Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A21 F20 I0 R1	104	83.9	1834642	93.1%	1708051	141.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	478,502	C→A	100%	D342E (GAC→GAA)	ndhF →	NADH dehydrogenase (ubiquinone)

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	478,502	0	C	A	100.0%	301.3 / NA	97	D342E (GAC→GAA)	ndhF	NADH dehydrogenase (ubiquinone)
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (50/47); total (50/47)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TCAATGTGCATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGTATCTTGGAATC  >  CP000730/478367‑478638

tCAATGTGCATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTa                                                                                                                                     >  2:608383/1‑141 (MQ=255)

    tgtgCATGGGGTGGATCTTCAGCAGCGATTATTCATTTAATATTGCAGGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCTAAAACAAGCATCTGCTAAAGAAGCTTATGGc                                                                                                                                 <  2:291428/141‑1 (MQ=255)

       gCATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAAAAGCTAATGACTgg                                                                                                                              >  1:97254/1‑141 (MQ=255)

        cATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAGGAAGCTTATGGTTggt                                                                                                                             >  1:629644/1‑140 (MQ=255)

        cATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGa                                                                                                                             >  1:888591/1‑141 (MQ=255)

          ttGGGTGTATATTCAGCAGGGATTATTCATTTAATATTGCACGGTATTTTTAAAGCGACATTAATTTTACAATGAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAATCATCAGCGAAAGCAGCTTAGAGCTggtgt                                                                                                                           >  1:137829/1‑138 (MQ=255)

          ttGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGGTTCTATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGAtt                                                                                                                           >  1:518730/1‑141 (MQ=255)

          ttGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGAtt                                                                                                                           >  2:87472/1‑141 (MQ=255)

              gtgtATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAGGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCGGGGTTATCa                                                                                                                       >  1:371664/1‑141 (MQ=255)

              gtgtATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCa                                                                                                                       <  1:871537/141‑1 (MQ=255)

              gtgtATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCa                                                                                                                       <  1:107463/141‑1 (MQ=255)

              gtgtATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCa                                                                                                                       <  1:264037/141‑1 (MQ=255)

                 tataTTCGGCAGCGATTATTTATGTGATAGTTCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATgg                                                                                                                    <  2:916952/141‑1 (MQ=255)

                   tatTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGa                                                                                                                  >  2:464740/1‑141 (MQ=255)

                   tatTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGa                                                                                                                  >  2:76969/1‑141 (MQ=255)

                     ttCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACg                                                                                                                <  2:250712/141‑1 (MQ=255)

                       cagcagCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTCCAATCAGGTTCTATCGTGAAGCGATTCCAAAGCTCATAACAATCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACgtg                                                                                                              >  1:171494/1‑141 (MQ=255)

                        agcagtGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACgtgt                                                                                                             <  2:374883/141‑1 (MQ=255)

                         gcagcGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTa                                                                                                            <  2:554254/141‑1 (MQ=255)

                         gcagcGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTa                                                                                                            <  2:692625/141‑1 (MQ=255)

                         gcagcGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTa                                                                                                            <  2:667845/141‑1 (MQ=255)

                           agcGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTAtt                                                                                                          >  1:133391/1‑141 (MQ=255)

                             cGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGATTATAGCTGGATTGTAATGGGACGTGTATTAg                                                                                                        >  1:534662/1‑141 (MQ=255)

                              gATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGc                                                                                                       >  2:137698/1‑141 (MQ=255)

                              gATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGc                                                                                                       <  2:697491/141‑1 (MQ=255)

                              gATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTACTGGGACGTGTATTAGc                                                                                                       >  2:316501/1‑141 (MQ=255)

                              aattattCATTTTATATGGCACAGTATTTTTAAAGCAACATTTTTTTTACAATTCGGTTGTACCGTGAGGCGTTTAAATATTCCACAACAAGCATCTGCTAAAGAAGCGTATGGCTGGATTGTCATGGGACGTGTATTAGc                                                                                                       <  2:687920/140‑1 (MQ=255)

                                ttattCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCta                                                                                                     >  2:775725/1‑141 (MQ=255)

                                 tattCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCtat                                                                                                    >  2:843952/1‑141 (MQ=255)

                                    tCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCtattat                                                                                                 >  2:566855/1‑141 (MQ=255)

                                    tCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCtattat                                                                                                 >  2:566717/1‑141 (MQ=255)

                                     cattgtattttGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATc                                                                                                <  2:423099/132‑1 (MQ=255)

                                         tAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATAGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTAGGGCTGGATTGTCATGGGACGTGGATTAGCTATTATCGTgg                                                                                            >  1:759467/1‑141 (MQ=255)

                                             atTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAACCAAGCATCTGCTAAAGAAGCTTATGGCTGGGTTGTCATGGGACGTGTATTAGCTATTATCGTGGCAtt                                                                                        >  1:351288/1‑141 (MQ=255)

                                             atTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCCTGGGAGTGGTATTAGCTATGATCGTGGCAtt                                                                                        >  2:347760/1‑141 (MQ=255)

                                                gtaCGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCt                                                                                     >  2:154610/3‑141 (MQ=255)

                                                gaaCGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCt                                                                                     <  1:229951/139‑1 (MQ=255)

                                                gCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCt                                                                                     >  1:142659/1‑141 (MQ=255)

                                                gCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCt                                                                                     <  1:683281/141‑1 (MQ=255)

                                                      tATTTTTAAATCAACATTATTTTTACAAGCACGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCCTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTg                                                                               <  1:103629/141‑1 (MQ=255)

                                                      tATTTTTAAAGCAACAGTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTg                                                                               <  1:634017/141‑1 (MQ=255)

                                                       aTTTTTAAAGCAACATTATTTTTACAGTCAGGGTCTATTGTGAAGCGATTCGATATTCCAATACAAGCATCTGCTAAAGAAGCTTATGGCTGGTTTGTGATGGGACGTGTATTCGCTATTATCTTGGCATTTCTCTTTTgg                                                                              >  2:33325/1‑141 (MQ=255)

                                                       aTTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCCTTTCTATTTTgg                                                                              >  2:115844/1‑141 (MQ=255)

                                                       aTTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATACAATATTCCAAAACACGAATCTGCTAAAGAAGCTTATGGCTGGCTTGTCATGGGACGTGTATTGGCTATTATCGTGGCGTTTCTATTTTgg                                                                              >  2:265635/1‑141 (MQ=255)

                                                        tttttAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGCTTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACCTGTATTGTCTATTATAGTGGCATCACTAGTTTgcg                                                                             >  2:810650/1‑139 (MQ=255)

                                                        tttttAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGa                                                                             >  1:98099/1‑141 (MQ=255)

                                                          tttAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTATCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATg                                                                           <  2:583344/141‑1 (MQ=255)

                                                            tAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGag                                                                         <  1:566855/141‑1 (MQ=255)

                                                            tAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGag                                                                         <  1:566717/141‑1 (MQ=255)

                                                              aaGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGTCGTGTATTAGCTTTTATCGTGGCATTTCTATTTTGGATGagta                                                                       <  1:261416/141‑1 (MQ=255)

                                                                gCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGagtagt                                                                     <  1:678689/141‑1 (MQ=255)

                                                                  aatattattTTTACAATCAGGTTCTCTCCTGAAGCGATACAATATTCCAAAACAAGCATCTGCTAAAGTAGCTTTAGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGa                                                                   <  2:829641/138‑1 (MQ=255)

                                                                  aaCATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGa                                                                   <  1:608383/141‑1 (MQ=255)

                                                                  aaCATTATTTTTACAATCAGGTTCTATCGTGAAGACATTCAATATTCAAAAACCCATATCGTTCAAGGAACCTTATGTCTGGTGTGGCTTTTGACCTGTATTAGCGTGTTTCGTGGCATTTCTATTTTGGATGAGTAGTGa                                                                   <  2:666999/141‑1 (MQ=255)

                                                                       tattTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGaa                                                              >  1:828993/1‑141 (MQ=255)

                                                                         tttttACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAga                                                            >  2:818504/1‑140 (MQ=255)

                                                                              aCAATCATGTTGTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCata                                                       <  2:452025/141‑1 (MQ=255)

                                                                                caTCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATg                                                     <  1:185125/140‑1 (MQ=255)

                                                                                aaTCAGGGTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTGATGGCTGGATTGTCAGGGGACGTGGATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATg                                                     <  1:448754/141‑1 (MQ=255)

                                                                                       ttCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGtt                                              >  1:525061/1‑141 (MQ=255)

                                                                                           aTCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGt                                          >  1:164043/1‑141 (MQ=255)

                                                                                           aTCGTGAAGCGATACAATATTCCAAAAAAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGt                                          >  2:602420/1‑141 (MQ=255)

                                                                                            tCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAATGCAGTTGAAGGGTTAAGTg                                         >  2:589877/1‑141 (MQ=255)

                                                                                              gTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCa                                       >  2:764844/1‑141 (MQ=255)

                                                                                               ttaaGCGATTCAATTTTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGTATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCAc                                      <  2:685026/139‑1 (MQ=255)

                                                                                                gAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACt                                     >  1:196288/1‑141 (MQ=255)

                                                                                                   gCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCAt                                  <  1:264452/141‑1 (MQ=255)

                                                                                                   gCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCAt                                  <  1:775725/141‑1 (MQ=255)

                                                                                                   gCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCAt                                  <  1:154610/141‑1 (MQ=255)

                                                                                                   gCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCGGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGAGGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCAt                                  <  2:777074/141‑1 (MQ=255)

                                                                                                    cGATTTAATATTCCAAAACGAGCATATGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCAtt                                 <  2:137829/141‑1 (MQ=255)

                                                                                                     gATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGAATATGAAGTGTTAAGTGCACTCATTc                                >  1:557678/1‑141 (MQ=255)

                                                                                                       ttCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTa                              >  1:807208/1‑141 (MQ=255)

                                                                                                            tatTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATg                         <  2:719216/141‑1 (MQ=255)

                                                                                                             atTCCAAAACAAGTATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATgg                        <  2:344314/141‑1 (MQ=255)

                                                                                                              ttCCAAATCAAGCATCTGCGTAAGAAGCTTATGGCTGTATTGTCATAGTACGTGTACTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGACGTGCATATTAAGTGTTAAGTGCACTCATTCTAGGATGGt                       <  2:371664/141‑1 (MQ=255)

                                                                                                              tgcctgaaCAAGCAGCTGCTAAAGAAGCTTATAGCTGGATTGTAGTGGGACGTGTATGAGCTATTATCGTGGCATTTCTATTTTGGATGAGTCGTGACAGAAGTGCATATGAAGTGTGAACGGCACTCATGGTAGGTTGGt                       >  2:199083/7‑141 (MQ=255)

                                                                                                               tCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCGTTCTAGGGTGGTc                      >  2:740936/1‑141 (MQ=255)

                                                                                                               tCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTc                      <  1:327814/141‑1 (MQ=255)

                                                                                                                ccAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCa                     >  1:370173/1‑141 (MQ=255)

                                                                                                                 cAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGAGGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGACAt                    >  2:703243/1‑141 (MQ=255)

                                                                                                                  aaaaCAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCAtt                   <  1:813220/141‑1 (MQ=255)

                                                                                                                    aacaaacaACAGATAAAAAAGCTAAAGGCTGGATTGTCAAGGGACGAGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTAc                 <  1:72684/141‑1 (MQ=255)

                                                                                                                     aCAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACt                >  1:30604/1‑141 (MQ=255)

                                                                                                                     aCAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACt                >  1:609418/1‑141 (MQ=255)

                                                                                                                       caGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTg              <  2:447593/140‑1 (MQ=255)

                                                                                                                        aGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATCGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGACGTGTTAAGTGCACTCATTCTATGATGGTCATTACTTGt             <  1:505662/141‑1 (MQ=255)

                                                                                                                        aGCATCTGCTAAACAAGCTTATGGCTGGAGTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTATCGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGt             <  2:715872/141‑1 (MQ=255)

                                                                                                                         gCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGtt            >  1:647348/1‑140 (MQ=255)

                                                                                                                         gCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGTa            >  1:153685/1‑141 (MQ=255)

                                                                                                                          cATCTGCTAAAGAAGCTTAGGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGGGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGTAt           <  1:464740/141‑1 (MQ=255)

                                                                                                                           aTCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGCTGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTATTTGTATc          >  2:890406/1‑141 (MQ=255)

                                                                                                                            tccgCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGTATCt         <  1:441120/138‑1 (MQ=255)

                                                                                                                            tCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACATAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGTATCt         <  2:72706/141‑1 (MQ=255)

                                                                                                                             cTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGTATCtt        >  1:792504/1‑141 (MQ=255)

                                                                                                                             cTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGTATCtt        >  1:875860/1‑141 (MQ=255)

                                                                                                                                gtAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGTATCTTGGa     <  1:843800/140‑1 (MQ=255)

                                                                                                                                   aagaagCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGTATCTTGGAATc  >  2:178126/1‑141 (MQ=255)

TCAATGTGCATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGTATCTTGGAATC  >  CP000730/478367‑478638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A