Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A19 F106 I1 R1 24 58.2 1363720 92.2% 1257349 135.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP000730 478,502 C→A D342E (GAC→GAA)  ndhF → NADH dehydrogenase (ubiquinone)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730478,5020CA98.6% 219.4 / NA 74D342E (GAC→GAA) ndhFNADH dehydrogenase (ubiquinone)
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base A (30/42);  minor base G (0/1);  total (30/44)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TGCATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGT  >  CP000730/478373‑478627
                                                                                                                                  |                                                                                                                             
tgCATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTTAAGAAGCTTa                                                                                                                          <  1:472093/135‑1 (MQ=255)
tgCATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTa                                                                                                                          >  2:664170/1‑135 (MQ=255)
tgCATTGGGTGTATATTCAACAGCGATTATTCATTTAATATGGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGACGCGATCCAATATTCCAAAACAAGCATCGGCTAAAGAAGCTTa                                                                                                                          >  1:429653/1‑135 (MQ=255)
 gCATTGGGTGTATATTCAGCAGCAATTATTCATTTAATATTGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAGGAAGCTTAt                                                                                                                         >  1:558390/1‑135 (MQ=255)
  cATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTA‑TTTTTAAAGGAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATTTTCCAAACACAGCATCTGCTAAAGAAGCTTATg                                                                                                                        >  2:179712/1‑135 (MQ=255)
  cATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATg                                                                                                                        >  2:431253/1‑135 (MQ=255)
  cATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATg                                                                                                                        >  2:196998/1‑135 (MQ=255)
  cATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAAGCAGATTCTATCGTGAAGCGCTTCAATATTCCAAAACAAGAATCTGCTAAAGAAGCTTaga                                                                                                                        >  2:13192/1‑133 (MQ=255)
     tGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCt                                                                                                                     <  1:62458/135‑1 (MQ=255)
     tGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATATGCTAAAGAAGCTTATGGCt                                                                                                                     >  2:583111/1‑135 (MQ=255)
       ggTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTgg                                                                                                                   <  2:481709/135‑1 (MQ=255)
       ggTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTgg                                                                                                                   <  2:552120/135‑1 (MQ=255)
         tgtATATTCAGCAGCGATTATTCATTTAATATTGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGAt                                                                                                                 <  1:385446/135‑1 (MQ=255)
              atTCAGCAGCGATTATTCATTTAATATTGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGTAGCTTATGGCTGGATTGTCa                                                                                                            <  1:332246/135‑1 (MQ=255)
                tCAGCAGCGATTATTCATTTAATATTGCACGGTA‑TTTTTAAAGCAACATTATGTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATg                                                                                                          <  2:166734/135‑1 (MQ=255)
                      gcGATTATTCATTTAATATTGCACGGTATTTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGAACg                                                                                                     >  2:476266/1‑135 (MQ=255)
                        gATTATTCATTTAATATTACACGGTA‑TTTTTATATCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGTTGGATTGTCATGGGACgtgt                                                                                                  >  2:140656/1‑135 (MQ=255)
                         attattCATTTAATATTTCACGTTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAGGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTa                                                                                                 <  2:553422/135‑1 (MQ=255)
                         attattCATTTAATATTGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTGTAACTTTAAGCGTTTAAATATTGCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTa                                                                                                 <  2:40432/135‑1 (MQ=255)
                            attCATTTAATATTGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAATACAAGCATCTGCTAAAGTTGTTTATGGCTGGATTGTGATGGGACGTGTAtga                                                                                              <  1:206311/135‑3 (MQ=255)
                            attCATTTAATATTGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTa                                                                                              >  1:680579/1‑135 (MQ=255)
                              tCATTTAATATTGCACGGTA‑TTTTTAAAGCAACATAATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGc                                                                                            >  1:103961/1‑135 (MQ=255)
                               cATTTAATATTGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCt                                                                                           >  1:314334/1‑135 (MQ=255)
                               cATTTAATATTGCACGGTA‑ATATTAAAGCAACATTATTTTTACAATAAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGcg                                                                                           >  1:502811/1‑134 (MQ=255)
                                 tttAATATTGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTATATTAGCtat                                                                                         <  1:468896/135‑1 (MQ=255)
                                         tGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCATGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATTTGCTAAAGAAGCTTATGTCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTgg                                                                                 <  1:249177/135‑1 (MQ=255)
                                         tGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATTGGACGTGTATTAGCTATTATCGTgg                                                                                 <  1:13915/135‑1 (MQ=255)
                                                tA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGGGTATTAGCTATTATCGTGGCATTTCt                                                                          >  2:297654/1‑135 (MQ=255)
                                                          aGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGAt                                                                 <  1:208146/135‑1 (MQ=255)
                                                           gCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGAAGTGTTTTAGCTATTATCGAGGCATTTCTATTTTGGATg                                                                <  1:372333/135‑1 (MQ=255)
                                                            cAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTAAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGa                                                               <  2:198469/135‑1 (MQ=255)
                                                              aCATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGagt                                                             <  1:47604/135‑1 (MQ=255)
                                                                attattTTTACAATCAGGTTCTATCGTGAAGCTATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGagtag                                                           <  1:680381/135‑1 (MQ=255)
                                                                attattTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACACGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGTACGTGTATTAGCTATTATCGTGGTATTTCTATTTTGGATGagtag                                                           <  1:275060/135‑1 (MQ=255)
                                                                attattTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGagtag                                                           <  1:153416/135‑1 (MQ=255)
                                                                 ttattTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGATGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGagtagt                                                          <  1:98601/135‑1 (MQ=255)
                                                                 ttattTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTTTATTTTGGATGagtagt                                                          <  1:560700/135‑1 (MQ=255)
                                                                   attTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTTTATTGTCCTGGTACTTTTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGa                                                        <  1:664170/135‑1 (MQ=255)
                                                                   attTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGa                                                        >  2:258086/1‑135 (MQ=255)
                                                                   atgtttACACTCAGGATTTATCGTGAAGCGATTAAATCTACAACAAACCGCAAATCATTCGAAGGCGTATGGCTGGATTGTCCTGGGACGTGTATGATCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGa                                                        <  2:429653/132‑1 (MQ=255)
                                                                     ttttACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACa                                                      <  1:58686/135‑1 (MQ=255)
                                                                               gggTTCTATCGTGGAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTTTTATTGTGTTATTTTTTTTTTGGATGAGTAGTGACAGAAGTGCata                                            <  1:233615/134‑1 (MQ=255)
                                                                                 gTTCTATCGTGAAGCGATACAATATTCCAAAACAAGCATCTACTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATg                                          >  1:546376/1‑135 (MQ=255)
                                                                                   tCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGaa                                        >  1:529291/1‑135 (MQ=255)
                                                                                   tCTATCGGGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGaa                                        <  1:16373/135‑1 (MQ=255)
                                                                                    cTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCTTATGAAg                                       <  1:431253/135‑1 (MQ=255)
                                                                                    cTATCGTGAAGCGATTCAATATTCCAAAACAAGAATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAg                                       >  1:519783/1‑135 (MQ=255)
                                                                                     tATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAgt                                      >  1:13267/1‑135 (MQ=255)
                                                                                      aTCGTGAAGCGATTCAATATTCCAAAACAAGCATATGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATAGTGGCAATTCGATTTTGGATGAGTAGGGAACGAAGTGAATATGaaagg                                     >  2:513185/1‑132 (MQ=255)
                                                                                       tCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAgtgt                                    <  1:196998/135‑1 (MQ=255)
                                                                                        cGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTTTATTTTGGATGAGTAGTGATAGAAGTGCATATGAAGTGtt                                   <  1:221568/135‑1 (MQ=255)
                                                                                         gTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGAGAGAAGTGCATATGAAGTGTTa                                  >  2:454040/1‑135 (MQ=255)
                                                                                                gcttCAATATTTCAAAAAAAACATCAGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCAc                           >  1:282429/3‑135 (MQ=255)
                                                                                                gATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGCCAGAAGTGCATATGAAGTGTTATGTGCag                           >  2:232507/1‑134 (MQ=255)
                                                                                                gATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTACGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCAc                           >  1:136816/1‑135 (MQ=255)
                                                                                                gATTCAATATTCCAAAACAAACATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTAGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCAc                           >  1:428448/1‑135 (MQ=255)
                                                                                                 aTTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGATGTGTTTATGAAGTGTTAAGTGCACt                          <  1:332031/135‑1 (MQ=255)
                                                                                                 aTTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACt                          <  2:680579/135‑1 (MQ=255)
                                                                                                 aTTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACt                          <  2:13267/135‑1 (MQ=255)
                                                                                                  ttCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGTATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCAcgc                         <  1:178475/135‑3 (MQ=255)
                                                                                                      atatTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTc                     >  1:609098/1‑135 (MQ=255)
                                                                                                      atatTCCAAAACAAGCATCTACAAAAAAAACTAATGACTAGATTGTCAAAGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTc                     >  1:112282/1‑135 (MQ=255)
                                                                                                         ttCCAAACCAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAg                  <  2:502327/135‑1 (MQ=255)
                                                                                                          tCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGATTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAgg                 <  1:391466/135‑1 (MQ=255)
                                                                                                          tCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAgg                 <  1:11506/135‑1 (MQ=255)
                                                                                                                 cAATCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCa          <  2:605463/135‑1 (MQ=255)
                                                                                                                 cAAGCATCTGCTAATGAAGCTTATGGCTGGAGTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATCAGTAGTGACAGAAGTGCATATGAAGTGTTAATTGCACTCATTCTAGGATGGTCa          <  2:547704/135‑1 (MQ=255)
                                                                                                                 cAAGCATCTGCTAAAGAATCTTAGGGCGGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCa          <  2:280768/135‑1 (MQ=255)
                                                                                                                 cAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCa          <  1:140656/135‑1 (MQ=255)
                                                                                                                  caGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCAt         <  2:174099/134‑1 (MQ=255)
                                                                                                                  aaccATCTGCCAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCAt         <  2:174163/132‑1 (MQ=255)
                                                                                                                   aGCCTCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCAtt        >  1:666431/1‑135 (MQ=255)
                                                                                                                       tcggCTAAAGAATCTTATGGCTGGATTGTCATGGGACGTGTATGAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACtt    <  2:498870/132‑1 (MQ=255)
                                                                                                                         tGCTACAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTAACGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCCTTCTAGGATGGTCATTACTTGt  >  1:60856/1‑135 (MQ=255)
                                                                                                                                  |                                                                                                                             
TGCATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTA‑TTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGT  >  CP000730/478373‑478627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A