Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F61 I1 R1
|
63 |
66.6 |
2847048 |
98.6% |
2807189 |
146.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
5,677,566 |
+G |
intergenic (+113/+27) |
rhlE‑II → / ← yceI |
ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 5,677,565 | 1 | . | G | 100.0%
| 259.9
/ NA
| 72 | intergenic (+112/+28) | rhlE‑II/yceI | ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (45/27); total (45/27) |
GAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑GCGCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCC > NC_002947_CJ‑RC/5677421‑5677706
|
gAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGCGGGGGCTGCTTCGCAGCCCTATCCCGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAgc‑ggcc < 4:18451/149‑4 (MQ=255)
aGCGCCCAGCGCTGCGGACCCGCAAGGGCGGAAAGAAGAACCGCGGGGGCTGCTTCGCAGCCCTACCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAgc‑ggcc < 3:265503/148‑4 (MQ=38)
gACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTg > 6:103798/1‑149 (MQ=255)
aCCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCGCCTGCAGAGAATTTCTTGATGTGTGCAGGAGCGGCCTTGTGTCGTGATGGGGCCGCAAAGCGGCCCCCTCGG‑GTTTCGGCTgg > 4:235219/1‑149 (MQ=37)
ccGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTgg > 2:46109/1‑147 (MQ=255)
gCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACGGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAg > 2:22982/1‑148 (MQ=255)
aGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAAt > 2:253492/1‑149 (MQ=255)
gCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTATAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTAc > 2:256312/1‑149 (MQ=255)
gCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTAc < 1:242828/149‑1 (MQ=255)
cTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAATCGGCCCCCACGG‑ATTTAAGCTGGCAGAAATTACt > 4:305190/1‑149 (MQ=37)
aTAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTc > 7:250686/1‑148 (MQ=255)
gAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCt < 6:157956/149‑1 (MQ=255)
aaGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCCCTCCAGCAGAGAATTTCTTGATATCTAAAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCACGG‑GTTTCAGCTGGCAGAAATTAAATCTGCt > 4:61283/1‑148 (MQ=37)
ccGAGGGGGCTGCTTCGCAGCCCTATCACGACTCAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTcac < 8:180952/147‑1 (MQ=255)
ccGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTcaca < 4:274557/148‑1 (MQ=255)
ccGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCacac < 5:295493/149‑1 (MQ=255)
cGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACAcc > 5:309604/1‑149 (MQ=255)
aGGGGGCGGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTTATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCtt < 6:58367/149‑1 (MQ=37)
ggCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGCTAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGa > 1:48118/1‑148 (MQ=255)
tgctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTTATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACt < 3:142193/149‑1 (MQ=255)
tgctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCATCGaaa > 2:315438/1‑145 (MQ=255)
ttCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTg > 7:105419/1‑147 (MQ=255)
ttCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGa > 7:214346/1‑148 (MQ=255)
ttCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCGCGG‑TTTTGAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACGGa > 3:120324/1‑148 (MQ=37)
cccTTTCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGGCGTGATAGGGCCGCAAAGCGGCCCCCTCGGCTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccag < 1:132365/149‑1 (MQ=38)
ccTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggt < 2:25475/149‑1 (MQ=255)
cTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtc > 6:140879/1‑149 (MQ=255)
cTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtc > 2:117472/1‑149 (MQ=255)
cccGACACAAGGCCGCTCCGGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtccagg < 6:232071/147‑1 (MQ=255)
aCGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCg > 3:108729/1‑87 (MQ=25)
aCGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCg < 4:108729/87‑1 (MQ=25)
aCGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtccagg < 2:60266/148‑1 (MQ=255)
aCGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtccagg < 6:89778/148‑1 (MQ=255)
aCGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAggg > 5:167996/1‑149 (MQ=255)
acaAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGc > 6:108705/1‑149 (MQ=255)
aaGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTGAGCTGGCAGATATTACTTCTGCTTCACACCTTCGACACTGATATACAGGTGCAGGGTCTGCg > 3:181071/1‑148 (MQ=38)
aaGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACAGTGATATCCAGGTCCGGGGTCTGCg > 2:351250/1‑148 (MQ=39)
gCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCg < 8:247967/68‑1 (MQ=18)
agagAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCggg > 7:307810/1‑148 (MQ=255)
gagaATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGc > 7:212584/1‑148 (MQ=255)
gaATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCtt < 5:102839/149‑1 (MQ=255)
tttCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCt < 1:351076/125‑1 (MQ=255)
tttCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCt > 2:351076/1‑125 (MQ=255)
tttCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGa < 1:203462/149‑1 (MQ=255)
tCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATg > 3:141485/1‑149 (MQ=255)
ttGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGcc > 6:36780/1‑149 (MQ=255)
ttGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGc > 7:145937/1‑148 (MQ=255)
ttGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCACGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGcc > 4:301367/1‑149 (MQ=255)
gATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGc < 3:225130/146‑1 (MQ=255)
gATCTATACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTAGG‑TTTTCAGCTGGCAGAAATTACTTCTTCTTCACACCTTAGACACTTATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCg > 1:21230/1‑148 (MQ=38)
aCAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAg < 7:33222/144‑1 (MQ=255)
aCAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgtt < 3:224137/149‑1 (MQ=255)
aGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttca < 3:40345/149‑1 (MQ=255)
gAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcagg > 6:238498/1‑149 (MQ=255)
ggCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcaggttca < 2:71638/149‑1 (MQ=255)
ccTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTAACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGc > 1:153581/1‑149 (MQ=255)
ttGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgt > 6:277670/1‑149 (MQ=255)
gtgtCGTGATAGGGCCACAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtg > 7:49189/1‑148 (MQ=255)
tgtCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgt < 8:145937/146‑1 (MQ=255)
gtCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtg > 6:103539/1‑149 (MQ=255)
tCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtgg > 6:137413/1‑149 (MQ=255)
tCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtg < 1:253492/148‑1 (MQ=255)
tCGTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCATCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTACAGGTTCAGCgtgctg > 8:183162/1‑148 (MQ=255)
gTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtggtg < 5:161388/149‑1 (MQ=255)
gTGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtggtg < 1:22982/149‑1 (MQ=255)
tGATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGtggtggtgg > 6:152683/1‑149 (MQ=255)
gATAGGGCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGc > 1:67131/1‑149 (MQ=255)
gggCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGtt < 4:212119/148‑1 (MQ=255)
gggCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGtt > 2:291210/1‑148 (MQ=255)
ggCCGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTg > 6:277498/1‑148 (MQ=255)
cGCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGc > 4:50675/1‑149 (MQ=255)
gCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAg > 7:71249/1‑147 (MQ=255)
gCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGcc > 3:30680/1‑149 (MQ=255)
gCAAAGCGGCCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGc > 1:341851/1‑148 (MQ=255)
|
GAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑GCGCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCC > NC_002947_CJ‑RC/5677421‑5677706
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑G‑‑CGCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCGCGCTCG > NC_002947_CJ‑RC/5677421‑5677716
|
GAGCGCCCAGCGCTGCGGACCCGCAAGGGCGGAAAGAAGAACCGCGGGGGCTGCTTCGCAGCCCTACCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑G‑‑‑GCCC < NB501016:282:H2V7GAFX2:2:21208:15382:16619/150‑1 (MQ=60)
CCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCG < NB501016:282:H2V7GAFX2:1:11208:20751:4630/151‑1 (MQ=60)
GGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACT < NB501016:282:H2V7GAFX2:1:21112:12795:15774/151‑1 (MQ=60)
CTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCGGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGGGTCGTGGTAGGGCCGCAAAGC‑Ggccccggcgggtttagggtgggggaaattaattt > NB501016:282:H2V7GAFX2:2:21110:12161:18904/1‑117 (MQ=60)
GATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTG > NB501016:282:H2V7GAFX2:4:21502:20743:2446/1‑151 (MQ=60)
ACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACC < NB501016:282:H2V7GAFX2:3:21512:1904:10459/151‑1 (MQ=60)
CCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATGTCTACTGGAGCGGCCTTGTGTCGTGCTAGGGCCGCAAAGC‑GGCCG‑CCTCGG‑GTTTCAGCTGGCGGAAATTAGTTCTGCTTgagaccg > NB501016:282:H2V7GAFX2:1:21107:14298:11787/1‑144 (MQ=60)
CCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCT > NB501016:282:H2V7GAFX2:3:21603:4431:4443/1‑151 (MQ=60)
GGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGCTAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGAC > NB501016:282:H2V7GAFX2:1:11109:10883:19880/1‑150 (MQ=60)
GTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTTATCTCTACAGGAGCGGCCTTGTGTCGTTATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTG < NB501016:282:H2V7GAFX2:2:11305:9932:14669/151‑1 (MQ=60)
CTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATT > NB501016:282:H2V7GAFX2:4:21407:15521:3686/1‑151 (MQ=60)
CTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGAT > NB501016:282:H2V7GAFX2:4:11509:17965:8294/1‑150 (MQ=60)
CTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCGCGG‑TTTTGAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACGGAT > NB501016:282:H2V7GAFX2:2:11301:17709:10600/1‑150 (MQ=60)
GCCCTTTCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGGCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGGCTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGG < NB501016:282:H2V7GAFX2:1:11302:7290:11202/151‑1 (MQ=60)
TATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTGAGCTGGCAGAAATTACTTGTGCTTCACACCTTCGACACTGATATCCAGGTCC > NB501016:282:H2V7GAFX2:4:21606:25585:14190/1‑149 (MQ=60)
CACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGT > NB501016:282:H2V7GAFX2:3:11609:5598:19401/1‑151 (MQ=60)
CACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG > NB501016:282:H2V7GAFX2:2:11211:26489:4504/1‑89 (MQ=60)
CAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTGAGCTGGCAGATATTACTTCTGCTTCACACCTTCGACACTGATATACAGGTGCAGGGTCTGCGT > NB501016:282:H2V7GAFX2:2:21101:3049:2570/1‑150 (MQ=60)
CTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG > NB501016:282:H2V7GAFX2:4:21501:20916:10640/1‑71 (MQ=60)
CAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCC > NB501016:282:H2V7GAFX2:4:21601:9796:10618/1‑151 (MQ=60)
AGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCT > NB501016:282:H2V7GAFX2:4:21406:3389:16272/1‑151 (MQ=60)
AGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTT < NB501016:282:H2V7GAFX2:3:11509:19148:13122/151‑1 (MQ=60)
ATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGAT < NB501016:282:H2V7GAFX2:1:21104:9580:17903/151‑1 (MQ=60)
ATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTG < NB501016:282:H2V7GAFX2:1:21311:25921:16748/127‑1 (MQ=60)
TTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGC > NB501016:282:H2V7GAFX2:2:11305:12526:12108/1‑151 (MQ=60)
CTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTAACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCG > NB501016:282:H2V7GAFX2:4:11605:9001:10345/1‑151 (MQ=60)
TGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCC < NB501016:282:H2V7GAFX2:2:21110:24330:12184/148‑1 (MQ=60)
TGATCTATACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTAGG‑TTTTCAGCTGGCAGAAATTACTTCTTCTTCACACCTTAGACACTTATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGA > NB501016:282:H2V7GAFX2:1:11104:23908:19105/1‑150 (MQ=60)
CTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGT < NB501016:282:H2V7GAFX2:4:11407:18456:7507/147‑1 (MQ=60)
AACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTC < NB501016:282:H2V7GAFX2:2:21110:9937:8294/151‑1 (MQ=60)
CAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAG < NB501016:282:H2V7GAFX2:2:11109:11193:7745/151‑1 (MQ=60)
GCCTTGTGTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTAACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCG > NB501016:282:H2V7GAFX2:1:11306:24751:17734/1‑151 (MQ=60)
TGTGTCGTGATAGGGCCACAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGT > NB501016:282:H2V7GAFX2:4:11410:13916:7602/1‑151 (MQ=60)
GTCGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGG < NB501016:282:H2V7GAFX2:1:21202:5535:20183/150‑1 (MQ=60)
CGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGG < NB501016:282:H2V7GAFX2:1:11105:9313:6301/151‑1 (MQ=60)
CGTGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGG < NB501016:282:H2V7GAFX2:3:11608:24104:14512/151‑1 (MQ=60)
TGATAGGGCCGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCG > NB501016:282:H2V7GAFX2:1:11201:2209:12949/1‑151 (MQ=60)
CGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCC > NB501016:282:H2V7GAFX2:2:11107:23034:8410/1‑151 (MQ=60)
CGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCC > NB501016:282:H2V7GAFX2:4:11502:15262:13205/1‑150 (MQ=60)
CGCAAAGCGG‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCC > NB501016:282:H2V7GAFX2:1:21309:14820:17885/1‑150 (MQ=60)
G‑‑CCCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCGCGCTCG > NB501016:282:H2V7GAFX2:2:11307:20377:2549/1‑151 (MQ=60)
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GAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑G‑‑CGCCCTCGG‑TTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCGCGCTCG > NC_002947_CJ‑RC/5677421‑5677716
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
