Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F999 I0 R1
|
92 |
59.4 |
4455785 |
96.3% |
4290920 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,948,805 |
(G)6→7 |
coding (1165/1521 nt) |
yifB ← |
putative magnesium chelatase YifB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,948,799 | 1 | . | G | 100.0%
| 186.9
/ NA
| 47 | G391R (GGC→CGC) | yifB | putative magnesium chelatase YifB |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (15/32); total (15/32) |
TAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCGA > NC_000913/3948751‑3948843
|
tAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGcc < 1:1694767/49‑1 (MQ=255)
aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑gg > 1:4198165/1‑50 (MQ=255)
aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑gg > 1:1377002/1‑50 (MQ=255)
ggTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑ggggg > 1:2599487/1‑50 (MQ=255)
ggTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑ggggg > 1:1653137/1‑50 (MQ=255)
tGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑ggggggg > 1:1053008/1‑49 (MQ=255)
ggCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑gggggggt > 1:2857633/1‑48 (MQ=255)
ctgctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTa < 1:3553783/50‑1 (MQ=255)
tgctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTaa > 1:4165456/1‑50 (MQ=255)
gctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAAt > 1:1710545/1‑50 (MQ=255)
ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAAt < 1:2007030/49‑1 (MQ=255)
ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATg < 1:1267980/50‑1 (MQ=255)
ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATg < 1:1098517/50‑1 (MQ=255)
tctcCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATgg < 1:4023437/48‑1 (MQ=255)
ctcCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGa < 1:267059/49‑1 (MQ=255)
ctcCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGa < 1:1201792/49‑1 (MQ=255)
ctcCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAt > 1:1703698/1‑50 (MQ=255)
ctcCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAt > 1:2555671/1‑50 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAtctc < 1:4380456/50‑1 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAtctc < 1:2361491/50‑1 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAtc < 1:3288433/48‑1 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAtc < 1:1232498/48‑1 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAtc < 1:2174758/48‑1 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAt < 1:1370526/47‑1 (MQ=255)
gCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAg > 1:2748912/1‑50 (MQ=255)
gCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAg > 1:4246925/1‑50 (MQ=255)
gCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAg > 1:905066/1‑50 (MQ=255)
aCTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTg < 1:2446382/50‑1 (MQ=255)
cTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTga < 1:3516779/50‑1 (MQ=255)
cTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTga < 1:1155103/50‑1 (MQ=255)
ccGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTgaga < 1:3787627/49‑1 (MQ=255)
ccGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTgaga < 1:1285429/49‑1 (MQ=255)
ccGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTgag < 1:2985819/48‑1 (MQ=255)
ccGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTgag < 1:4365938/48‑1 (MQ=255)
cGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTgagaga < 1:3150801/50‑1 (MQ=255)
cGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTgagaga < 1:104862/50‑1 (MQ=255)
cGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTga > 1:1947707/1‑46 (MQ=255)
gTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGAt < 1:1490667/50‑1 (MQ=255)
ttttACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATc < 1:2273938/50‑1 (MQ=255)
tttACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATc > 1:690290/1‑49 (MQ=255)
tttACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATc > 1:2714170/1‑49 (MQ=255)
ttACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCg > 1:3624358/1‑49 (MQ=255)
tACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCg > 1:4204319/1‑48 (MQ=255)
tACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGa < 1:3351700/49‑1 (MQ=255)
aCTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGaa < 1:4108043/49‑1 (MQ=255)
aCTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGaa < 1:4208353/49‑1 (MQ=255)
cTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGc < 1:1710322/50‑1 (MQ=255)
aaaaTGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCg < 1:466105/48‑1 (MQ=255)
aaaaTGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCg < 1:265357/48‑1 (MQ=255)
aaaaTGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCg < 1:1306751/48‑1 (MQ=255)
aaaaTGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt > 1:1868302/1‑50 (MQ=255)
aaTGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:1958047/1‑49 (MQ=255)
aTGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:1343298/1‑48 (MQ=255)
aTGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCga < 1:341989/50‑1 (MQ=255)
|
TAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCGA > NC_000913/3948751‑3948843
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
