Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A17 F999 I0 R1
|
42 |
139.8 |
10793925 |
96.0% |
10362168 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,948,805 |
(G)6→7 |
coding (1165/1521 nt) |
yifB ← |
putative magnesium chelatase YifB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,948,799 | 1 | . | G | 77.7%
| 306.1
/ 94.2
| 103 | coding (1171/1521 nt) | yifB | putative magnesium chelatase YifB |
| Reads supporting (aligned to +/- strand): ref base . (11/12); new base G (35/45); total (46/57) |
| Fisher's exact test for biased strand distribution p-value = 8.14e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 |
Only 100 of 123 total aligned reads displayed.
TTAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑GGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCGAGA > NC_000913/3948750‑3948845
|
ttAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGcc > 2:1769645/1‑50 (MQ=255)
aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑gg > 1:417148/1‑50 (MQ=255)
aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑gg > 1:4098456/1‑50 (MQ=255)
aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑gg > 2:3727751/1‑50 (MQ=255)
aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑g < 2:917064/49‑1 (MQ=255)
aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑g < 2:2949050/49‑1 (MQ=255)
aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑g < 1:2564947/49‑1 (MQ=255)
aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑g < 2:711089/49‑1 (MQ=255)
aCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑ggg > 2:1571561/1‑50 (MQ=255)
aCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑ggg < 1:2309638/50‑1 (MQ=255)
ggTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑ggggg > 1:565295/1‑50 (MQ=255)
ggTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑ggggg < 2:2668610/50‑1 (MQ=255)
ggTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑ggggg > 1:1383940/1‑50 (MQ=255)
gTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑gggggg < 2:3802956/50‑1 (MQ=255)
tGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑ggggggg > 1:3389414/1‑49 (MQ=255)
tGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑GGGGgg‑t > 2:2771731/1‑50 (MQ=255)
tGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑GGGGgg‑t > 1:2870104/1‑50 (MQ=255)
gcgcTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑gggggggt < 2:4149929/49‑3 (MQ=255)
gcgcTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑GGGGgg‑tg < 2:5153927/49‑1 (MQ=255)
gcgcTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑GGGGgg‑tg < 1:4393914/49‑1 (MQ=255)
gcgcTGCTTTCGCCCGGCGCTACCGTTTTACTCAAAATGCC‑gggggggt < 1:4336489/49‑3 (MQ=38)
gctgctTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑GGGGGG‑TGGTa < 1:5206296/50‑1 (MQ=255)
ctgctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTa < 1:4226434/50‑1 (MQ=255)
ctgctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTa < 1:5024242/50‑1 (MQ=255)
ctgctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTa < 1:2217769/50‑1 (MQ=255)
tgctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTaa > 1:1108662/1‑50 (MQ=255)
cgctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTaa > 2:1383507/2‑50 (MQ=255)
gctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAAt > 1:3441474/1‑50 (MQ=255)
gctTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑GGGGGG‑TGGTAATg > 2:5386025/1‑50 (MQ=255)
ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAAt < 1:1702871/49‑1 (MQ=255)
ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑GGGGGG‑TGGTAATgg > 1:3351553/1‑50 (MQ=255)
tttCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATgg > 1:241279/1‑50 (MQ=255)
tttCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATgg > 1:3936186/1‑50 (MQ=255)
tttCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATgg > 2:3476269/1‑50 (MQ=255)
tttCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATgg > 2:205561/1‑50 (MQ=255)
tctcCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATggg < 1:4567673/49‑1 (MQ=255)
tctcCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGa > 2:2092583/1‑50 (MQ=255)
tctcCCGGCACTACCGTTTTACTCAAAATGCC‑GGGGGGTTGGTAATggg < 2:4469892/49‑1 (MQ=255)
ctcCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGa < 1:2918146/49‑1 (MQ=255)
ctcCCGGCACTACCGTTTTACTCAAAATGCC‑GGGGGG‑TGGTAATGGGAt < 1:1207155/49‑1 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGAtctc < 2:3336378/50‑1 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGAtctc < 1:156728/50‑1 (MQ=255)
ccGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGAtc < 1:2323700/48‑1 (MQ=255)
cGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTcc < 2:1681675/50‑1 (MQ=255)
cGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTcc < 2:4470498/50‑1 (MQ=255)
ggCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCa < 2:2535263/50‑1 (MQ=255)
ggCACTACCGTTTTACTCAAAATGCC‑GGGGGG‑TGGTAATGGGATCTCCAg < 2:3647970/50‑1 (MQ=255)
ggCACTACCG‑TTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAg > 1:1246702/1‑50 (MQ=255)
gCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAg < 2:2698719/50‑1 (MQ=255)
gCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAg < 2:4464605/50‑1 (MQ=255)
gCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAg > 2:718748/1‑50 (MQ=255)
gCACTACCGTTTTACTCAAAATGCC‑GGGGGG‑TGGTAATGGGATCTCCAGt < 2:4468009/50‑1 (MQ=255)
cACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGt < 2:3523927/50‑1 (MQ=255)
cACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGt < 1:4811584/50‑1 (MQ=255)
cACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGt > 2:431683/1‑50 (MQ=255)
cACTACCGTTTTACTCAAAATGCC‑GGGGGG‑TGGTAATGGGATCTCCAGt > 2:1100497/1‑49 (MQ=255)
cACTACCGTTTTACTCAAAATGCC‑GGGGGG‑TGGTAATGGGATCTCCAGt > 1:3854965/1‑49 (MQ=255)
aCTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTg < 1:1293085/50‑1 (MQ=255)
cTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGt > 2:5011525/1‑48 (MQ=255)
cTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTga < 1:1868484/50‑1 (MQ=255)
cTACCGTTTTACTCAAAATGCC‑GGGGGG‑TGGTAATGGGATCTCCAGt > 1:2561183/1‑47 (MQ=255)
tACCGTTTTACTCAAAATGCC‑GGGGGG‑TGGTAATGGGATCTCCAGTga > 1:3146251/1‑48 (MQ=255)
aCCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTga > 1:3575/1‑48 (MQ=255)
aCCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTga > 1:3850097/1‑48 (MQ=255)
aCCGTTTTACTCAAAATGCC‑GGGGGG‑TGGTAATGGGATCTCCAGTga > 2:1403136/1‑47 (MQ=255)
ccGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTgaga < 1:1391470/49‑1 (MQ=255)
ccGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTgag < 2:3903613/48‑1 (MQ=255)
ccGTTTTACTCAAAATGCC‑GGGGGG‑TGGTAATGGGATCTCCAGTgagaga < 1:5207535/50‑1 (MQ=255)
ccGTTTTACTCAAAATGCC‑GGGGGG‑TGGTAATGGGATCTCCAGTgaga < 1:578281/48‑1 (MQ=255)
cGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTga > 1:290266/1‑46 (MQ=255)
gTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTga > 1:577946/1‑45 (MQ=255)
ttttACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTga > 2:3464275/1‑44 (MQ=255)
ttttACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGGga > 1:213216/1‑44 (MQ=255)
tttACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATc > 2:4729087/1‑49 (MQ=255)
tttACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATc > 2:3577088/1‑49 (MQ=255)
ttACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCg < 2:5019196/49‑1 (MQ=255)
ttACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCg < 1:1664222/49‑1 (MQ=255)
ttACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCg < 2:3725546/49‑1 (MQ=255)
ttACTCAAAATGCC‑GGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCg > 1:118315/1‑48 (MQ=255)
tACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCg > 1:2837238/1‑48 (MQ=255)
aCTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGaa < 2:5260043/49‑1 (MQ=255)
aCTCAAAATGCC‑GGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAg < 1:4636934/49‑1 (MQ=255)
cTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAg < 2:4908134/49‑1 (MQ=255)
cTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGc > 1:626033/1‑50 (MQ=255)
tCAAAATGCC‑GGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCgg > 1:4037430/1‑50 (MQ=255)
cAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGCGAGAGATCGAAGCgg > 1:2577883/1‑50 (MQ=255)
aaaaTGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCg < 2:4968417/48‑1 (MQ=255)
aaaaTGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt < 1:5372551/50‑1 (MQ=255)
aaaTGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:1796328/1‑50 (MQ=255)
aaaTGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc < 2:519565/50‑1 (MQ=255)
aaaTGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc < 2:91245/50‑1 (MQ=255)
aaaTGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc < 1:1137525/50‑1 (MQ=255)
aaaTGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc < 2:4363473/50‑1 (MQ=255)
aaaTGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc < 2:3029682/50‑1 (MQ=255)
aaTGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:2724787/1‑49 (MQ=255)
aaTGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 2:316203/1‑49 (MQ=255)
aaTGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCg < 1:4948317/50‑1 (MQ=255)
aTGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:3916907/1‑48 (MQ=255)
aTGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCga < 2:2605053/50‑1 (MQ=255)
tGCC‑GGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCgaga < 2:2489290/50‑1 (MQ=255)
|
TTAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑GGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCGAGA > NC_000913/3948750‑3948845
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
