Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F1 I1 R1
|
15 |
35.6 |
2322208 |
94.1% |
2185197 |
75.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
4,524,522 |
IS186 (+) +6 bp |
coding (494‑499/549 nt) |
fimA → |
major type 1 subunit fimbrin (pilin) |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
2772854 = | NA (NA) | 41 (1.200) |
33/144 |
0.1 |
100% |
noncoding (1/1343 nt) |
IS186 |
repeat region |
| ? | REL606 |
= 4524527 |
0 (0.000) | coding (499/549 nt) |
fimA |
major type 1 subunit fimbrin (pilin) |
| * |
? |
REL606 |
= 2774196 | NA (NA) | 28 (0.820) |
24/144 |
0.5 |
96.2% |
noncoding (1343/1343 nt) |
IS186 |
repeat region |
| ? | REL606 |
4524522 = |
1 (0.030) | coding (494/549 nt) |
fimA |
major type 1 subunit fimbrin (pilin) |
GTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2772931‑2772854
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTCTG < REL606/4524527‑4524456
GTTATCGTGAGAATAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATG > 2:183001/1‑76
GTTATCGTAAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTCAGACCACAACCCTTATGTTAGCGCTTATG > 2:1030632/1‑76
TTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGG > 2:1145951/1‑76
TATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCATAATACCACAACCCNTAAGTTAGCGCTTATGGG > 1:898814/1‑76
ATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTGAAGTTAGCGCTTATGGGT > 1:879572/1‑76
TCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTT > 1:755389/1‑76
GTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCC < 1:59682/76‑1
TAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCG > 2:620711/1‑76
TAATTAATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCTTTAAGTTAGCGCTTATGGGTTGCGGCCCCG > 2:155884/1‑76
TCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTG > 2:423173/1‑76
TCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTG < 2:916152/76‑1
TCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCGTATGGGTTGCGGCCCCGGTTG < 2:157610/76‑1
CATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGC < 1:586193/76‑1
CGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAta < 1:836663/76‑3
CACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAAAATA > 1:656091/1‑76
CGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCTGCCCCGGTTGCAAAATAAC < 1:67987/76‑1
CGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCAGATGGGTTGCGGCCCCGGTTGCAAAATAAC < 1:1133637/76‑1
GTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACG < 2:580722/76‑1
TAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACGCG > 1:714886/1‑76
AAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTCGCAAAATAACGCGC > 2:150331/1‑76
TCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTG < 1:785893/76‑1
CATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGG > 1:842750/1‑76
CATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGG < 2:714886/76‑1
ATATCAGGGGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGA < 1:153708/76‑1
TATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAA > 2:360976/1‑76
ATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACGCGACTGGAAC < 1:765190/76‑1
GCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAACGGAAT < 1:351377/76‑1
AATACCACAGCCCTTAAGTTAGCGCTGATGGGTTGCGACCCCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTA < 1:809195/76‑1
AATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTA < 1:57511/76‑1
AATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCGACCCCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTA < 1:809211/76‑1
ACCACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAAAATAAAGCGACTGGAACGGAATGGTATTG > 1:121762/1‑76
ACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTATTGGTTCCG < 2:536362/76‑1
nTTAGGTTAGCGCTTATGGGTNGCGGCCNCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTATTGGTTCCGTTA < 1:965635/75‑1
TTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTATTGGTTCCGTTAT < 1:732140/76‑1
AAGTTAGCGTTTATGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTATTGGTTCCGTTATTC > 2:680161/1‑76
AAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTATTGGTTCCGTTATTC > 2:584821/1‑76
TAGCGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTATTGGTTCCGTTATTCAGGG > 1:45839/1‑76
TAGCGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTATTGGTTCCGTTATTCAGGG < 1:349564/76‑1
AGCGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACACGCCTGGAACGGAATGGTATTGGTTCCGTTATTCAGGGT > 2:828953/1‑76
GCGCTTATGGGTTGCGGCCCCGGTTGCAATATAACGCGCCTGGAACAGAATGGTATTGGTTCCGTTATTCAGGGTT > 2:721579/1‑76
GCTTATGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTATTGGTTCCGTTATTCAGGGTTGT > 1:307088/1‑76
CTTATGGGTTGCGGCCCCCGTTGCAAAATAACGCGCCTGGAACGGAATGGTATTGGTTCCGTTATTCAGGGTTGTT < 1:241552/76‑1
TATGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTC > 1:565242/1‑76
TGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTCTG > 2:579668/1‑76
TGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTCTG > 2:916215/1‑76
GTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2772931‑2772854
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTCTG < REL606/4524527‑4524456
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
