Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F13 I0 R1 213 60.4 2554362 98.6% 2518600 147.1

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGGTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑GCGCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCG  >  NC_002947_CJ‑RC/5677417‑5677710
                                                                                                                                                      |                                                                                                                                                
CGGTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑GG                                                                                                                                                 <  NB501016:282:H2V7GAFX2:4:11610:19720:10490/151‑1 (MQ=60)
  GTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑G‑GCC                                                                                                                                              <  NB501016:282:H2V7GAFX2:3:21405:24199:12762/151‑1 (MQ=60)
                CTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTC                                                                                                                                    >  NB501016:282:H2V7GAFX2:4:21610:18530:12468/1‑149 (MQ=60)
                 TGCTGACCCGCAAGGGCTGATAGAAGTACCGA‑GGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCT                                                                                                                                >  NB501016:282:H2V7GAFX2:1:11105:23644:9464/1‑151 (MQ=60)
                                   GATAGAAGTACCGCGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCT                                                                                                                <  NB501016:282:H2V7GAFX2:3:21505:26230:7790/150‑1 (MQ=60)
                                            ACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGGTAGGGCCGCAAAGCGGCCCCCGCGGTTTTGAGCTGGCCGAAATTTCTTCTGCTTCACACC                                                                                                      >  NB501016:282:H2V7GAFX2:2:21210:12612:7131/1‑151 (MQ=60)
                                              CGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCGCGGTTTTCCGCTGGCAGAAATTACTTCTGCTTCACACCGT                                                                                                    >  NB501016:282:H2V7GAFX2:3:11610:3489:19858/1‑151 (MQ=60)
                                                    GGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGCTTGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACCCCTTCGACAC                                                                                              >  NB501016:282:H2V7GAFX2:2:11304:13299:13850/1‑151 (MQ=60)
                                                      CTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGGTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGCCACTG                                                                                            >  NB501016:282:H2V7GAFX2:2:11107:23903:16334/1‑151 (MQ=60)
                                                              CAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCC                                                                                      >  NB501016:282:H2V7GAFX2:1:21102:9593:6379/1‑149 (MQ=60)
                                                                   CTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCC                                                                                >  NB501016:282:H2V7GAFX2:3:11606:23047:11418/1‑150 (MQ=60)
                                                                           ACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCGCGGGTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCGTCGACACAGATATACAGGTCCAGGGTCTGG                                                                       >  NB501016:282:H2V7GAFX2:4:21611:1390:7402/1‑151 (MQ=60)
                                                                              caaggccgctcctgtagagatcaagaaatTCTCTGCAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGA                                                                     >  NB501016:282:H2V7GAFX2:3:21401:14362:7664/30‑150 (MQ=60)
                                                                                        CCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCATAGACACTGATATACAGGTCCAGGGTCTTCGAAGTAGCACCCG                                                          >  NB501016:282:H2V7GAFX2:2:21307:22007:8020/1‑151 (MQ=60)
                                                                                         CTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTC                                                                                 <  NB501016:282:H2V7GAFX2:1:21106:24468:18731/127‑1 (MQ=60)
                                                                                           GCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGG                                                        <  NB501016:282:H2V7GAFX2:1:21302:3600:13563/150‑1 (MQ=60)
                                                                                            CAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCC                                                      >  NB501016:282:H2V7GAFX2:1:21305:24167:17614/1‑151 (MQ=60)
                                                                                            CAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTAATTCTGC                                                                                                              >  NB501016:282:H2V7GAFX2:1:21108:12798:5228/1‑95 (MQ=60)
                                                                                             AGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGCCACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCG                                                     >  NB501016:282:H2V7GAFX2:1:11204:1134:9918/1‑151 (MQ=60)
                                                                                              gtgtctcttccGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTT                                                    <  NB501016:282:H2V7GAFX2:3:21401:7822:5766/140‑1 (MQ=60)
                                                                                                              CTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTT                                    >  NB501016:282:H2V7GAFX2:3:21511:5571:1617/1‑151 (MQ=60)
                                                                                                              CTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCGCGGGTTTCAGCTGGCACAAATTAATTCTGCTTCACACCTTCCACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCCCCCGGGCCTTTGCTGCCGAAGTCGTT                                    >  NB501016:282:H2V7GAFX2:2:21211:13657:19613/1‑151 (MQ=60)
                                                                                                                ACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTC                                   <  NB501016:282:H2V7GAFX2:4:21407:26839:16722/150‑1 (MQ=60)
                                                                                                                ACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTC                                   <  NB501016:282:H2V7GAFX2:4:21408:1255:16717/150‑1 (MQ=60)
                                                                                                                 CAGGAGCGGCCTTGTGTCGTTATTGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAG                                 <  NB501016:282:H2V7GAFX2:2:21103:23921:3978/151‑1 (MQ=60)
                                                                                                                        GGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTAAGCTGGCAGAAATTAATTATGCTTCACACCTTCGACACTGATATAC                                                                                      >  NB501016:282:H2V7GAFX2:2:11111:18558:20157/1‑91 (MQ=60)
                                                                                                                         GCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTAATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCG                         <  NB501016:282:H2V7GAFX2:4:21608:8145:20103/151‑1 (MQ=60)
                                                                                                                             TGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGG                      <  NB501016:282:H2V7GAFX2:1:11108:18724:6532/150‑1 (MQ=60)
                                                                                                                                     GATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCG              <  NB501016:282:H2V7GAFX2:2:11312:25077:8223/150‑1 (MQ=60)
                                                                                                                                          GGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAG        <  NB501016:282:H2V7GAFX2:3:11502:14898:11980/151‑1 (MQ=60)
                                                                                                                                          GGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAG        <  NB501016:282:H2V7GAFX2:2:21206:15908:9943/151‑1 (MQ=60)
                                                                                                                                            CCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCC      <  NB501016:282:H2V7GAFX2:4:11512:3255:7932/151‑1 (MQ=60)
                                                                                                                                                AAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCG  <  NB501016:282:H2V7GAFX2:4:21405:5932:13342/151‑1 (MQ=60)
                                                                                                                                                      |                                                                                                                                                
CGGTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑GCGCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCG  >  NC_002947_CJ‑RC/5677417‑5677710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑