Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A19 F999 I0 R1
|
91 |
166.1 |
11695708 |
96.8% |
11321445 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,948,805 |
(G)6→7 |
coding (1165/1521 nt) |
yifB ← |
putative magnesium chelatase YifB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,948,799 | 1 | . | G | 91.6%
| 478.5
/ 36.9
| 131 | coding (1171/1521 nt) | yifB | putative magnesium chelatase YifB |
| Reads supporting (aligned to +/- strand): ref base . (4/7); new base G (42/78); total (46/85) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 152 total aligned reads displayed.
TTAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCGAGAAAG > NC_000913/3948750‑3948848
|
tAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑cc < 1:2034900/49‑1 (MQ=255)
aCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑ggg > 1:1202510/1‑50 (MQ=255)
aCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑ggg < 2:887503/50‑1 (MQ=255)
aCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑gg < 2:328323/49‑1 (MQ=255)
ggTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑ggggg < 2:2916858/50‑1 (MQ=255)
gTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑gggggg < 2:1382656/50‑1 (MQ=255)
gTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑gggggg < 1:4987313/50‑1 (MQ=255)
gcgcTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑gggggggt < 2:1963824/49‑3 (MQ=255)
ctgctTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTa < 1:4111689/50‑1 (MQ=255)
tgctTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTaa > 2:2373627/1‑50 (MQ=255)
tgctTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑GGGGGGTGGTAAt > 1:2991994/1‑50 (MQ=255)
gctTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAAt > 1:5314331/1‑50 (MQ=255)
ctTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTaa < 2:4112627/48‑1 (MQ=255)
ctTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTaa < 1:4272547/48‑1 (MQ=255)
ctTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAAt < 1:1879964/49‑1 (MQ=255)
ctTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATg > 2:3167632/1‑50 (MQ=255)
ctTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑GGGGGGTGGTAATgg > 1:4788142/1‑50 (MQ=255)
ctTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑GGGGGGTGGTAATg < 1:5829637/49‑1 (MQ=255)
tttCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATgg > 1:3909202/1‑50 (MQ=255)
ttCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATggg > 1:4833716/1‑50 (MQ=255)
ttCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATgg > 1:5111363/1‑49 (MQ=255)
ttCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATgg > 1:1084003/1‑49 (MQ=255)
tctcCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATgg < 2:4661952/48‑1 (MQ=255)
ctcCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGa < 2:2891380/49‑1 (MQ=255)
ctcCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGa < 1:1526095/49‑1 (MQ=255)
tcCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGAtc > 1:5504343/1‑50 (MQ=255)
cccGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGAtct > 2:4044937/1‑50 (MQ=255)
cccGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGAtct > 2:4984061/1‑50 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGAtctc < 1:3493536/50‑1 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGAtctc > 1:1590278/1‑50 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGAtctc > 2:2416101/1‑50 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGAtctc < 2:423618/50‑1 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGAtct < 2:3491455/49‑1 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGAtct < 2:4019688/49‑1 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGAt < 1:2079391/47‑1 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATG‑CC‑GGGGGGTGGTAATGGGAtctc < 1:5666182/49‑1 (MQ=255)
cGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGAtctc > 1:5039951/1‑49 (MQ=255)
cGGCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTcc < 2:268170/50‑1 (MQ=255)
cGGCACTACCGTTTTACTCAAAATG‑CC‑GGGGGGTGGTAATGGGAtctc > 1:1420900/1‑48 (MQ=255)
gCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAg < 1:5371777/50‑1 (MQ=255)
gCACTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAg > 1:4309059/1‑50 (MQ=255)
aCTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGt > 1:2582083/1‑49 (MQ=255)
aCTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGt > 1:1282111/1‑49 (MQ=255)
aCTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTg < 2:1462891/50‑1 (MQ=255)
aCTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTg < 2:618065/50‑1 (MQ=255)
cTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGt > 2:2488227/1‑48 (MQ=255)
cTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGt > 2:5327389/1‑48 (MQ=255)
cTACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGt > 1:5588941/1‑48 (MQ=255)
tACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGt > 1:5677298/1‑47 (MQ=255)
tACCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGt > 1:2301982/1‑47 (MQ=255)
aCCGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTga > 2:2128454/1‑48 (MQ=255)
ccGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTgaga < 1:2980275/49‑1 (MQ=255)
ccGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTgag < 1:853796/48‑1 (MQ=255)
ccGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTgag < 1:445142/48‑1 (MQ=255)
ccGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGACCTCCAGTgaga < 1:4155586/49‑1 (MQ=255)
cGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTgagaga < 2:4853860/50‑1 (MQ=255)
cGTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTga > 1:2311792/1‑46 (MQ=255)
gTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTga > 1:934457/1‑45 (MQ=255)
gTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGAt < 2:1737025/50‑1 (MQ=255)
gTTTTACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGAt < 2:1823747/50‑1 (MQ=255)
gTTTTACTCAAAATG‑CC‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATc < 2:4833312/50‑1 (MQ=255)
ttttACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATc < 1:5411702/50‑1 (MQ=255)
ttttACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATc < 2:1565040/50‑1 (MQ=255)
ttttACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATc < 2:3185580/50‑1 (MQ=255)
ttttACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATc < 2:2915563/50‑1 (MQ=255)
ttttACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATc < 2:2743143/50‑1 (MQ=255)
ttttACTCAAAATG‑CCGGGGGGGGGGTAATGGGATCTCCAGTga > 2:2359685/1‑44 (MQ=37)
ttACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCg < 1:1776766/49‑1 (MQ=255)
tACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGa < 1:1402052/49‑1 (MQ=255)
tACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGa < 1:2683031/49‑1 (MQ=255)
tACTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGa < 1:5201580/49‑1 (MQ=255)
tACTCAAAATG‑CC‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGaa < 2:3917599/49‑1 (MQ=255)
aCTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGaa < 2:152411/49‑1 (MQ=255)
aCTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGaa < 1:4103801/49‑1 (MQ=255)
aCTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAg > 2:5280643/1‑50 (MQ=255)
cTCAAAATGCCC‑AGGGGGTGGTAATAGGATATCCAGTGAGAAATCGAAg < 2:5207736/49‑1 (MQ=19)
cTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAg < 2:1018941/49‑1 (MQ=255)
cTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGc < 2:2205340/50‑1 (MQ=255)
cTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGc < 2:54329/50‑1 (MQ=255)
cTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGc < 1:3323/50‑1 (MQ=255)
cTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGc > 2:3957857/1‑50 (MQ=255)
cTCAAAATG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGc < 1:4903743/50‑1 (MQ=255)
cAAAATG‑CC‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt > 1:1267678/1‑50 (MQ=255)
aaaaTG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCgg < 2:4123719/49‑1 (MQ=255)
aaaaTG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCgg < 1:3718033/49‑1 (MQ=255)
aaaaTG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCgg < 2:2796824/49‑1 (MQ=255)
aaaaTG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCg < 1:4540034/48‑1 (MQ=255)
aaaaTG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCg < 2:3662800/48‑1 (MQ=255)
aaaaTG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCg < 2:5260244/48‑1 (MQ=255)
aaaaTG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt < 2:425614/50‑1 (MQ=255)
aaaaTG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt < 2:351709/50‑1 (MQ=255)
aaaaTG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt < 1:1814533/50‑1 (MQ=255)
aaaaTG‑CC‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt < 1:548547/49‑1 (MQ=255)
aaaTG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc < 2:354571/50‑1 (MQ=255)
aaaTG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:78296/1‑50 (MQ=255)
aaaTG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc < 2:198857/50‑1 (MQ=255)
aaTG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:1748068/1‑49 (MQ=255)
aaTG‑CCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCg < 2:4644228/50‑1 (MQ=255)
cc‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCGAGaaa < 2:5148015/50‑1 (MQ=255)
c‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCGAGAAAg < 2:1148016/50‑1 (MQ=255)
|
TTAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCGAGAAAG > NC_000913/3948750‑3948848
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
