Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F14 I1 R1
|
57 |
86.1 |
3667460 |
98.7% |
3619783 |
146.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
5,677,566 |
+G |
intergenic (+113/+27) |
rhlE‑II → / ← yceI |
ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 5,677,565 | 1 | . | G | 96.2%
| 277.0
/ 3.2
| 79 | intergenic (+112/+28) | rhlE‑II/yceI | ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base G (39/37); total (41/38) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 |
GGTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑C‑GCG‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGC > NC_002947_CJ‑RC/5677418‑5677705
|
ggTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGCGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAg‑c‑g < 4:208517/149‑1 (MQ=255)
gTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAg‑c‑gg < 2:277048/149‑2 (MQ=255)
tGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAg‑c‑ggc < 4:57963/149‑3 (MQ=255)
gcgcCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAg‑c‑ggccc < 7:292573/148‑5 (MQ=255)
cgcCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAg‑c‑ggccccc > 6:202787/1‑143 (MQ=255)
ccAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCg < 6:37785/149‑1 (MQ=255)
ccAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCg > 1:25186/1‑149 (MQ=255)
ccAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCg < 5:202787/149‑1 (MQ=255)
aGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGt > 2:154696/1‑149 (MQ=255)
gcgcTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGtt < 4:342301/149‑1 (MQ=255)
ctgctgACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTc < 1:134894/149‑1 (MQ=255)
tgctgACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGttt > 7:101265/1‑146 (MQ=255)
ctgACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGc < 2:204114/149‑1 (MQ=255)
ccGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCAGCACAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGTGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCtccca > 2:66555/1‑145 (MQ=37)
gggCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAAtt > 3:206462/1‑149 (MQ=255)
gggCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAAt < 7:370966/148‑1 (MQ=255)
gCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCACGGTTTTCAGCTGGCAGAAATTAc > 2:201656/1‑149 (MQ=255)
cTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACt > 5:348621/1‑149 (MQ=255)
tGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACt > 5:264211/1‑148 (MQ=255)
aTAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑C‑GGGCCCCGCGGTTTTCAGCTGGCAGAAATTACTTCt > 1:123172/1‑149 (MQ=255)
aaGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCtt < 4:312447/149‑1 (MQ=255)
gTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTca < 6:368568/149‑1 (MQ=255)
gTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTca < 4:344102/149‑1 (MQ=255)
ccGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGTG‑GCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCacac > 2:269665/1‑149 (MQ=255)
gAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCt > 5:406794/1‑149 (MQ=255)
ggCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCg > 8:316694/1‑147 (MQ=255)
ctgcgaaGCCCTATCACGACACAAGGCCGCTCCTGCAGATAATTTCTTGATCGCTACTGGAGCGGCCTTGTGTCGTTATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTg < 5:28794/142‑1 (MQ=37)
gCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGat < 7:238698/146‑1 (MQ=255)
gCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGat < 7:316694/146‑1 (MQ=255)
agccagaTCACGACACAAGGCCGCTCCTGCAGAGATTTTCTTGATCTCTACAGTAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtcca < 4:391938/143‑1 (MQ=37)
gCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTTATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccag < 1:154696/149‑1 (MQ=255)
gCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGTG‑GCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccag < 1:269665/149‑1 (MQ=255)
ccTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTGTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccagg > 7:385351/1‑148 (MQ=255)
cACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtccagg > 2:302496/1‑149 (MQ=255)
aCGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtccagg < 2:25186/148‑1 (MQ=255)
ggCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAg > 1:38482/1‑149 (MQ=255)
ccGCTCCTGCAGAGTATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGAAAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCGAGGTCCAGGGTCTGCGAAGt < 8:430586/148‑1 (MQ=39)
ccGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGt < 8:324495/148‑1 (MQ=255)
gCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGTCACTGATATCCAGGTCCAGGGTCTGCGAAGTAg > 1:253159/1‑148 (MQ=255)
cTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCAccc > 2:191809/1‑149 (MQ=255)
gCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCgg > 4:194570/1‑149 (MQ=255)
gCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCgg > 4:144714/1‑149 (MQ=255)
cAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCggg > 3:22283/1‑149 (MQ=255)
agagAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGc > 1:313774/1‑149 (MQ=255)
gagaATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGc > 8:168039/1‑148 (MQ=255)
gaATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCtt < 6:264211/149‑1 (MQ=255)
aTTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCttt < 8:1788/148‑1 (MQ=255)
tttCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGa > 2:171250/1‑149 (MQ=255)
ttCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGAt > 6:158844/1‑149 (MQ=255)
ttCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGAt > 2:136835/1‑149 (MQ=255)
aTCTCTACGGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGaa < 1:421576/149‑1 (MQ=255)
aTCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCg > 2:421816/1‑147 (MQ=255)
cAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttc < 2:287701/149‑1 (MQ=255)
cAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttc < 6:348621/149‑1 (MQ=255)
cAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgtt > 6:408563/1‑148 (MQ=255)
cAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgtt < 4:206462/148‑1 (MQ=255)
cAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCg < 6:40621/146‑1 (MQ=255)
aGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgtt < 7:168039/147‑1 (MQ=255)
ggAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcag < 3:144714/149‑1 (MQ=255)
gAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcag > 8:47103/1‑148 (MQ=255)
gCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcaggttcag > 1:40045/1‑149 (MQ=255)
gCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcaggttca > 7:199363/1‑148 (MQ=255)
ccTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcaggttc < 1:36417/146‑1 (MQ=255)
ccTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcaggttc > 2:36417/1‑146 (MQ=255)
cTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGc < 8:301906/148‑1 (MQ=255)
gtgtCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtg < 6:70345/148‑1 (MQ=255)
gtgtCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgt < 2:38482/147‑1 (MQ=255)
tgtCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtgg < 6:426129/148‑1 (MQ=255)
tCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtg > 7:292244/1‑148 (MQ=255)
gttaTAGGGCCGCAAAG‑CGGCC‑CCCTCTGTTTTCAGCTGGAAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTATCAACCGGGCATTTGATGAAGAAGTCGTTCAGGTTCAGCgtggtggtg < 1:303167/146‑1 (MQ=255)
gTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtggt > 7:424955/1‑148 (MQ=255)
tGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtggt < 7:242453/147‑1 (MQ=255)
aTAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCg > 4:203090/1‑149 (MQ=255)
tAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGt < 2:386439/149‑1 (MQ=255)
aGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGt > 8:143785/1‑148 (MQ=255)
gggCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGtt > 3:2590/1‑148 (MQ=255)
ggCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtcca > 7:132790/1‑80 (MQ=255)
ggCCGCAAAG‑CGGCC‑CCCACGGTTTTCAGCTGGCAGAAATTACTTATGCTTCACACCTTCGACACAGATATCCAGGTCCAGGGTCTGCGAACTAGCACCCGGGCCATTGAAGCCGAACTCGTTCAGGATCAGCgt > 4:105291/1‑135 (MQ=255)
gCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtccag < 8:132790/80‑1 (MQ=255)
gCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGaa < 3:203090/149‑1 (MQ=255)
gCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGaa < 1:201656/149‑1 (MQ=255)
gCCGCAAAG‑CGGCC‑CACTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTg > 4:31736/1‑147 (MQ=255)
cGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAg > 7:23342/1‑148 (MQ=255)
cGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGc > 5:28778/1‑149 (MQ=255)
|
GGTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑C‑GCG‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGC > NC_002947_CJ‑RC/5677418‑5677705
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑C‑GCG‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCGCGCTCG > NC_002947_CJ‑RC/5677421‑5677716
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GAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑C‑Ggcccc < NB501016:282:H2V7GAFX2:4:21409:3137:11052/151‑6 (MQ=60)
CCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGG > NB501016:282:H2V7GAFX2:1:11104:2258:11759/1‑151 (MQ=60)
CCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGG < NB501016:282:H2V7GAFX2:3:11607:20358:17784/151‑1 (MQ=60)
CCCGCGCTGCTGACCCGCAAGGGCTGATAGACGTACCGAGGGGGCTGCTTCCCAGCCCTACCACGACACAAGCCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGT < NB501016:282:H2V7GAFX2:2:21302:20865:5640/151‑1 (MQ=60)
CCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCAGTAGACGAGCGGCCTTGTGTCGTGATACGGCCGCAAAG‑C‑Ggccacctcggt > NB501016:282:H2V7GAFX2:1:21108:24263:14642/1‑140 (MQ=60)
GCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCA < NB501016:282:H2V7GAFX2:1:11208:3677:18938/151‑1 (MQ=60)
CTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTC > NB501016:282:H2V7GAFX2:4:11503:21781:19677/1‑149 (MQ=60)
cacccccaagggattaactaagtcccgcggggccgGCTTCGCACCCCTATCACCACACAAGGCCGCCCCTGCATACAATTTCTTCACCTCTACCGCAGGGGCCTTGGGTGGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGC < NB501016:282:H2V7GAFX2:2:11306:12167:2117/116‑1 (MQ=29)
AAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATT < NB501016:282:H2V7GAFX2:4:21509:7972:9793/151‑1 (MQ=60)
AGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCCGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTGTACAGGAGCGGCCTTGTGTCGTGGTAGGGCCGGAAAG‑C‑Ggcccccgcgggtttgaggtgggagatgttt > NB501016:282:H2V7GAFX2:2:11208:8027:19445/1‑121 (MQ=60)
AGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTT > NB501016:282:H2V7GAFX2:2:11309:11170:6504/1‑151 (MQ=60)
GCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTT > NB501016:282:H2V7GAFX2:3:21507:2420:6894/1‑151 (MQ=60)
CTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTT > NB501016:282:H2V7GAFX2:3:21405:5047:12018/1‑150 (MQ=60)
GATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑C‑GGGCCCCGCGGTTTTCAGCTGGCAGAAATTACTTCTG > NB501016:282:H2V7GAFX2:1:11207:13173:3601/1‑151 (MQ=60)
AGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTGTTGATCTCTACAGGAGCGGCCTTGTGTGGTGGTAGGGCCGCAAAG‑CGGCC‑CCCGCGGGTTTCAGCTGGGAGAAATTtcttgtggtt > NB501016:282:H2V7GAFX2:2:11310:3116:3440/1‑141 (MQ=60)
CGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTT > NB501016:282:H2V7GAFX2:3:21604:24399:4281/1‑151 (MQ=60)
GGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATTGGGCCGCAAAG‑CGGCC‑CCCGCGGTTTTGAGCTGGCAGAAATTACTTATGCTTGACACCTTCGACAC > NB501016:282:H2V7GAFX2:2:21101:19641:8058/1‑151 (MQ=60)
GCTGCGAAGCCCTATCACGACACAAGGCCGCTCCTGCAGATAATTTCTTGATCGCTACTGGAGCGGCCTTGTGTCGTTATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGA < NB501016:282:H2V7GAFX2:3:11405:1960:10995/150‑1 (MQ=60)
TCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGGAGAAATTACTTCTGCTTCACACCTTCGACACTGATATT > NB501016:282:H2V7GAFX2:4:21506:8253:13305/1‑151 (MQ=60)
TCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATA < NB501016:282:H2V7GAFX2:4:21401:16525:10262/149‑1 (MQ=60)
TCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATA < NB501016:282:H2V7GAFX2:4:21501:4487:1383/149‑1 (MQ=60)
AGCCCTATCACGACACAAGGCCGCTCCTGCATAGAATTTCTTTATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGG < NB501016:282:H2V7GAFX2:1:11211:12913:19899/151‑1 (MQ=60)
AGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGTG‑GCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGG < NB501016:282:H2V7GAFX2:1:21105:12625:18064/151‑1 (MQ=60)
CCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTGTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTC > NB501016:282:H2V7GAFX2:4:21511:4630:12791/1‑151 (MQ=60)
ACGACACTAGGCCGCTCCTGCAGATATTTTCTTGTTCTCTACAGGAGCGGCCTTGTGTCGTGTTAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTC < NB501016:282:H2V7GAFX2:3:11409:9194:10426/151‑1 (MQ=60)
AGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGT > NB501016:282:H2V7GAFX2:1:11106:11483:10129/1‑151 (MQ=60)
CGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGTCACTGATATCCAGGTCCAGGGTCTGCGAAGTAGC > NB501016:282:H2V7GAFX2:1:21103:24444:9108/1‑150 (MQ=60)
GCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGC > NB501016:282:H2V7GAFX2:2:11104:24804:12584/1‑151 (MQ=60)
CAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCC > NB501016:282:H2V7GAFX2:1:21112:7912:16287/1‑151 (MQ=60)
CATCTCTACGGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAG < NB501016:282:H2V7GAFX2:1:21306:24052:14370/151‑1 (MQ=60)
cccctcccggcggGGCCTTGTTTCGTGATAGGGCCGCAACG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAG < NB501016:282:H2V7GAFX2:1:21311:8402:8191/136‑1 (MQ=60)
ACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTC < NB501016:282:H2V7GAFX2:4:11602:3420:5712/150‑1 (MQ=60)
AGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGG < NB501016:282:H2V7GAFX2:2:11211:6178:20020/151‑1 (MQ=60)
GGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGC > NB501016:282:H2V7GAFX2:1:11106:1428:14493/1‑151 (MQ=60)
GGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGC > NB501016:282:H2V7GAFX2:4:11607:16151:5980/1‑151 (MQ=60)
GCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCA < NB501016:282:H2V7GAFX2:1:11106:13727:4465/148‑1 (MQ=60)
GTCGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGT > NB501016:282:H2V7GAFX2:4:21409:3741:10108/1‑151 (MQ=60)
GTCGTGATACGGCCGCAAAG‑CGGCC‑CCCTCGGGTTTCAGCTGGCAGAAATTACTTCTTCTTAACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCATTGATGCCGAATTCGTTGAGGTTGAGAGTGGTGGT > NB501016:282:H2V7GAFX2:2:11101:18373:4172/1‑151 (MQ=60)
ggttATAGGGCCGCAAAG‑CGGCC‑CCCTCTGTTTTCAGCTGGAAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTATCAACCGGGCATTTGATGAAGAAGTCGTTCAGGTTCAGCGTGGTGGTGG < NB501016:282:H2V7GAFX2:1:21111:26217:3684/147‑1 (MQ=60)
CGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGG > NB501016:282:H2V7GAFX2:4:21605:12027:18240/1‑151 (MQ=60)
CGTGATAGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTG < NB501016:282:H2V7GAFX2:4:21402:16897:2146/150‑1 (MQ=60)
AGGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTG > NB501016:282:H2V7GAFX2:2:11101:14055:9152/1‑150 (MQ=60)
GGGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGG > NB501016:282:H2V7GAFX2:4:11508:11885:17076/1‑83 (MQ=60)
GGCCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAG < NB501016:282:H2V7GAFX2:1:11307:10363:8618/151‑1 (MQ=60)
GGCCGAAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAG < NB501016:282:H2V7GAFX2:2:11308:2588:16294/151‑1 (MQ=60)
CCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCC > NB501016:282:H2V7GAFX2:4:11404:1798:10637/1‑151 (MQ=60)
CCGCAAAG‑CGGCC‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCC > NB501016:282:H2V7GAFX2:3:11405:7175:10970/1‑151 (MQ=60)
GCC‑CCCTGGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGTTATCCAGGTCCAGTGTCTGCGAAGAAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCTGCGTGGTGGTGGCGTTGAAGCCAGCGCGCTCG < NB501016:282:H2V7GAFX2:2:21304:22635:11691/151‑1 (MQ=60)
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GAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑C‑GCG‑CCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCGCGCTCG > NC_002947_CJ‑RC/5677421‑5677716
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
