mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_vch_tpiA | 1,544,021 | 1 | . | A | 69.0% | 89.4 / 39.7 | 42 | coding (40/1389 nt) | narU | nitrate/nitrite transporter |
| * | NC_000913_3_vch_tpiA | 4,296,090 | 0 | C | T | 22.1% | 114.4 / 29.1 | 68 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 207 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | = 3944978 | NA (NA) | 8 (0.180) | 7/274 | 5.1 | 23.0% | noncoding (3944978/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 4038811 | 28 (0.590) | noncoding (4038811/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 2727891 = | NA (NA) | 8 (0.180) | 7/274 | 5.1 | NA | noncoding (2727891/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 2727910 = | NA (NA) | noncoding (2727910/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | = 227052 | 26 (0.550) | 8 (0.180) | 7/274 | 5.1 | 24.3% | noncoding (227052/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 2727910 = | NA (NA) | noncoding (2727910/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | = 3508072 | 58 (1.220) | 7 (0.150) | 7/276 | 5.2 | 11.1% | noncoding (3508072/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 3508093 | 56 (1.220) | noncoding (3508093/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 2035286 = | 26 (0.550) | 7 (0.160) | 6/262 | 5.3 | 20.3% | noncoding (2035286/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 2035318 = | 31 (0.710) | noncoding (2035318/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | = 4542720 | 31 (0.650) | 6 (0.140) | 6/268 | 5.4 | 15.6% | noncoding (4542720/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 4543016 | 36 (0.810) | noncoding (4543016/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 2304471 = | 53 (1.120) | 6 (0.130) | 6/272 | 5.5 | 12.1% | noncoding (55/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_vch_tpiA | = 2347207 | 37 (0.820) | noncoding (48/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | |||||
| * | ? | NC_000913_3_vch_tpiA | 411180 = | 42 (0.890) | 6 (0.130) | 6/272 | 5.5 | 13.3% | noncoding (103/191 nt) | REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913_3_vch_tpiA | 411213 = | 38 (0.840) | noncoding (136/191 nt) | REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913_3_vch_tpiA | = 2347214 | 44 (0.930) | 5 (0.110) | 5/272 | 6.0 | 8.9% | noncoding (55/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences |
| ? | NC_000913_3_vch_tpiA | 4027525 = | 61 (1.350) | noncoding (204/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913_3_vch_tpiA | = 2347214 | 44 (0.930) | 5 (0.110) | 5/272 | 6.0 | 9.0% | noncoding (55/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences |
| ? | NC_000913_3_vch_tpiA | 3042447 = | 59 (1.310) | noncoding (127/155 nt) | REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||