Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F999 I0 R1
|
97 |
117.0 |
8624996 |
98.0% |
8452496 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,948,805 |
(G)6→7 |
coding (1165/1521 nt) |
yifB ← |
putative magnesium chelatase YifB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,948,799 | 1 | . | G | 100.0%
| 296.5
/ NA
| 74 | G391R (GGC→CGC) | yifB | putative magnesium chelatase YifB |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (36/38); total (36/38) |
TTAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTC > NC_000913/3948750‑3948841
|
ttAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGcc > 1:5964144/1‑50 (MQ=255)
ttAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGcc > 1:16202/1‑50 (MQ=255)
aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑gg > 1:3877202/1‑50 (MQ=255)
ggTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑ggggg < 1:3992517/50‑1 (MQ=255)
ggTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑ggggg > 1:4290702/1‑50 (MQ=255)
ggTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑ggggg < 1:5152756/50‑1 (MQ=255)
gTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑gggggg < 1:5982760/50‑1 (MQ=255)
gTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑gggggg > 1:8015765/1‑50 (MQ=255)
tGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑ggggggg > 1:8585802/1‑49 (MQ=255)
ggCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑gggggggt > 1:3435918/1‑48 (MQ=255)
ggCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑gggggggt > 1:6738550/1‑48 (MQ=255)
gcgcTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑gggggggt < 1:2931919/49‑3 (MQ=255)
gcgcTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑gggggggt < 1:1614181/49‑3 (MQ=255)
tgctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTaa > 1:7107944/1‑50 (MQ=255)
ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAAt < 1:8541753/49‑1 (MQ=255)
ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAAt < 1:859708/49‑1 (MQ=255)
ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAAt < 1:4639575/49‑1 (MQ=255)
ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATg > 1:6048649/1‑50 (MQ=255)
ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATg < 1:101790/50‑1 (MQ=255)
tttCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATgg > 1:3172395/1‑50 (MQ=255)
tttCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATgg > 1:1294295/1‑50 (MQ=255)
tttCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATgg > 1:5095480/1‑50 (MQ=255)
ttCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATgg > 1:1234570/1‑49 (MQ=255)
ttCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATgg > 1:1229285/1‑49 (MQ=255)
tctcCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATggg < 1:994709/49‑1 (MQ=255)
tctcCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATggg < 1:4522257/49‑1 (MQ=255)
ctcCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGa < 1:2301959/49‑1 (MQ=255)
ctcCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGa < 1:6346203/49‑1 (MQ=255)
ctcCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAt > 1:4359306/1‑50 (MQ=255)
tcCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAtc > 1:7243423/1‑50 (MQ=255)
tcCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAtc > 1:4892040/1‑50 (MQ=255)
tcCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAtc > 1:5982092/1‑50 (MQ=255)
cccGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAtct > 1:4306731/1‑50 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAtct < 1:4360654/49‑1 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAtc < 1:7766533/48‑1 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAt < 1:921557/47‑1 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAt < 1:3577456/47‑1 (MQ=255)
cGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAtctc > 1:794734/1‑49 (MQ=255)
cGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAtctc > 1:4937682/1‑49 (MQ=255)
ggCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAtctc > 1:2228668/1‑48 (MQ=255)
ggCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAtctc > 1:6615973/1‑48 (MQ=255)
ggCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAtctc > 1:252541/1‑48 (MQ=255)
ggCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAtctc > 1:5641572/1‑48 (MQ=255)
ggCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCa < 1:6360411/50‑1 (MQ=255)
gCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAg > 1:7429399/1‑50 (MQ=255)
gCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAg < 1:4136679/50‑1 (MQ=255)
cACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt < 1:4500398/50‑1 (MQ=255)
cACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt < 1:824900/50‑1 (MQ=255)
cACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt < 1:7132181/50‑1 (MQ=255)
aCTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt > 1:4747956/1‑49 (MQ=255)
aCTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTg < 1:3364150/50‑1 (MQ=255)
cTACCGTTTTACTCAAAATGCCGGGGGGGGTGGTAATGGGATCTCCAGt > 1:3822730/1‑49 (MQ=255)
cTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt > 1:2566825/1‑48 (MQ=255)
cTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTga < 1:634424/50‑1 (MQ=255)
cTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTga < 1:771810/50‑1 (MQ=255)
aCCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTga > 1:386147/1‑48 (MQ=255)
ccGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTgagag < 1:5979978/50‑1 (MQ=255)
ccGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTgaga < 1:6409172/49‑1 (MQ=255)
ccGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTgag < 1:4450402/48‑1 (MQ=255)
cGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTgagaga < 1:4642088/50‑1 (MQ=255)
cGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTga > 1:7274098/1‑46 (MQ=255)
cGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTga > 1:8053052/1‑46 (MQ=255)
gTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGAt < 1:2576145/50‑1 (MQ=255)
ttttACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATc < 1:6547412/50‑1 (MQ=255)
ttttACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATc < 1:7340131/50‑1 (MQ=255)
ttttACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATc < 1:3459758/50‑1 (MQ=255)
tttACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATc > 1:5555743/1‑49 (MQ=255)
ttACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCg < 1:7745744/49‑1 (MQ=255)
ttACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCg < 1:7647864/49‑1 (MQ=255)
tACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCg > 1:3669463/1‑48 (MQ=255)
tACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCg > 1:8374863/1‑48 (MQ=255)
tACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCg > 1:4174372/1‑48 (MQ=255)
tACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCg > 1:6845676/1‑48 (MQ=255)
tACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCg > 1:4559427/1‑48 (MQ=255)
tACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGa < 1:6238251/49‑1 (MQ=255)
cTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAg < 1:3303744/49‑1 (MQ=255)
cTCAAAATGCCG‑GGGGGGTGGTAACGGGATCTCCAGTGAGAGATCGAAGc > 1:6963267/1‑50 (MQ=255)
cAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCgg > 1:4177578/1‑50 (MQ=255)
aaaaTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt < 1:7247235/50‑1 (MQ=255)
aaaaTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt < 1:1372256/50‑1 (MQ=255)
aaaaTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt < 1:3806240/50‑1 (MQ=255)
aaaaTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt < 1:8151093/50‑1 (MQ=255)
aaaTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc < 1:645861/50‑1 (MQ=255)
aaaTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc < 1:7388909/50‑1 (MQ=255)
aaTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:6808371/1‑49 (MQ=255)
aaTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:1020195/1‑49 (MQ=255)
aTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:7000157/1‑48 (MQ=255)
|
TTAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTC > NC_000913/3948750‑3948841
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
