_tpiA | = 303636 | 29 (0.970) | intergenic (+31/+217) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4042456 | 39 (1.180) | 5 (0.160) | 4/268 | 4.2 | 14.0% | coding (42/987 nt) | srkA | Cpx stress response Thr/Ser protein kinase; MazF antagonist protein |
| ? | NC_000913_3_pae_tpiA | = 4042486 | 25 (0.810) | coding (72/987 nt) | srkA | Cpx stress response Thr/Ser protein kinase; MazF antagonist protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 911155 | NA (NA) | 4 (0.130) | 4/268 | 4.2 | NA | noncoding (9/26 nt) | REP84 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP84 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 911163 | NA (NA) | noncoding (17/26 nt) | REP84 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP84 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | 224059 = | NA (NA) | 4 (0.130) | 4/272 | 4.2 | NA | noncoding (289/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_tpiA | 224082 = | NA (NA) | noncoding (312/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_pae_tpiA | 4125304 = | 46 (1.400) | 4 (0.130) | 4/276 | 4.3 | 8.1% | coding (1423/2199 nt) | priA | Primosome factor n' (replication factor Y) |
| ? | NC_000913_3_pae_tpiA | 4125360 = | 47 (1.480) | coding (1367/2199 nt) | priA | Primosome factor n' (replication factor Y) | |||||
| * | ? | NC_000913_3_pae_tpiA | = 315852 | NA (NA) | 4 (0.130) | 4/278 | 4.3 | NA | coding (266/867 nt) | insF1 | IS3 transposase B |
| ? | NC_000913_3_pae_tpiA | = 315875 | NA (NA) | coding (289/867 nt) | insF1 | IS3 transposase B | |||||