Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F59 I1 R1
|
58 |
78.7 |
3339874 |
98.5% |
3289775 |
147.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
5,677,566 |
+G |
intergenic (+113/+27) |
rhlE‑II → / ← yceI |
ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 5,677,565 | 1 | . | G | 97.4%
| 264.3
/ ‑1.0
| 77 | intergenic (+112/+28) | rhlE‑II/yceI | ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base G (46/29); total (48/29) |
| Fisher's exact test for biased strand distribution p-value = 5.24e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGGTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GC‑GCGCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCC > NC_002947_CJ‑RC/5677417‑5677706
|
cgGTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑gc < 1:10457/149‑1 (MQ=255)
tGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGACGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGCCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑gc‑ggc < 8:29532/149‑3 (MQ=255)
ccAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCg > 6:242577/1‑149 (MQ=255)
ccAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCg < 6:148843/149‑1 (MQ=255)
aGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCggg > 7:224191/1‑148 (MQ=255)
cgcTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTACTGCAGAGAATTTCTTGATCTCTACAGGAGCTGCCATGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGtat > 5:242925/1‑147 (MQ=37)
cggctgACCCGCAAGGGCTGATAGAAGTCCCGAGGGGGCTGCTTCGCAGCCCTATCACGACACACGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACCGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTc < 6:44710/147‑1 (MQ=37)
ccGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGc > 4:82314/1‑148 (MQ=255)
ccGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCACCCCTAACACGACACAAGGCCGCTCCTGCAGAGAAATTCTTGATAACTAAAGGAGCGGCCTTTTGTCCTGATATGGCCGCAAACGG‑GCCCCCGCGGGGTTGAGCTgggc > 4:7942/1‑147 (MQ=255)
gCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAg > 1:69469/1‑148 (MQ=255)
gCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAg > 6:202192/1‑148 (MQ=255)
aaGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGaaa > 6:272631/1‑149 (MQ=255)
aaGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGaaa > 7:108572/1‑149 (MQ=255)
aaGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCACAGAATTTCTTGATCTCTTCAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑TCGGCCCCCTCGGTTTTGAGCTGGCAGata > 4:322938/1‑147 (MQ=37)
cTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTGAGCTGGCAGAAATTACt > 7:394301/1‑149 (MQ=255)
aTAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCt > 2:96887/1‑149 (MQ=255)
gAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTTATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGc < 6:30692/148‑1 (MQ=255)
aGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTc < 4:149020/149‑1 (MQ=255)
ccGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTATGCTTCacac > 7:399391/1‑149 (MQ=255)
aGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCtt > 2:125698/1‑149 (MQ=255)
aGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGGGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCtt > 1:16358/1‑149 (MQ=255)
gggggCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTc > 7:272059/1‑149 (MQ=255)
gggCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGa < 4:198189/149‑1 (MQ=255)
ggCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGac < 2:319158/149‑1 (MQ=255)
tgctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACt > 2:340463/1‑149 (MQ=255)
tgctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCATGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCGCGGATTTAAGCTGGCAGAAATTAAATCAGATTCAAACCATAGAGACt > 2:165229/1‑149 (MQ=21)
ctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATGTCTACAGGAGCGGCGTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCGCTCGGTTTTCAGCTGGCAGGAATTGCTTCTGCTTGACACCTTCGAGACTGa > 1:98061/1‑149 (MQ=37)
ttCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGa > 8:307213/1‑148 (MQ=255)
ttCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCGTCGACACTGa > 3:91380/1‑148 (MQ=255)
gCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccag < 5:202192/149‑1 (MQ=255)
gCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccag < 5:386426/149‑1 (MQ=255)
gCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccag < 1:272575/149‑1 (MQ=255)
cTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCGGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtc > 6:30062/1‑149 (MQ=255)
cACGACCCACGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTTATTGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtccagg < 4:213584/149‑1 (MQ=39)
cACGACACAAGTCCGCTCCTGCATATAATTTCTTGATCTCTACAGGTGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtccagg < 4:102328/149‑1 (MQ=38)
aCGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAggg > 3:86589/1‑149 (MQ=255)
aCGACACAAGGCCGCTCCTGCAGAGAATTTCATGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTATTCAGCTGGCAGAAATTACATCTGCTTCACACCATCGACACTGAAAtccagctccaggc > 2:169667/1‑148 (MQ=37)
cGACACAAGGCCCCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGCGCAGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCGTCCAAACAGATATCCACGTCCAggg > 8:425275/1‑148 (MQ=37)
gaaacaAGGCCGCTCCTGCAGAGAATTTGTAGATCACTACAGGAGCCGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCCGGTTTCAGCTGGCAGAAAATACTTCATGTTCACACCTTCGACCGTGATATCCAGGTCCAGGCTc > 6:16328/4‑149 (MQ=25)
acaAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGACGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCTGAAATTAATTCTGCTTCACACCTTCGACACTGATATCCAGGTCAAgggggtgc > 6:133556/1‑144 (MQ=255)
aaGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCg > 8:203368/1‑148 (MQ=255)
gCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAg > 3:271110/1‑148 (MQ=255)
gCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGt < 1:96887/149‑1 (MQ=255)
ccGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCTCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTa < 4:271110/149‑1 (MQ=255)
gCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTGAGCTGGCAGAAATTACTTCTGCTTCACACCTTAGACACTGATATACAGGTCCAGGGTCTGCGAAGTAg > 3:235015/1‑148 (MQ=38)
cAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCg < 1:125698/147‑1 (MQ=255)
agagAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGc > 8:62976/1‑149 (MQ=255)
agagAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGc < 7:78367/149‑1 (MQ=255)
ttGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATg > 2:221159/1‑147 (MQ=255)
ttGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATg < 1:221159/147‑1 (MQ=255)
ttGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGcc > 3:189524/1‑149 (MQ=255)
gATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGcc < 5:147316/147‑1 (MQ=255)
aTCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑ACGGCCCCCTCGGTTTTCAGCAGGCAGAAATTAAATCTGCTTAACACATTAGACACAGATATCAAGGTACAGGGTATGCTAAGTAGCACCCGGGCCTTTGATTCCGaa > 6:274089/1‑149 (MQ=25)
tctcTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACGCCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCGCGCGGGGCTGTGATGCCGAAg > 6:383512/1‑149 (MQ=38)
ctACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCCGTTTTCAGCTGGCAGAAAATACATAAGCTTCAAACCTTCGACACAGATATACAGGTCCATGGTCATCGAAGTAGAACCCGGGCCATAGAATCCGAAGTcc > 5:220159/1‑148 (MQ=19)
tACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTc < 4:86589/147‑1 (MQ=255)
cAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgtt < 5:242577/148‑1 (MQ=255)
cAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GC‑GGCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgtt > 6:171768/1‑147 (MQ=255)
aGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCGTTGATGCCGAAGTCgttcaggt > 5:364563/1‑149 (MQ=255)
ggCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcaggttca < 3:404531/149‑1 (MQ=255)
gCCTTGTGTCGTGATAGGGCAGCAAA‑GCGGCACCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGATTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCtttaaggttcag > 6:289074/1‑149 (MQ=255)
tgtCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggt > 1:116432/1‑149 (MQ=255)
tgtCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtgg < 4:91380/148‑1 (MQ=255)
gtCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtg > 6:307199/1‑149 (MQ=255)
tCGTGATTGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtg < 4:325541/148‑1 (MQ=255)
tCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCGGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtg < 5:30062/148‑1 (MQ=255)
tCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtgg < 7:277120/149‑1 (MQ=255)
tCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtg < 1:180918/148‑1 (MQ=255)
gTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtggt < 7:190784/148‑1 (MQ=255)
gATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGc > 2:417571/1‑149 (MQ=255)
ggCCGCAAA‑GCGGCCCCCTGGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGa < 3:7942/149‑1 (MQ=255)
ggCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTg > 1:126873/1‑148 (MQ=255)
ggCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTg > 4:323180/1‑148 (MQ=255)
ggCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGGTCAGCGTGGTGGTGGCGTTg > 6:113476/1‑148 (MQ=255)
ggCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTAACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTg > 7:72248/1‑148 (MQ=255)
gCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGaa < 3:182962/149‑1 (MQ=255)
ccGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAg > 7:280053/1‑149 (MQ=255)
ccGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAg > 4:297706/1‑149 (MQ=255)
gCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGcc < 3:243389/149‑1 (MQ=255)
|
CGGTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GC‑GCGCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCC > NC_002947_CJ‑RC/5677417‑5677706
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCGGTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑GCGCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCGCGCTCG > NC_002947_CJ‑RC/5677416‑5677716
|
GCGGTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑G < NB501016:282:H2V7GAFX2:1:11102:19258:13897/151‑1 (MQ=60)
cccccgcgcggctcACCCGCAAGGCCTGAAACAAGTCCCGCGGGGGCGGCTTCGCACCCCTACCACCACACAAGGCCGCTCCTGCAGACAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCG < NB501016:282:H2V7GAFX2:2:21305:3106:4616/137‑1 (MQ=60)
CAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑Ggccccctcgggt > NB501016:282:H2V7GAFX2:4:21402:6132:11217/1‑139 (MQ=60)
GCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTACTGCAGAGAATTTCTTGATCTCTACAGGAGCTGCCATGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTATT > NB501016:282:H2V7GAFX2:3:21406:4062:4382/1‑151 (MQ=60)
GTGCTGACCCGCAAGGGCTTATTCAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAG < NB501016:282:H2V7GAFX2:2:21209:3886:7692/151‑1 (MQ=60)
CGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGA > NB501016:282:H2V7GAFX2:1:11112:16399:1788/1‑150 (MQ=60)
CAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAAT > NB501016:282:H2V7GAFX2:4:11506:10268:14880/1‑151 (MQ=60)
GCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTGAGCTGGCAGAAATTACTT > NB501016:282:H2V7GAFX2:4:21607:10706:6751/1‑151 (MQ=60)
TAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGCTAGGGCCGCAAAGCGGCCCC‑‑CGCGGTTTTCAGCTGGCAGATATTACTTCTGCT > NB501016:282:H2V7GAFX2:3:11512:3160:12064/1‑151 (MQ=60)
atacccgcGGGGGCTGCTTCCCAGCCCTTCCACCACACAAGCCCCCTCCTCCAGACAATTTCTTCATCTCTACAGGCGCGGCCTTGTGTGTTTATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCAC < NB501016:282:H2V7GAFX2:1:21104:9580:2516/143‑1 (MQ=60)
ACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTATGCTTCACACC > NB501016:282:H2V7GAFX2:4:21608:22905:4579/1‑151 (MQ=60)
GAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGGGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTC > NB501016:282:H2V7GAFX2:1:11103:15922:12256/1‑151 (MQ=60)
AGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCG > NB501016:282:H2V7GAFX2:4:21410:15451:10235/1‑151 (MQ=60)
GCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATGTCTACAGGAGCGGCGTTGTGTCGTGATAGGGCCGCAAAGC‑G‑GCCCGCTCGGTTTTCAGCTGGCAGGAATTGCTTCTGCTTGACACCTTCGAGACTGAT > NB501016:282:H2V7GAFX2:1:11204:19286:15315/1‑151 (MQ=60)
CTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCGTCGACACTGAT > NB501016:282:H2V7GAFX2:2:11204:3075:18022/1‑150 (MQ=60)
GCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCGGCTGGCAGAAATTACTTGTGCTTAACAACTTCGACACGGATATCC > NB501016:282:H2V7GAFX2:4:11502:1400:2383/1‑150 (MQ=60)
AGCCCTATCACGACACTAGGCCGCTCCTGGAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGG < NB501016:282:H2V7GAFX2:1:21110:12603:11323/151‑1 (MQ=60)
AGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGG < NB501016:282:H2V7GAFX2:3:21607:16262:4831/151‑1 (MQ=60)
AGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGG < NB501016:282:H2V7GAFX2:3:11610:6858:16983/151‑1 (MQ=60)
CACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTAGACACTGATATCCAGGTCCAGGGT > NB501016:282:H2V7GAFX2:2:11204:14829:2205/1‑151 (MQ=60)
GGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTA < NB501016:282:H2V7GAFX2:1:11204:8412:11802/151‑1 (MQ=60)
GGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTATGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGT > NB501016:282:H2V7GAFX2:2:21111:9414:11680/1‑150 (MQ=60)
CGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTGAGCTGGCAGAAATTACTTCTGCTTCACACCTTAGACACTGATATACAGGTCCAGGGTCTGCGAAGTAGC > NB501016:282:H2V7GAFX2:2:21104:24183:20194/1‑150 (MQ=60)
GCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGG < NB501016:282:H2V7GAFX2:1:11209:6695:8092/149‑1 (MQ=60)
CAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCC < NB501016:282:H2V7GAFX2:4:11501:2028:12430/151‑1 (MQ=60)
CTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCG > NB501016:282:H2V7GAFX2:2:11309:10070:3931/1‑151 (MQ=60)
CTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGC < NB501016:282:H2V7GAFX2:1:21101:6943:18981/149‑1 (MQ=60)
TGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCG < NB501016:282:H2V7GAFX2:3:11602:21149:2392/149‑1 (MQ=60)
ATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CACGGTTTTCATCTGGCAGAAATTACTTCTTCTTCACACCTTAGACACTGATATCCAGGACCAGGGTCTGCGAAGTAGCACCCGCGCCTTTGATGCCGAAGT > NB501016:282:H2V7GAFX2:4:11606:8120:9116/1‑151 (MQ=60)
ACTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCCGTTTTCAGCTGGCAGAAAATACATAAGCTTCAAACCTTCGACACAGATATACAGGTCCATGGTCATCGAAGTAGAACCCGGGCCatagaatccgaagtcct > NB501016:282:H2V7GAFX2:3:21401:22717:18095/1‑134 (MQ=42)
ACCGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTC < NB501016:282:H2V7GAFX2:3:21406:14463:3155/150‑1 (MQ=60)
GAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCGTTGATGCCGAAGTCGTTCAGGTT > NB501016:282:H2V7GAFX2:3:21603:4224:13642/1‑151 (MQ=60)
GGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAG < NB501016:282:H2V7GAFX2:2:21312:10800:16922/151‑1 (MQ=60)
GTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTG > NB501016:282:H2V7GAFX2:1:11207:2628:16668/1‑151 (MQ=60)
GTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCGGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGG < NB501016:282:H2V7GAFX2:3:11406:11658:5107/150‑1 (MQ=60)
GTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGT < NB501016:282:H2V7GAFX2:4:21411:11706:6907/151‑1 (MQ=60)
GTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGG < NB501016:282:H2V7GAFX2:1:11306:18001:19772/150‑1 (MQ=60)
CGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTG < NB501016:282:H2V7GAFX2:4:11608:20781:15608/150‑1 (MQ=60)
GGGCCGCAAAGCGGCCCC‑‑CTGGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAA < NB501016:282:H2V7GAFX2:2:11102:23577:9094/151‑1 (MQ=60)
GGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGA > NB501016:282:H2V7GAFX2:1:11209:10112:11636/1‑150 (MQ=60)
GGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTAACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGA > NB501016:282:H2V7GAFX2:4:11412:5020:11667/1‑150 (MQ=60)
GGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAG < NB501016:282:H2V7GAFX2:2:11308:10112:3279/151‑1 (MQ=60)
GCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGC > NB501016:282:H2V7GAFX2:4:21411:3394:15868/1‑151 (MQ=60)
CGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCA < NB501016:282:H2V7GAFX2:2:21106:21750:11055/151‑1 (MQ=60)
GCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCGCGCTCG < NB501016:282:H2V7GAFX2:4:11507:13690:5801/151‑1 (MQ=60)
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GCGGTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑GCGCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCGCGCTCG > NC_002947_CJ‑RC/5677416‑5677716
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
