mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 78 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,726,651 | 0 | T | G | 71.9% | ‑3.4 / 24.0 | 32 | noncoding (2534/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 4,523,474 | 0 | G | T | 70.9% | 170.3 / 113.4 | 118 | R207R (CGC→CGA) | yjhG | KpLE2 phage‑like element; D‑xylonate dehydratase |
| * | NC_000913 | 2,727,033 | 0 | C | A | 66.7% | ‑6.7 / 12.4 | 18 | noncoding (2152/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 2,726,555 | 0 | C | A | 56.2% | ‑2.7 / 43.8 | 32 | noncoding (2630/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 2,726,560 | 0 | C | T | 56.2% | ‑2.7 / 39.5 | 32 | noncoding (2625/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 2,727,031 | 0 | T | C | 53.3% | ‑6.0 / 15.8 | 18 | noncoding (2154/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 2,727,046 | 0 | A | T | 53.3% | ‑6.4 / 11.4 | 19 | noncoding (2139/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 2,726,970 | 0 | G | C | 50.0% | ‑6.7 / 16.9 | 14 | noncoding (2215/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 2,726,976 | 0 | C | G | 50.0% | ‑6.7 / 21.1 | 14 | noncoding (2209/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 2,727,001 | 0 | T | C | 50.0% | ‑6.2 / 11.3 | 14 | noncoding (2184/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 2,727,078 | 0 | C | G | 46.2% | ‑5.7 / 17.3 | 13 | noncoding (2107/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 1,529,203 | 0 | C | A | 45.5% | 10.0 / 27.4 | 22 | intergenic (+2051/‑719) | yncH/ydcD | DUF5445 domain‑containing protein YncH/uncharacterized protein YdcD |
| * | NC_000913 | 2,726,996 | 0 | A | . | 42.9% | ‑6.6 / 20.8 | 14 | noncoding (2189/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 2,727,003 | 1 | . | C | 42.9% | ‑6.7 / 27.2 | 14 | noncoding (2182/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 2,727,044 | 0 | C | A | 42.1% | ‑6.4 / 18.9 | 19 | noncoding (2141/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 2,727,048 | 0 | A | G | 42.1% | ‑6.3 / 19.6 | 19 | noncoding (2137/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 2,727,049 | 0 | C | T | 42.1% | ‑6.3 / 18.0 | 19 | noncoding (2136/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 4,412,781 | 0 | C | G | 41.5% | 63.9 / 15.8 | 41 | S132C (TCT→TGT) | yjfM | DUF1190 domain‑containing protein YjfM |
| * | NC_000913 | 2,726,652 | 0 | A | G | 40.6% | ‑6.3 / 35.5 | 32 | noncoding (2533/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 361,311 | 0 | C | A | 39.0% | 116.9 / 16.2 | 107 | E184* (GAA→TAA) | lacA | galactoside O‑acetyltransferase |
| Marginal new junction evidence (lowest skew 10 of 75 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 374963 | 119 (1.110) | 19 (0.260) | 10/194 | 1.9 | 14.8% | intergenic (+82/‑496) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | = 377487 | 136 (1.830) | intergenic (+176/+48) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 1907489 | 312 (2.910) | 27 (0.250) | 13/280 | 2.2 | 8.0% | coding (103/144 nt) | yobF | DUF2527 domain‑containing protein YobF |
| ? | NC_000913 | = 1979270 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | 374922 = | 116 (1.080) | 26 (0.260) | 11/264 | 2.4 | 13.4% | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377329 = | 228 (2.250) | intergenic (+18/+206) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 138770 = | 110 (1.020) | 22 (0.260) | 8/224 | 2.6 | 19.0% | intergenic (+137/+65) | cueO/gcd | multicopper oxidase CueO/quinoprotein glucose dehydrogenase |
| ? | NC_000913 | 1954456 = | 100 (1.170) | intergenic (+43/+122) | cmoB/torZ | tRNA U34 carboxymethyltransferase/trimethylamine N‑oxide reductase 2 | |||||
| * | ? | NC_000913 | = 1907629 | 196 (1.830) | 26 (0.240) | 10/280 | 2.8 | 11.7% | intergenic (‑38/+632) | yobF/yebO | DUF2527 domain‑containing protein YobF/uncharacterized protein YebO |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1287084 | 180 (1.680) | 24 (0.260) | 8/240 | 2.8 | 13.0% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | NC_000913 | 1287557 = | 166 (1.810) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | NC_000913 | 1286708 = | 186 (1.730) | 14 (0.150) | 7/238 | 3.0 | 5.4% | intergenic (+182/‑1) | narI/ychS | nitrate reductase A subunit gamma/putative uncharacterized protein YchS |
| ? | NC_000913 | = 1287241 | 336 (3.690) | intergenic (‑5/+3) | rttR/tyrV | small RNA RttR/tRNA‑Tyr | |||||
| * | ? | NC_000913 | 1907626 = | 200 (1.860) | 12 (0.110) | 8/280 | 3.2 | 5.7% | intergenic (‑35/+635) | yobF/yebO | DUF2527 domain‑containing protein YobF/uncharacterized protein YebO |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 374922 = | 116 (1.080) | 18 (0.230) | 5/206 | 3.2 | 22.3% | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377430 = | 40 (0.510) | intergenic (+119/+105) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 781147 = | 81 (0.750) | 11 (0.110) +AATGGTA |
7/266 | 3.3 | 12.5% | noncoding (1/76 nt) | lysY | tRNA‑Lys |
| ? | NC_000913 | 2729374 = | NA (NA) | noncoding (71/76 nt) | gltW | tRNA‑Glu | |||||