Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F29 I1 R1
|
57 |
65.8 |
2790598 |
98.6% |
2751529 |
146.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
5,677,566 |
+G |
intergenic (+113/+27) |
rhlE‑II → / ← yceI |
ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 5,677,565 | 1 | . | G | 96.4%
| 190.2
/ 0.1
| 55 | intergenic (+112/+28) | rhlE‑II/yceI | ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base G (26/27); total (26/29) |
| Fisher's exact test for biased strand distribution p-value = 4.92e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.95e-01 |
AGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GC‑GCGCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGC > NC_002947_CJ‑RC/5677422‑5677705
|
aGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTAATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑gc‑ggcc < 8:160082/148‑4 (MQ=255)
cgcCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑gc‑ggccccc < 4:296842/149‑7 (MQ=255)
gcCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑gc‑ggccccct > 8:263442/1‑142 (MQ=255)
ccAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCg < 3:257186/149‑1 (MQ=255)
aTAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACACGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGCAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACtt < 6:232666/147‑1 (MQ=37)
aTAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTTCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCGTCGGTTTTCAGCTGGCAGAAATTACtt < 8:298925/147‑1 (MQ=37)
aTAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACtt < 2:309925/147‑1 (MQ=255)
aTAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCt > 8:100936/1‑149 (MQ=255)
aTAGAAGAACCGAGGGGGCGGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTc < 7:297885/148‑1 (MQ=37)
gAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGc < 2:56332/148‑1 (MQ=255)
tACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCGCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTcac > 7:287970/1‑149 (MQ=255)
ggggCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGATAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTGGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTc < 4:25498/148‑1 (MQ=38)
ggCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGa > 8:126373/1‑148 (MQ=255)
gctgctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACACGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTCCTTCACACCTTCGac > 4:301690/1‑148 (MQ=37)
tgctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGCCACt > 2:169196/1‑149 (MQ=255)
tgctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACt > 2:235546/1‑149 (MQ=255)
gCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtc < 7:296188/149‑1 (MQ=255)
gCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCGCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACCCCTTCGACACTGATAtc > 4:23988/1‑149 (MQ=38)
aGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtcca < 6:138542/149‑1 (MQ=255)
gCCCTATCACGACACAAGGCCGCTCCTCCAGATAATTTCTTCATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccag < 4:75787/149‑1 (MQ=38)
cccTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccag < 3:69333/148‑1 (MQ=255)
cTATCACTACACAAGGCCGCTCCTGCTTATAATTTCTTGATCTCTACAGTAGCGGCCTTGTGTCGTTATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGTCACTGATAtccaggtc < 5:207545/149‑1 (MQ=255)
tATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtc > 7:345327/1‑148 (MQ=255)
tCACTACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtcca < 5:112199/148‑1 (MQ=255)
tCACGACACAAGGCCGCTCCTGCTGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTGGTGATAGGGCCGCAA‑AGGG‑GCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtccag < 3:52134/149‑1 (MQ=38)
aCGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtccagg < 2:225810/148‑1 (MQ=255)
aCGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAggg < 7:280682/149‑1 (MQ=255)
aaGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCg > 5:262996/1‑148 (MQ=255)
aGGCCGCTCCTGCATAAAATTTTTTTATCTCTCCTGGAGGGGCTTTGTGTGGTTATAGGGCCGCAATG‑GG‑GCCCCGTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGaa < 1:170826/149‑1 (MQ=255)
cGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTg < 4:129053/141‑1 (MQ=255)
cGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTg > 3:129053/1‑141 (MQ=255)
tCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCAc > 1:188003/1‑149 (MQ=255)
tGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCg > 7:161998/1‑149 (MQ=255)
cAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCggg > 3:62636/1‑149 (MQ=255)
cAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCgg < 4:55065/148‑1 (MQ=255)
agagAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGc > 5:230340/1‑149 (MQ=255)
agagAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGc > 8:19771/1‑149 (MQ=255)
agaATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCt > 7:190339/1‑149 (MQ=255)
tCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGAt < 5:191851/148‑1 (MQ=255)
tGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGcc > 7:119690/1‑148 (MQ=255)
tACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGaa < 1:18787/144‑1 (MQ=255)
gAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcagg < 7:263442/149‑1 (MQ=255)
gAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACAGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcagg > 6:102128/1‑149 (MQ=255)
ggCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcaggttca < 1:169196/149‑1 (MQ=255)
gCCTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcaggttcag > 4:273823/1‑149 (MQ=255)
ccTTGTGTCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGc > 6:267103/1‑149 (MQ=255)
gtgtCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgt < 2:188003/147‑1 (MQ=255)
tgtCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGGCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtgg < 3:301690/148‑1 (MQ=255)
tCGTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtgg > 7:270317/1‑149 (MQ=255)
gTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtggt < 7:19771/148‑1 (MQ=255)
gTGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtggt < 6:230340/148‑1 (MQ=255)
tGATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGtggtggtgg > 8:133652/1‑149 (MQ=255)
gATAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGc > 1:195997/1‑149 (MQ=255)
aTAGGGCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGc < 7:126373/148‑1 (MQ=255)
ggCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCGTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTg > 2:79753/1‑148 (MQ=255)
gCCGCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGaa < 8:190339/149‑1 (MQ=255)
gCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGc > 2:82731/1‑148 (MQ=255)
gCAA‑A‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGc > 2:293682/1‑148 (MQ=255)
|
AGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑A‑GC‑GCGCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGC > NC_002947_CJ‑RC/5677422‑5677705
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GC‑G‑CGCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCG > NC_002947_CJ‑RC/5677426‑5677698
|
CCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGG < NB501016:282:H2V7GAFX2:2:21208:23164:8013/151‑1 (MQ=60)
GGGCTTATCGAAGTACCGTGGGGGCTGGTTCGCAGCCCTATCACGACACATGGCCGCTCGTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTAC < NB501016:282:H2V7GAFX2:4:21411:20434:4165/151‑1 (MQ=60)
TATAGAAGAACCGAGGGGGCGGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCT < NB501016:282:H2V7GAFX2:4:21512:18002:8054/150‑1 (MQ=60)
ATAGAATTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTTATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTG < NB501016:282:H2V7GAFX2:3:21509:16922:17817/150‑1 (MQ=60)
GTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑GCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACC > NB501016:282:H2V7GAFX2:4:21510:22397:9038/1‑151 (MQ=60)
GGGGGCTGATCCGAACCCCTATCACCAAACAAGCCCGATCCTGCACATAATTTCTTGATCTCTACAGTAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCG < NB501016:282:H2V7GAFX2:3:11407:15931:17859/150‑1 (MQ=60)
CTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑GCGGTTTTGGGGTGGGGGAAATTACTTCTGGTTCACCCCGTCGACACTG > NB501016:282:H2V7GAFX2:2:11109:6370:13358/1‑151 (MQ=60)
CTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAAGTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GC‑GACCCCC‑‑GCGGTTTTCAGCTGGCAGAAAATACTTATGCTTAACACCTGCGACACTGCT > NB501016:282:H2V7GAFX2:3:21401:14133:11436/1‑150 (MQ=60)
TTCGCAGCCCTATCACGACACAAGGCCGCTCCGGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGCTAGGGCCGCAAA‑GCGG‑CCCCC‑‑GCGGTTTTGAGCTGGCCGAAATTTCGTCTGCTTCACACCTTCGACACTG > NB501016:282:H2V7GAFX2:4:21405:13901:12137/1‑147 (MQ=60)
CGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCC < NB501016:282:H2V7GAFX2:4:21512:4514:1570/151‑1 (MQ=60)
GCCCTTTCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGG < NB501016:282:H2V7GAFX2:2:11203:7963:10512/150‑1 (MQ=60)
CCTATCACTACACAAGGCCGCTCCTGCTTATAATTTCTTGATCTCTACAGTAGCGGCCTTGTGTCGTTATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGTCACTGATATCCAGGTCC < NB501016:282:H2V7GAFX2:3:21407:21465:5534/151‑1 (MQ=60)
CTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCC > NB501016:282:H2V7GAFX2:4:21610:11634:6272/1‑150 (MQ=60)
ATCACTACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAG < NB501016:282:H2V7GAFX2:3:11512:15487:1169/150‑1 (MQ=60)
ATCACGACACAAGGCCGCTCCTGCTGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTGGTGATAGGGCCGCAAAGGG‑G‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGG < NB501016:282:H2V7GAFX2:2:11111:15275:19202/151‑1 (MQ=60)
CACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTAgaaaggaagagcacacgacggaactccagtcaccgctcattt > NB501016:282:H2V7GAFX2:2:11109:3738:6820/1‑109 (MQ=60)
CACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGT < NB501016:282:H2V7GAFX2:4:21508:6083:19547/151‑1 (MQ=60)
CAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGA > NB501016:282:H2V7GAFX2:3:21507:22798:2358/1‑150 (MQ=60)
AAGGCCGCTCCTGCATAAAATTTTTTTATCTCTCCTGGAGGGGCTTTGTGTGGTTATAGGGCCGCAAT‑G‑‑G‑GGCCCCGTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAG < NB501016:282:H2V7GAFX2:1:11311:9437:5295/151‑1 (MQ=60)
CCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGC > NB501016:282:H2V7GAFX2:2:11303:22920:15349/1‑143 (MQ=60)
CTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACC > NB501016:282:H2V7GAFX2:1:21102:7489:13755/1‑151 (MQ=60)
CTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGG > NB501016:282:H2V7GAFX2:4:11609:11933:8073/1‑151 (MQ=60)
GCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGC > NB501016:282:H2V7GAFX2:2:11202:7597:2930/1‑151 (MQ=60)
CAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCC > NB501016:282:H2V7GAFX2:3:21412:19804:3463/1‑151 (MQ=60)
GAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTT > NB501016:282:H2V7GAFX2:4:21403:10453:5856/1‑151 (MQ=60)
TTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATG < NB501016:282:H2V7GAFX2:3:21403:8362:16580/150‑1 (MQ=60)
CTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCCCAAA‑GCGG‑CCCCC‑‑GCGGGTTTGAGCTGGCAGAAATTAATTATTCTTAACACCTTCGACACTGAAATACAAGTCAAGGGTCTGCGAAGTAGCACCCGGGCCGTTGATGCCC > NB501016:282:H2V7GAFX2:2:21101:23370:4739/1‑151 (MQ=59)
TTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCG > NB501016:282:H2V7GAFX2:4:11512:6459:11365/1‑150 (MQ=60)
CTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAG < NB501016:282:H2V7GAFX2:1:11104:4471:12128/146‑1 (MQ=60)
GGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGT < NB501016:282:H2V7GAFX2:4:21505:19048:11206/151‑1 (MQ=60)
GGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAG < NB501016:282:H2V7GAFX2:1:11310:4717:17642/151‑1 (MQ=60)
GTGTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGGCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGT < NB501016:282:H2V7GAFX2:2:21306:15942:3535/150‑1 (MQ=60)
GTCGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGT > NB501016:282:H2V7GAFX2:4:21506:8865:17874/1‑151 (MQ=60)
CGTGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTG < NB501016:282:H2V7GAFX2:4:11404:20132:17134/150‑1 (MQ=60)
TGATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCG > NB501016:282:H2V7GAFX2:1:21104:14327:4982/1‑151 (MQ=60)
GATAGGGCCGCAAA‑GCGG‑CCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCG < NB501016:282:H2V7GAFX2:4:11601:24445:18352/150‑1 (MQ=60)
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CCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GC‑G‑CGCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCG > NC_002947_CJ‑RC/5677426‑5677698
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
