Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F999 I0 R1
|
111 |
30.9 |
2867207 |
97.9% |
2806995 |
48.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,948,805 |
(G)6→7 |
coding (1165/1521 nt) |
yifB ← |
putative magnesium chelatase YifB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,948,799 | 1 | . | G | 100.0%
| 186.8
/ NA
| 48 | G391R (GGC→CGC) | yifB | putative magnesium chelatase YifB |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (22/26); total (22/26) |
TAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTC > NC_000913/3948751‑3948841
|
tAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGcc > 1:31738/1‑49 (MQ=255)
aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGcc < 1:1148185/48‑1 (MQ=255)
aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑g > 1:1340689/1‑49 (MQ=255)
aCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑g < 1:2262901/48‑1 (MQ=255)
aCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑g < 1:1754747/48‑1 (MQ=255)
tGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑gggggg > 1:994219/1‑49 (MQ=255)
gcgcTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑gggggggt < 1:1099794/49‑3 (MQ=255)
gcgcTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑gggggggt < 1:2420384/49‑3 (MQ=255)
gcgcTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑gggggggt > 1:2275689/1‑47 (MQ=255)
ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTaa < 1:2768849/48‑1 (MQ=255)
ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTa < 1:546131/47‑1 (MQ=255)
ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAAt > 1:1450919/1‑49 (MQ=255)
ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAAt < 1:1732033/49‑1 (MQ=255)
tttCTCCCGGCACTACCGTTTTACTCAAATTGCCGGGGGGGTGGTAATg > 1:30101/1‑49 (MQ=38)
ttCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATgg > 1:2276681/1‑49 (MQ=255)
tctcCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATgg > 1:1554054/1‑48 (MQ=255)
tctcCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATg < 1:2447237/47‑1 (MQ=255)
ctcCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATggg < 1:2299496/48‑1 (MQ=255)
tcCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAt > 1:2652210/1‑49 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGa < 1:1476929/46‑1 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAtct < 1:1743555/49‑1 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAtc < 1:2457771/48‑1 (MQ=255)
cGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAtctc < 1:1495691/49‑1 (MQ=255)
ggCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAtctc > 1:57092/1‑48 (MQ=255)
ggCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAtctc > 1:1981181/1‑48 (MQ=255)
gCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAtctc > 1:2101514/1‑47 (MQ=255)
gCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCa < 1:2670209/49‑1 (MQ=255)
cACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAg > 1:495251/1‑49 (MQ=255)
aCTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGt > 1:2436546/1‑49 (MQ=255)
cTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAAGGGGAtctcaa > 1:1157824/1‑44 (MQ=255)
tACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGt > 1:566749/1‑47 (MQ=255)
tACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGt > 1:1737802/1‑47 (MQ=255)
aCCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGt > 1:262415/1‑46 (MQ=255)
ccGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTga > 1:107981/1‑47 (MQ=255)
ccGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTga < 1:763007/47‑1 (MQ=255)
cGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTga > 1:2099595/1‑46 (MQ=255)
gTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTgagaga < 1:435436/49‑1 (MQ=255)
gTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTgagaga < 1:532219/49‑1 (MQ=255)
gTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTga > 1:1759958/1‑45 (MQ=255)
ttttACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTga > 1:993118/1‑44 (MQ=255)
ttttACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGAt < 1:2217151/49‑1 (MQ=255)
ttACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATc < 1:1795621/48‑1 (MQ=255)
ttACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATc < 1:1516026/48‑1 (MQ=255)
ttACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATc < 1:378390/48‑1 (MQ=255)
tACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCg < 1:588310/48‑1 (MQ=255)
aCTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGa < 1:1598826/48‑1 (MQ=255)
cTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGaa < 1:1377647/48‑1 (MQ=255)
cTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGaa < 1:1872399/48‑1 (MQ=255)
cTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAg < 1:460937/49‑1 (MQ=255)
cTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAg > 1:2777541/1‑49 (MQ=255)
tCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGc > 1:1720017/1‑49 (MQ=255)
aaaaTGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGc < 1:2029206/47‑1 (MQ=255)
aaaaTGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCgg > 1:1800970/1‑49 (MQ=255)
aaaaTGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCg < 1:1709475/48‑1 (MQ=255)
aaaTGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt > 1:984135/1‑49 (MQ=255)
aaaTGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt < 1:1727562/49‑1 (MQ=255)
aaTGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc < 1:2733570/49‑1 (MQ=255)
|
TAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTC > NC_000913/3948751‑3948841
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
