Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 773 79.9 4112934 92.2% 3792125 104.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,250,629 (C)5→6 coding (210/1071 nt) dhaK ← dihydroxyacetone kinase, PTS‑dependent, dihydroxyacetone‑binding subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,250,6241.C98.4% 218.6 / ‑3.8 62coding (215/1071 nt)dhaKdihydroxyacetone kinase, PTS‑dependent, dihydroxyacetone‑binding subunit
Reads supporting (aligned to +/- strand):  ref base . (1/0);  new base C (33/28);  total (34/28)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGGTCGCTGTTTCAAAGTTAAGAATATCGCCGGTGTAATTTTTGATAATCAACAGTACACCTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGG‑CCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCACCCGACAGCAGGGCGACTTTTCCTGCAACAGGGGCATCAGCTCGGGTGACATACACCGGATCCTGATGCAG  >  NC_000913/1250487‑1250757
                                                                                                                                           |                                                                                                                                     
cGGTCGCTGTTTCAAAGTTAAGAATATCGCCGGTGTAATTTTTGATAATCAACAGTACACCTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGG‑c                                                                                                                                      <  1:1758619/139‑1 (MQ=255)
cGGTCGCTGTTTCAAAGTTAAGAATATCGCCGGTGTAATTTTTGATAATCAACAGTACACCTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGG‑c                                                                                                                                      <  1:1251484/139‑1 (MQ=255)
      cTGTTTCAAAGTTAAGAATATCGCCGGTGTAATTTTTGATAATCAACAGTATACCTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCTCGGAC‑AGG‑ccccccg                                                                                                                                <  1:1374233/139‑3 (MQ=255)
      cTGTTTCAAAGTTAAGAATATCGCCGGTGTAATTTTTGATAATCAACAGTACACCTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGG‑ccccccg                                                                                                                                <  2:1403525/139‑3 (MQ=255)
          agacaggTTAAGAATATCGCCGGTGTAATTTTTGATAATCAACAGTACACCTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAg                                                                                                                             <  2:682900/133‑1 (MQ=255)
                   aaGAATATCGCCGGTGTAATTTTTGATAATCAACAGTACACCTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTg                                                                                                                    >  2:872046/1‑139 (MQ=255)
                   aaGAATATCGCCGGTGTAATTTTTGATAATCAACAGTACACCTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTg                                                                                                                    >  2:1680861/1‑139 (MQ=255)
                      aaTATCGCCGGTGTAATTTTTGATAATCAACAGTACACCTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGAcc                                                                                                                 <  2:1404664/139‑1 (MQ=255)
                        tatCGCCGGTGTAATTTTTGATAATCAACAGTACACCTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGa                                                                                                               <  1:872046/139‑1 (MQ=255)
                           cGCCGGTGTAATTTTTGATAATCAACATTACACCTTCACCCCCAACAACTTGCATACCTCATTCAAAGATTTTATGGGGCGTATGTGAGCTGACAATTTCGCCCGGACAATC‑CCCCCGAAAGCATCCACTGAcctgtct                                                                                                            >  1:682900/1‑134 (MQ=255)
                                gtgtAATTTTTGATAATCAACAGTACACCTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑Agg                                                                                                                                        <  2:1472793/106‑1 (MQ=255)
                                gtgtAATTTTTGATAATCAACAGTACACCTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑Agg                                                                                                                                        >  1:1472793/1‑106 (MQ=255)
                                gtgtAATTTTTGATAATCAACAGTACACCTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACca                                                                                                       >  2:1787318/1‑139 (MQ=255)
                                  gtAATTTTTGATAATCAACAGTACACCTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACcaca                                                                                                     <  1:601572/139‑1 (MQ=255)
                                           gATAATCGACAGTACACCTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCgg                                                                                            >  1:1349350/1‑139 (MQ=255)
                                                         cacCTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTgc                                                                              <  1:1680861/139‑1 (MQ=255)
                                                          acCTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGAc                                                                                                                  >  2:1526712/1‑102 (MQ=255)
                                                          acCTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGAc                                                                                                                  <  1:1526712/102‑1 (MQ=255)
                                                          acCTTCGCCACCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTgcc                                                                             >  2:658206/1‑139 (MQ=255)
                                                            cTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGAcc                                                                                                                 >  2:226166/1‑101 (MQ=255)
                                                            cTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGAcc                                                                                                                 <  1:226166/101‑1 (MQ=255)
                                                            cTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACcaca                                                                                                     >  2:1716348/1‑113 (MQ=255)
                                                            cTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACcaca                                                                                                     <  1:1716348/113‑1 (MQ=255)
                                                            cTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTgccgc                                                                           <  2:1122974/139‑1 (MQ=255)
                                                             ttCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTgccgcc                                                                          <  1:1787318/139‑1 (MQ=255)
                                                              tCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGAcc                                                                                                                 >  1:1725999/1‑99 (MQ=255)
                                                              tCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGAcc                                                                                                                 <  2:1725999/99‑1 (MQ=255)
                                                              tCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCa                                                                         >  2:1172561/1‑139 (MQ=255)
                                                              tCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGG‑c                                                                                                                                      >  1:1284468/1‑77 (MQ=255)
                                                              tCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGG‑c                                                                                                                                      <  2:1284468/77‑1 (MQ=255)
                                                               cgccgcCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGAc                                                                                                                  >  2:1036693/1‑97 (MQ=255)
                                                               cgccgcCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGAc                                                                                                                  <  1:1036693/97‑1 (MQ=255)
                                                                 ccgccATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATccc                                                                                                                       <  2:111358/90‑1 (MQ=255)
                                                                 ccgccATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATccc                                                                                                                       >  1:111358/1‑90 (MQ=255)
                                                                 ccgccATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATc                                                                                              >  1:219752/1‑115 (MQ=255)
                                                                 ccgccATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATc                                                                                              <  2:219752/115‑1 (MQ=255)
                                                                 ccgccATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGc                                                                                           >  1:6977/1‑118 (MQ=255)
                                                                 ccgccATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGc                                                                                           <  2:6977/118‑1 (MQ=255)
                                                                 ccgccATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCAccc                                                                      >  2:1491188/1‑139 (MQ=255)
                                                                      aTCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCACCCGAcag                                                                 >  1:1624288/1‑139 (MQ=255)
                                                                         aaCTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCACCCGAcagcag                                                              <  2:1349350/139‑1 (MQ=255)
                                                                           cTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGa                                                                                                                   >  2:1667147/1‑84 (MQ=255)
                                                                           cTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGa                                                                                                                   <  1:1667147/84‑1 (MQ=255)
                                                                                aTGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCACCCGACAGCAGGGCGACt                                                       <  1:1491188/139‑1 (MQ=255)
                                                                                 tGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGAcc                                                                                                                 >  2:159571/1‑80 (MQ=255)
                                                                                 tGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGAcc                                                                                                                 <  1:159571/80‑1 (MQ=255)
                                                                                   gcgcATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTgccgc                                                                           >  2:965059/1‑116 (MQ=255)
                                                                                   gcgcATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTgccgc                                                                           >  1:130764/1‑116 (MQ=255)
                                                                                   gcgcATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTgccgc                                                                           <  1:965059/116‑1 (MQ=255)
                                                                                   gcgcATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTgccgc                                                                           <  2:130764/116‑1 (MQ=255)
                                                                                   gcgcATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCACCCGACAGCAGGGCGACtttt                                                    >  1:385016/1‑139 (MQ=255)
                                                                                     gcATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑Agg                                                                                                                                        >  1:871298/1‑53 (MQ=255)
                                                                                     gcATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑Agg                                                                                                                                        <  2:871298/53‑1 (MQ=255)
                                                                                      cATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGG‑ccccc                                                                                                                                  <  2:1712080/57‑1 (MQ=255)
                                                                                      cATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGG‑ccccc                                                                                                                                  >  1:1712080/1‑57 (MQ=255)
                                                                                         tCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCACCCGACAGCAGGGCGACTTTTCCTGCa                                              >  1:890920/1‑139 (MQ=255)
                                                                                                   tATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCAcc                                                                       >  2:1534997/1‑104 (MQ=255)
                                                                                                   tATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCAcc                                                                       <  1:1534997/104‑1 (MQ=255)
                                                                                                   tATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCACCCGACAGCAGGGCGACt                                                       >  2:1037904/1‑120 (MQ=255)
                                                                                                   tATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCACCCGACAGCAGGGCGACt                                                       <  1:1037904/120‑1 (MQ=255)
                                                                                                   tATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGG‑cccccc                                                                                                                                 <  2:244243/45‑2 (MQ=255)
                                                                                                   tATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGG‑cccccc                                                                                                                                 >  1:244243/1‑44 (MQ=255)
                                                                                                         gCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCACCCGACAGCAGGGCGACTTTTCCTGCCACAGGGGCATCAGCTc                              >  2:1098212/1‑139 (MQ=255)
                                                                                                         gCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCACCCGACAGCAGGGCGACTTTTCCTGCAACAGGGGCATCAGCTc                              >  1:1116491/1‑139 (MQ=255)
                                                                                                         gCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCACCCGACAGCAGGGCGACTTTTCCTGCAACAGGGGCATCAGCTc                              >  2:880756/1‑139 (MQ=255)
                                                                                                         gCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCACCCGACAGCAGGGCGACTTTTCCTGCAACAGGGGCATCAGCTc                              >  2:461620/1‑139 (MQ=255)
                                                                                                              ggtgaggtgaAAATTTCGCCCGGAC‑AGGCCCCCCGATAGCATCCCCTGACCGATATAACCACAGTGCATCAGCTCGTGTCCGCTGCCGCCACCCGACAGCACGGCGACTTTTCCTGCAACAGGGGCATTAACTCgagcg                         >  1:157666/1‑135 (MQ=255)
                                                                                                              ggtgaggtgaAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGGCCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCACCCGACAGCAGGGCGACTTTTCCTGCAACAGGGGCATCAGCTCGGGTg                         <  2:157666/139‑1 (MQ=255)
                                                                                                                  aggtgaAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCACCCGACAGCAGGGCGACTTTTCCTGCAACAGGGGCATCAGCTCGGGTGACAt                     <  1:1172561/139‑1 (MQ=255)
                                                                                                                   ggtgaAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTgccgc                                                                           <  2:715280/84‑1 (MQ=255)
                                                                                                                   ggtgaAAATTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTgccgc                                                                           >  1:715280/1‑84 (MQ=255)
                                                                                                                       aaaaTTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCACCCGACAGCAGGGCGACTTTTCCTGCAACAGGGGCATCAGc                                >  2:334206/1‑123 (MQ=255)
                                                                                                                       aaaaTTTCGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCACCCGACAGCAGGGCGACTTTTCCTGCAACAGGGGCATCAGc                                <  1:334206/123‑1 (MQ=255)
                                                                                                                              cGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCACCCGACAGCAGGGCGACTTTTCCTGCAACAGGGGCATCAGCTCGGGTGACATACACCGGATCCt         <  2:385016/139‑1 (MQ=255)
                                                                                                                              cGCCCGGAC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCACCCGACAGCAGGGCGACTTTTCCTGCAACAGGGGCATCAGCTCGGGTGACATACACCGGATCCt         >  1:1002044/1‑139 (MQ=255)
                                                                                                                                     aC‑AGGCCCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCACCCGACAGCAGGGCGACTTTTCCTGCAACAGGGGCATCAGCTCGGGTGACATACACCGGATCCTGATGCAg  >  1:132802/1‑139 (MQ=255)
                                                                                                                                           |                                                                                                                                     
CGGTCGCTGTTTCAAAGTTAAGAATATCGCCGGTGTAATTTTTGATAATCAACAGTACACCTTCGCCGCCATCAACTTGCATGGCGCATTCAAAGATTTTATCGGGCGTCGGTGAGGTGAAAATTTCGCCCGGAC‑AGG‑CCCCCGAAAGCATCCCCTGACCGATATAACCACAGTGCATCGGCTCGTGTCCGCTGCCGCCACCCGACAGCAGGGCGACTTTTCCTGCAACAGGGGCATCAGCTCGGGTGACATACACCGGATCCTGATGCAG  >  NC_000913/1250487‑1250757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A