Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F9 I0 R1
|
165 |
96.4 |
2178490 |
87.4% |
1904000 |
226.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,560,455:1 |
+G |
100% |
intergenic (‑2/+1) |
glpR ← / ← glpR |
pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,560,455 | 1 | . | G | 95.4%
| 193.0
/ ‑0.9
| 65 | intergenic (‑2/+1) | glpR/glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| Reads supporting (aligned to +/- strand): ref base . (3/0); new base G (47/15); total (50/15) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| Rejected as polymorphism: E-value score below prediction cutoff. |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
ATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GC‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACC > NC_000913/3560218‑3560672
|
aTCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCCTGTT‑G‑Gc > 1:408222/1‑238 (MQ=255)
ttAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGACCAg > 1:230400/1‑239 (MQ=255)
cGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCGGGATCAGGTTTTg > 1:371805/1‑238 (MQ=255)
tGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGATCTGGGTGGCCTTGTGGTCGGG‑CCACGCGGTGTTAACCGGACTGGAAGCGCGCG‑CCG‑CCCCGCCATGCTGG‑GC‑CACGGCCAGGTTTTGCTcc > 2:207805/1‑239 (MQ=255)
ttgGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGGG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTc > 1:146412/1‑239 (MQ=255)
ttgGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACGGCCATGAT‑G‑GCGCAGGACACGGGTTTGCTCCCCCAGccc > 1:25515/1‑237 (MQ=255)
ttgGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGcacgct > 1:926063/1‑233 (MQ=255)
tGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGCGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGACCAGGTTTTGCTCCGCCAGCCCAtta > 1:23975/1‑238 (MQ=255)
tGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCCGCG‑CCG‑CCCCGCCATGAG‑G‑GCGCAGGGCCAGGTTTTGCCCCGCCAGCCCATTGGGGGcg > 2:639033/1‑239 (MQ=255)
tGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCCGGTTTTGCTCCGCCAGCTCATTGAGGTcg > 1:193681/1‑239 (MQ=255)
tGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGACCAGGTTTTGCTCCCCCAGCCCATTGGGGGcg > 2:601828/1‑239 (MQ=255)
tGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCC‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTc > 1:172146/1‑238 (MQ=255)
cTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGCCGGGGGGAAAAg > 2:378709/1‑238 (MQ=255)
gtgATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGGGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAg > 1:840054/1‑236 (MQ=255)
gCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCCCATTGGGGTCGCGGCGAAAAGTCTGCGGGCTg > 1:363446/1‑239 (MQ=255)
tgcgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑GCCC‑CGGGGTCAGGTTTTGCTCCGCCAGCCCATTGGGGGCCCGGCGAATAGTGTGGGGGCTGACgg > 2:588318/1‑239 (MQ=255)
gcgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGCGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCCTGATGG‑GG‑CAGGGCCAGGTTTTGCCCCGCCAGGCCATTGGGGTCGCGGCGAAACGTCTGGGGGcgtggggg > 2:119791/1‑232 (MQ=255)
cgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGCAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCACCCCATTGAGGTCCCGGCGAATAGTCTCCGGGCTGACGgag > 1:405478/1‑239 (MQ=255)
cgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCCCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGgag > 1:1032872/1‑239 (MQ=255)
cgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCACCG‑CCG‑CCCCGCCATGAT‑G‑CCGCGGGATAAGGTTTTGCTCCGCCACCGCATTGAGGCCGCGGCGAATAGCCTGGGGGCTGGCGgag > 2:712952/1‑239 (MQ=255)
gcgcTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACg > 1:432817/1‑233 (MQ=255)
aCCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCGGCCCATTAAGGTCGCGGCGAAAAGTCTGCGGGCTGCCGGAGCAATGc > 1:593407/1‑237 (MQ=255)
aCCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGGGGGCTGACGGGGAAATGc > 1:1052287/1‑237 (MQ=255)
aCCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGGCGCGGGGAAAAGTCTGCGGGCGGCCGGGGAAAGGcc > 2:1058587/1‑237 (MQ=255)
cTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCCCCAGCCCATTGAGGTCCCGGGGAAAAGTTTGGGGGGTGAGGGGGAAAGTCTCCAcc > 2:765823/1‑239 (MQ=255)
ccGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTACTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCCCATTGAGGTCGCAGCGAATAGTCTGCGGGCTGACGGCGGAATGCTATACCa > 1:160715/1‑237 (MQ=255)
ggggggcgtatatCAAAAAACGGGGTCGAGCCTTTGGGGTTTTG‑CCCCCCCCCTTGGCGGGCAATGCGCTCTTTTTCTTCGGTCGGGGTGGCCTTGCGATCGTG‑CCACGGGGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCtt < 1:639033/229‑1 (MQ=255)
gtgCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAATGCAGCG‑CCG‑CCCCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGCCGCGGCGAAAATTCTCCGGGCTGCCGGGGAAATACTCTACAACCACTTCggg > 2:457801/1‑238 (MQ=255)
gCCAATATGGAAAAACGGCGTCGGGCCTTTGGGGATTTC‑CTCCGCCACTTGGCGGGCGAGGCGCTCTTTTTCTTCGGTCGGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTa < 1:765823/238‑1 (MQ=255)
atatCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGGGAACTGCTCTACCAGCCCTTCGGTCCTgcc > 1:802716/1‑237 (MQ=255)
cGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCCCTACCAGCTCTTCGGTACTGACATa > 1:1007436/1‑238 (MQ=255)
gATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTTGGGTCGCGGCGAATAGTCTGCGGGCTGACGGGAGAATGCTCTACCAGCTCTTCGGAACTAACATaa > 1:691442/1‑238 (MQ=255)
gATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCCCTTCGGTACTGCCATaa > 1:706372/1‑238 (MQ=255)
aaCCGCGTCGTGCTTTTGGGGGTTTGTCCCCGCCTCTTGGGGGGGGTGGCGCTCTTTTTCTGCGGGGTGGGGGGCCTTGCGATCGTG‑CCACGGCGTGTAAACCGAACTGGAAGGCAGCG‑CCG‑CCCCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct < 2:672874/239‑1 (MQ=255)
cGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCCCGGCGAATAGTCTGCGGGCTGACGGGGAAATGCGCTACCACCTCTTCGGTCCTGACCTAACCCTGCTGtt > 1:1065782/1‑239 (MQ=255)
tCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTa > 1:181856/1‑218 (MQ=255)
tCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCAGCGAATAGTCTCCGGGCTGCGGGAGAAATGCCTTACCCGCTCTTCGGCACTGACATAACCCTGCTGTTTa > 2:251541/1‑239 (MQ=255)
aGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGCCATAACCCTCCTGTTTAAcc > 1:699526/1‑239 (MQ=255)
ctttGGGGTTTGT‑CCCCGCCCGTTGGGGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGGGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCAGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg < 1:601828/236‑1 (MQ=255)
tttG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGGACTGCCATAACCCTGCTGGTTAAACAGTTCGaaaaa > 2:1003729/1‑237 (MQ=255)
tttG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGGCTGCGGGCTGACGGAGAAAGCCTCTACCGGCCCTTCGGAACTGACATAACCCTGCAGTTTAACCAGTTCGttaat > 1:1067179/1‑238 (MQ=255)
ttG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGCCGGAGAAATGCTCTACCAGCTCTTCGGTACTTACATAAACCCGCGGTTTAACCAGGTCGaaaata > 2:7204/1‑238 (MQ=255)
ttG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCCCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGCCGGAGAAATGCTCTACCAGCTCTTCGGTACTTACAAAACCCTGCTGTTTAACCTGtctcttataaa > 2:927307/1‑229 (MQ=255)
ccACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGCGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCCGTAATACCGTtctg > 1:693774/1‑238 (MQ=255)
gtttGGGGGGGATGCGCTCTTTTTCTTGGGTCTGGGTGGCCTTGCGATCGGG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGt < 1:215822/238‑1 (MQ=255)
cttggggggCGATGCGCTTTTTTTCTGCGGTCTGGTGGGCCTGGCGATCGTC‑ACACGGCGTGTTAACCGAAGTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGt < 1:470762/233‑1 (MQ=255)
tGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCAAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGGATAGTCTGCGGGCTGACGGAGGAATGCTCTACCCCCTCTTCGGTACTGCCCTAACCCTGCTGTTTAACCAGTTCGATAAAACCGTTGTGACGtttg > 2:877474/1‑237 (MQ=255)
gATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGCCATAACCCCGCTGTTTAACCAGGTCGTAAAACCCGTTGGGACGTTGgggttgtt > 2:788624/1‑239 (MQ=255)
ccctttttttCTGGGGTCGGGGGGGCTTTGCG‑GCGTGCCCAGGGCG‑GTGAACCCGACTGGGAGGGCGCGCCCG‑CACCGCCATGAT‑G‑GCGCAGGAGCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCCCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCAt < 2:405478/234‑1 (MQ=255)
ttttcgcgggTCGGGGTGGCCTGGCGATCGTG‑CCGCGGCTTGTTAACCGACCGGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATaa < 1:119791/231‑1 (MQ=255)
tgcGGTTTGGGTGGCTTTGGGCTCGTG‑CCAGGGCGTGTTAACCGAGCTGGAAGGCGGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCGGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATccc < 2:322936/237‑1 (MQ=255)
cGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGGT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCAGCGAATAGTCTGCGGGCTGACGGCGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAAAACCGTTGTGACGTTGTGTTTTTTTCATTTTTAAATCCCTg > 2:413580/1‑239 (MQ=255)
gTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTTTACCAGCCCTCCGGAACTGACATAACCCTGCTGTTTAACCAGGTCGATAAAACCGTTGGGACGTGTGGTTTTTTTCATTTTAAAATCCCCGGa > 2:353030/1‑239 (MQ=255)
cggggTGGCCTTGGAATGGTG‑CCAGGGGGTGTTACCCGAACGGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGaa < 1:788624/236‑1 (MQ=255)
ccTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTTTAAATCCCTGGAATTAttttcg > 1:701772/1‑239 (MQ=255)
cGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTAttttcgttttc > 1:396645/1‑239 (MQ=255)
cGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGAAAAAACCGTTGTGACGTTGGGGTTGTTTAATTTTTAAATCCCCGGAATAATTTTCGTTTTCgcgc > 2:875367/1‑239 (MQ=255)
gTG‑CCACGGGGTGTTACCCGAACGGGAAGGCAGGG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCa < 1:378709/239‑1 (MQ=255)
gTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGGGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCa > 1:545583/1‑239 (MQ=255)
ggtTAACCGAACGGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAt < 1:7204/237‑1 (MQ=255)
gtTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTTGGACGTTGTGTTTGTTTCATTTTTAAATCCCTGGAATTATTTTCGTTTTCGGCCATTTAGCGAATca > 2:682661/1‑239 (MQ=255)
gAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCCTTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACaaaa > 1:838455/1‑238 (MQ=255)
atgggAAGGCAGGC‑CCG‑CACCGCAAGTAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGGATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGcc < 1:877474/236‑1 (MQ=255)
ttgggggCAGCC‑CCGCCCCCGCTCTGAT‑G‑GCGAAGGTTCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGGTGGGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGcc < 2:160715/233‑1 (MQ=255)
aGCG‑CCG‑CACCGCCATGAT‑G‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTaaa > 1:84295/1‑238 (MQ=255)
ccg‑ccc‑cCCCGCCATGGT‑G‑GCGCAGGAACAGGTTTGGCTCCGCCCGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAAcc < 2:1052287/238‑1 (MQ=255)
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ATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTG‑CCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCG‑CACCGCCATGAT‑G‑GC‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACC > NC_000913/3560218‑3560672
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
