Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F25 I1 R1
|
61 |
74.4 |
3161000 |
98.6% |
3116746 |
146.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
5,677,566 |
+G |
intergenic (+113/+27) |
rhlE‑II → / ← yceI |
ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 5,677,565 | 1 | . | G | 98.5%
| 238.0
/ ‑3.2
| 68 | intergenic (+112/+28) | rhlE‑II/yceI | ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (41/26); total (42/26) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.67e-01 |
AGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑GCG‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCA > NC_002947_CJ‑RC/5677422‑5677707
|
aGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAgc‑ggcc < 2:56736/148‑4 (MQ=255)
tgACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCt > 4:159555/1‑149 (MQ=255)
tgACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCGCGGTTTTCAGCt > 8:270009/1‑149 (MQ=255)
aCCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCAGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTCTGTCGTCATAGGGCCGCAAAGCGGCC‑CCCTCGGTTATCAGCTgg > 8:135129/1‑149 (MQ=37)
tGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACtt > 8:305684/1‑149 (MQ=255)
tGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACtt > 8:195089/1‑149 (MQ=255)
aTAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGGAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCGCGGGTTTCAGCTGGCAGAAATTACTTCt > 8:147218/1‑149 (MQ=37)
aTAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACtt < 8:187665/147‑1 (MQ=255)
tAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCGCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTg < 8:353400/149‑1 (MQ=255)
ccGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCacac < 7:195089/149‑1 (MQ=255)
ggggCTGCTTCGCAGCCCTATCACTACACAAGGCCGCTCCTGCACAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTc < 3:159555/148‑1 (MQ=38)
gctgctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACCGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGaca < 4:371573/149‑1 (MQ=255)
ctgctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGacac < 8:147413/149‑1 (MQ=255)
tgctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCTGAAATTACTTCTGCTTCACACCTTCGCCACt > 7:330209/1‑149 (MQ=37)
ctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAATGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTg < 3:40090/148‑1 (MQ=255)
ttCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGGTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCATCGACACTGa > 4:269083/1‑148 (MQ=37)
ctgCCCTATCACGACACACGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGGGGCCTTGTGTCGTGATAGGGCGGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtcc < 5:35550/147‑1 (MQ=38)
cAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtcc < 7:393541/149‑1 (MQ=255)
aGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtc > 2:108945/1‑147 (MQ=255)
gCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑GGGCCCCGGGGGTTTCAGCTGGGAGAAATTACTTCTGCTTGACCCCTTCGACCCGGATTtacag > 3:128658/1‑149 (MQ=25)
cccTATCACGACACAAGGCCGCTCCTGTAGAGATCAAGAAATTCTCTGCAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccagg > 6:323569/1‑149 (MQ=14)
cccTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccagg > 6:348245/1‑149 (MQ=255)
cccTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccagg > 5:177136/1‑149 (MQ=255)
cTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCGCGGGTTTGAGCTGGCAGAAATTACTTCTGCTTCACACCGTCGACACTGATTtccaggtc > 1:159140/1‑149 (MQ=37)
aCGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtccagg < 3:307499/148‑1 (MQ=255)
gACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCGCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTc < 4:157331/149‑1 (MQ=255)
acaAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGc < 8:73666/149‑1 (MQ=255)
aaGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCg > 7:11871/1‑148 (MQ=255)
aGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGaa < 1:90849/149‑1 (MQ=255)
gCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAg > 2:128304/1‑148 (MQ=255)
gCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAg > 8:38789/1‑148 (MQ=255)
ccGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTa < 6:367954/149‑1 (MQ=255)
ccGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTa < 8:116977/149‑1 (MQ=255)
cGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAg > 4:118546/1‑149 (MQ=255)
cGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAg < 7:135129/149‑1 (MQ=255)
cGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAg > 6:249297/1‑149 (MQ=255)
gCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGc < 4:99555/149‑1 (MQ=255)
tGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGc < 2:1011/136‑1 (MQ=255)
tGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGc > 1:1011/1‑136 (MQ=255)
tGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCg > 2:340102/1‑149 (MQ=255)
gCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCgg > 8:348215/1‑149 (MQ=255)
gagaATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGcc > 5:347248/1‑149 (MQ=255)
aTTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCttt < 7:305684/148‑1 (MQ=255)
aTTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCttt < 7:348215/148‑1 (MQ=255)
aTTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTg < 7:304953/149‑1 (MQ=255)
ttCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGGTTTAAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATACAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGAt > 1:383477/1‑149 (MQ=38)
tCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGATTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATg > 1:185220/1‑149 (MQ=255)
gATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCg > 3:297175/1‑148 (MQ=255)
tctcTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGaa < 7:270009/148‑1 (MQ=255)
tctACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTc > 6:196519/1‑149 (MQ=255)
tctACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTc > 6:22889/1‑149 (MQ=255)
tACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgt > 7:214102/1‑149 (MQ=255)
tACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACAGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgt > 2:361468/1‑149 (MQ=255)
cAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgtt > 8:50585/1‑148 (MQ=255)
aGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCCGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCACGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttca > 2:237413/1‑149 (MQ=39)
gAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcagg > 8:75604/1‑149 (MQ=255)
ttGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgt > 7:56383/1‑149 (MQ=255)
ttGTGTCGTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGAGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgt > 8:255022/1‑149 (MQ=255)
gTGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtggtg < 5:323569/149‑1 (MQ=255)
tGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGtggtggtgg > 1:368142/1‑149 (MQ=255)
tGATAGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCATCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGtggtggtgg > 1:195062/1‑149 (MQ=255)
aTAGGGCCGCAAAGCGGCC‑CCCTCGGGTTTCAGCTGGGAGAAATTACTTCTGCTTCACACCTTCGACACTGATATGCAGGGCCGGGGTCTGCGAAGTAGCACCGGGGCGGGTGGTGCCGGGGTCGTGCGGGTGCGGGGGGGTGGGGGCg > 4:322792/1‑149 (MQ=255)
aGGGCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGtt > 3:216199/1‑149 (MQ=255)
gCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTg > 5:337084/1‑147 (MQ=255)
gCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGaa < 4:359729/149‑1 (MQ=255)
gCCGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGaa < 6:337084/149‑1 (MQ=255)
cGCAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGc > 1:56332/1‑149 (MQ=255)
cAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCa < 6:177136/149‑1 (MQ=255)
cAAAGCGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTACACACCTTCGACACTCATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGCGCCTTTGATCCCGAAGTCGTACAGCTTCAGCGTGGTGGTGGCGTTGAAGcc > 3:70380/1‑148 (MQ=255)
|
AGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑GCG‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCA > NC_002947_CJ‑RC/5677422‑5677707
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGGTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑GCGCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCGCGCTCG > NC_002947_CJ‑RC/5677417‑5677716
|
CGGTGCGCCCCCAGCGCTGCTCACCCGCAAGGCCTGATAGACGAACCGAGGGGGCTGCTTCCCAGCCCTACCACGACACAAGCCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑GG < NB501016:282:H2V7GAFX2:4:21601:12967:6263/151‑1 (MQ=60)
GGTGAGCGCCCCGCGCGGCTGACCCCCACGGGCTTATAGACGTCCCGCGGGGGCGGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑Ggc < NB501016:282:H2V7GAFX2:2:21212:2937:18447/151‑3 (MQ=60)
GCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGCGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑Ggcccccgcg > NB501016:282:H2V7GAFX2:2:11108:24889:12179/1‑142 (MQ=60)
ACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACC < NB501016:282:H2V7GAFX2:4:11611:14463:10711/151‑1 (MQ=60)
CCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCGTGTGGCGTGGTAGGGCCGCACAGCGGCCCCCTC‑‑GGTGTTCAGCTGGgtgaaattagtggtgagtgtcacct > NB501016:282:H2V7GAFX2:1:21102:11959:7072/1‑126 (MQ=60)
GGGGGCTGATTCGCAGCCCTATCACTACACAAGGCCGCTCCTGCACAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCG < NB501016:282:H2V7GAFX2:2:11306:13012:5434/150‑1 (MQ=60)
CTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCTGAAATTACTTCTGCTTCACACCTTCGCCACTG > NB501016:282:H2V7GAFX2:4:21510:16124:15536/1‑151 (MQ=60)
GCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAATGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGA < NB501016:282:H2V7GAFX2:2:11108:1758:11174/150‑1 (MQ=60)
GCTGCCCTATCACGACACACGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGGGGCCTTGTGTCGTGATAGGGCGGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCA < NB501016:282:H2V7GAFX2:3:11407:10733:10636/151‑1 (MQ=60)
GCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCA < NB501016:282:H2V7GAFX2:4:21610:6309:4953/151‑1 (MQ=60)
AGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑GGGCCC‑CGGGGGTTTCAGCTGGGAGAAATTACTTCTGCTTGACCCCTTCGACccggatttacagg > NB501016:282:H2V7GAFX2:2:11212:6905:15872/1‑138 (MQ=60)
GCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGT > NB501016:282:H2V7GAFX2:3:11608:6071:10225/1‑151 (MQ=60)
CCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCGC‑‑GGGTTTGAGCTGGCAGAAATTACTTCTGCTTCACACCGTCGACACTGATTTCCAGGTCC > NB501016:282:H2V7GAFX2:1:11305:14753:1083/1‑151 (MQ=60)
CACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGG < NB501016:282:H2V7GAFX2:2:21211:22542:11094/150‑1 (MQ=60)
CAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGA > NB501016:282:H2V7GAFX2:4:11403:21698:1736/1‑150 (MQ=60)
AAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAG < NB501016:282:H2V7GAFX2:1:11204:24207:12407/151‑1 (MQ=60)
CCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGC < NB501016:282:H2V7GAFX2:4:11512:13274:10164/151‑1 (MQ=60)
CTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCG > NB501016:282:H2V7GAFX2:1:11101:10642:4510/1‑138 (MQ=60)
AGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCT > NB501016:282:H2V7GAFX2:3:21603:22971:14833/1‑151 (MQ=60)
AATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGA < NB501016:282:H2V7GAFX2:4:21506:14584:6749/151‑1 (MQ=60)
AATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTG < NB501016:282:H2V7GAFX2:4:21601:16623:18488/150‑1 (MQ=60)
AATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTG < NB501016:282:H2V7GAFX2:4:21506:4980:9181/150‑1 (MQ=60)
TTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGGTTTAAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATACAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATG > NB501016:282:H2V7GAFX2:1:21311:24890:5181/1‑151 (MQ=60)
TTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GATTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGC > NB501016:282:H2V7GAFX2:1:11309:12196:19973/1‑151 (MQ=60)
TGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGA > NB501016:282:H2V7GAFX2:2:21209:15569:12493/1‑150 (MQ=60)
ATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAG < NB501016:282:H2V7GAFX2:4:21412:23622:4437/150‑1 (MQ=60)
CTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTT > NB501016:282:H2V7GAFX2:4:21402:17583:18018/1‑151 (MQ=60)
CTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTG > NB501016:282:H2V7GAFX2:4:11410:25865:11468/1‑151 (MQ=60)
CGTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGG < NB501016:282:H2V7GAFX2:3:21511:12521:13245/151‑1 (MQ=60)
GTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGC > NB501016:282:H2V7GAFX2:1:21308:12705:6399/1‑151 (MQ=60)
GTGATAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCATCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGC > NB501016:282:H2V7GAFX2:1:11311:24852:16644/1‑151 (MQ=60)
TAGGGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTT > NB501016:282:H2V7GAFX2:2:21104:2434:7282/1‑151 (MQ=60)
GGCCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGA > NB501016:282:H2V7GAFX2:3:21602:12310:1296/1‑149 (MQ=60)
CCGCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCC > NB501016:282:H2V7GAFX2:1:11110:17041:10828/1‑151 (MQ=60)
GCAAAGCGGCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTACACACCTTCGACACTCATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGCGCCTTTGATCCCGAAGTCGTACAGCTTCAGCGTGGTGGTGGCGTTGAAGCCA > NB501016:282:H2V7GAFX2:2:11202:1342:5194/1‑150 (MQ=60)
GCCCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCGCGCTCG < NB501016:282:H2V7GAFX2:1:11211:14197:7069/151‑1 (MQ=60)
|
CGGTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑GCGCCCTC‑‑GGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCGCGCTCG > NC_002947_CJ‑RC/5677417‑5677716
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
