Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F27 I0 R1 60 79.9 2053078 82.8% 1699948 215.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,560,455:1 +G 100% intergenic (‑2/+1) glpR ← / ← glpR pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,560,4551.G94.1% 199.7 / 1.4 67intergenic (‑2/+1)glpR/glpRpseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
Reads supporting (aligned to +/- strand):  ref base . (2/2);  new base G (45/18);  total (47/20)
Fisher's exact test for biased strand distribution p-value = 5.77e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: E-value score below prediction cutoff.

CGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAAC  >  NC_000913/3560223‑3560682
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                    
cGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGcccagg                                                                                                                                                                                                                                 >  1:177651/1‑234 (MQ=255)
      aGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCAGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGTTCGTGCCACGGCGGGTTTACCGCACTGGGAGGCACGGCCGCACCGCCCTGATGGCGCAGGacacggt                                                                                                                                                                                                                          >  2:386962/1‑233 (MQ=255)
            gTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCCCGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGc                                                                                                                                                                                                                     >  1:814352/1‑238 (MQ=255)
            gTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGGTCAGGTTTTGc                                                                                                                                                                                                                     >  1:1006706/1‑238 (MQ=255)
                      ttgGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGGTTTAACCGAACTGGAAGGCCGCGCCGACCCGCCATGACGGCGCAGGATCAGGTTTTGTCCCGCCAGcc                                                                                                                                                                                                           >  2:66405/1‑237 (MQ=255)
                                                        gtgcgtgcGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCCTGCTGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACg                                                                                                                                                                        >  1:907835/1‑239 (MQ=255)
                                                         tgcgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCCCGGCGAATAGTCTGCGGGCTGACgg                                                                                                                                                                       >  1:869585/1‑239 (MQ=255)
                                                         tgcgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGCCTGGGGGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCCCCGGATCAGGTTTTGCTCCGCAAGGCCATTGAAGCAGCGGGGAAAAGTCGGCGGGCTGAggg                                                                                                                                                                       >  2:361042/1‑239 (MQ=255)
                                                          gcgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCCGTAGTGCGCCGGATCAGGTTTTGTTCCGCCAGCCCCTTTGTGTCGGGGCGAAAAGTCTGGGGGGGGACgag                                                                                                                                                                      >  2:861926/1‑237 (MQ=255)
                                                          gcgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCCGGTTTTGCTCCGCCAGCCCCTTTGGGGCGCGGCGAAAAGTCTGGGGGCTGACggg                                                                                                                                                                      >  1:520635/1‑238 (MQ=255)
                                                                   aCCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGTTCAGGTTTTGCTCCGCCAGCTCATTGCGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGctc                                                                                                                                                             >  1:366202/1‑239 (MQ=255)
                                                                   aCCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGGGGTCGCGGCGAATAGGCTGCGGGCTGACGGAGAAATGc                                                                                                                                                               >  1:919333/1‑237 (MQ=255)
                                                                   aCCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGCCGGAGAAATgt                                                                                                                                                               >  1:214647/1‑236 (MQ=255)
                                                                   aCCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCCCATTGAGGTCCCGGCGAATAGTCTGCGGGCTGACGGGGAAATGctc                                                                                                                                                             >  1:138961/1‑239 (MQ=255)
                                                                   aCCGCCTCCGGCGTGGTGCCGATATCGATAAACAGCGTAGAGCCATTGGGGCTTTGCTCCGCCACTTTGCGGGCGATCCGCTCTTTTTCTTCGGTCTGGGAGGCCTTGCGATCGTGCCACGGCGCGTTAACCGAACTGGAAGGCAGCGCCGCCCCGCCATGATGGCGCAGGATCAGGGTTTGCTCCGCCCGCtactt                                                                                                                                                                                                       >  1:79526/1‑193 (MQ=255)
                                                                       cTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCCCCTTGAGGCCCCGGCGAATAGTCTGCGGGCTGACGGGGAAATGCTCTAc                                                                                                                                                          >  1:996469/1‑238 (MQ=255)
                                                                         tCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGCTCAGGTTTTGCTCCGCCAGCTCATTGCGGTCGCGGCGAATAGTCTGCGTGCTGCCGGAGAAATGCTCTACCa                                                                                                                                                        >  1:579271/1‑238 (MQ=255)
                                                                          ccGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCCCACCCCCATGATGGCGCAGGACCAGGGTTTGCTCCGCCAGCTCATTGAGGTCCCGGCGACTAGTCTGCGGGCGGCCGGGGAAAGGcctccccag                                                                                                                                                       >  2:95009/1‑230 (MQ=255)
                                                                              cGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCACCTCATTGAGGTCGCGGCGACAAGTCTGCGGGTTGCCGGAGAAATGCTCTACCAGctct                                                                                                                                                   >  1:292197/1‑238 (MQ=255)
                                                                                            cGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCCTTGAGGTCGCGGCGCATAGTCTGCGGTCTGACGGAAAAATGCTTTACCAGCTCTTCGGTACTGACaaa                                                                                                                                     >  2:361700/1‑236 (MQ=255)
                                                                                             gATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTTCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATaa                                                                                                                                    >  1:62411/1‑238 (MQ=255)
                                                                                                      cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCCTTGGGGTCGCGGCGAATAGTCTGCGGGCTGACGGCGAAATGCTCTACCAGCTATTCGGACCTGACCTAACCCTGCTGtt                                                                                                                          >  1:658374/1‑239 (MQ=255)
                                                                                                      cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATa                                                                                                                                                                                       >  1:642253/1‑178 (MQ=255)
                                                                                                        tCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTGGCTCCGCCAGCGCATTGCGGTCGCGGCGAATAGTCTTCGGGCTGCAGGAGAAATGCCGTACACGCTCTTCGGTACTGACTTAACCCTCCTGTTTa                                                                                                                        >  1:760395/1‑239 (MQ=255)
                                                                                                         cGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAAAAGCCTGCGGGCTGACGGCGAAATGCTCTACCAGCCCTTCGGTCCTGCCATAACCcggcg                                                                                                                             >  1:92011/1‑232 (MQ=255)
                                                                                                           aGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGGGAAATGCTCTACCAGCTCTTCGGTACTGACCTAACCCTGCTGTTTAAcc                                                                                                                     >  1:371050/1‑239 (MQ=255)
                                                                                                                  ggggATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAAcc                                                                                                                                  >  1:72331/1‑219 (MQ=255)
                                                                                                                      gtttGCCCCGCCACTGGGCGGGCGATGCGCTCTTTTTCTTGGGGCTGGGTGGCCTGGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGataa                                                                                                           <  1:861926/237‑1 (MQ=255)
                                                                                                                       tttGCCCCCCCCCTTTGCGGGCGATGCGTTTTTTTTCTTCGGTCTGGGTGCCCTTGCGATCGTCCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGataata                                                                                                         <  1:974251/239‑1 (MQ=255)
                                                                                                                        ttGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGAc                                                                                                                                        >  1:222906/1‑207 (MQ=255)
                                                                                                                        ttGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATAAGGTTTTGCTCCGCCAGCTCATTGAGGTCGTGGCTAATAGCCCTAGGGCTTACGGAGGAATGCCCTACCAGCTCTTCGGGACTGCACTAACCCTCCTGTTTAACCAGTTCGataatcc                                                                                                        >  2:322028/1‑237 (MQ=255)
                                                                                                                             ccGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAAc                                                                                                                      >  1:664325/1‑220 (MQ=255)
                                                                                                                              cGCCTCTTGGCGGGCGATGCGCTTTTTTTCTTCGGTCGGGGTGGCCTTGCGATCGTGCCAGGGCGTGTTAACCGAACTGAAAGGCGGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTtgt                                                                                                  <  1:95009/239‑1 (MQ=255)
                                                                                                                                  cttttGCGGGCGATGCGCTTTTTTTCTTCGGTCTGGGTGGCCTTGCAATCGTGCCAGGGGGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACg                                                                                              <  1:529999/237‑1 (MQ=255)
                                                                                                                                        cGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGCGGTCGCGGCGAATAGACTGCGGGCTGACGGAGCAATGCTCTa                                                                                                                                                           >  1:499369/1‑172 (MQ=255)
                                                                                                                                        cGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAAGGATCTACCAGCTCTTCCGTCATTACATAAACCTGCCGTTTAAACAGTTCAAAAGAACCGTTGGGCCGgtgtgt                                                                                        >  2:623375/1‑239 (MQ=255)
                                                                                                                                         gggCGGTGCTCTCTTTTTCTCCGGTCGGGGTGGCTTGGCGATCGTGCCACGGCGTGTTACCCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTgtgt                                                                                        <  1:66405/238‑1 (MQ=255)
                                                                                                                                              aTGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGtgtttgtt                                                                                   >  1:298361/1‑238 (MQ=255)
                                                                                                                                               tggcttttttttCTTCGGTGTGGGTGGGCTTGGGTGGGCCACACGGGGTGTTTAACGACCTGGGGGGCCGCGCCCAGCCGCCATGATGGCGCAGGGTCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTTCCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTc                                                                                 <  2:869585/232‑1 (MQ=255)
                                                                                                                                                      ttttcCCTCGGTTTGGGGCGCCTTGCGATGGTGCCCGGGGTTTTTAACCGAACTGGAAGGGCCCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTtata                                                                          <  1:243109/239‑1 (MQ=255)
                                                                                                                                                       ttttCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGAc                                                                                                                                        >  1:678149/1‑176 (MQ=255)
                                                                                                                                                              cGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGata                                                                                                            >  1:262297/1‑197 (MQ=255)
                                                                                                                                                              cGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGtgtttgt                                                                                    >  1:78847/1‑221 (MQ=255)
                                                                                                                                                                           cTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTAACAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCTTTTATAAATCCCTGGAATTAttttgtt                                                     >  2:600375/1‑236 (MQ=255)
                                                                                                                                                                              gggATCGGGCCACGGGGTTTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTAttttcgtttt                                                  <  1:385576/237‑1 (MQ=255)
                                                                                                                                                                               cGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAAcc                                                                                                                     >  2:301103/1‑171 (MQ=255)
                                                                                                                                                                               cGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAAcc                                                                                                                     <  1:301103/171‑1 (MQ=255)
                                                                                                                                                                               cGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTtata                                                                          >  1:1002612/1‑214 (MQ=255)
                                                                                                                                                                                     tGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg                                                                                                                   <  1:931676/167‑1 (MQ=255)
                                                                                                                                                                                     tGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg                                                                                                                   >  2:931676/1‑167 (MQ=255)
                                                                                                                                                                                         gcgggtttttAACCGTGCTGGAGGGCGGCGCCCCCCCGCCATGAGGGCGCAGGATCGGGTTTGGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAg                                       <  2:177651/231‑1 (MQ=255)
                                                                                                                                                                                         aCGGCGTGTTAACCGAACTGGAAGCCAGCGCAGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGCCGGAGAAATGCTCTACCAGCCCTTCGGTACTGACATAACCCTCATGTCTAACCAAGTCGATAATACCGTTCCGCCGTTGTGTTTGTTTCATTTATCAATCCCCTGAATTATTTTCGTTTTCTCCAATTGAg                                       >  2:6961/1‑239 (MQ=255)
                                                                                                                                                                                             gttgtTACCCGTATTGAAAGGCGCCGCCCCCCCGCCATGGTGGCGGAGGATCAGGTTTTGCCCCGCCAGCTCATTGAGGTCGCGGGTAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGa                                    <  2:366202/236‑1 (MQ=255)
                                                                                                                                                                                               ttttAACCGAACTGGAGGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAt                                  <  1:361700/236‑1 (MQ=255)
                                                                                                                                                                                               ttgtacccGACCTGGAAGGCCGCCCCGCTCCGCCATGATGGCGAGGGATCAGGTTTTGCTCCGGCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAt                                  <  2:578954/232‑1 (MQ=255)
                                                                                                                                                                                               tgtTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGATTc                                 >  1:578954/1‑239 (MQ=255)
                                                                                                                                                                                               gtttAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATGTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAt                                  <  1:6961/236‑1 (MQ=255)
                                                                                                                                                                                                         aCTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGACTAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATCCCGTTGTGACCTTGTGTTTGTTTCATTTATCAATCCCTGGAATTATTTTCGTTTTCTCGCATTTGGGGACTTAACAAAAGcc                       >  2:961786/1‑239 (MQ=255)
                                                                                                                                                                                                         aCTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCTTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGcc                       >  1:520989/1‑239 (MQ=255)
                                                                                                                                                                                                                 ccAGCCCCACCCCGACATGATGGGGCAGGATCAGGTTTTGCTCCGCCAGCTTATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCt                 <  1:961786/236‑1 (MQ=255)
                                                                                                                                                                                                                  cAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTaa               >  1:669208/1‑238 (MQ=255)
                                                                                                                                                                                                                    gcccgccACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAAcc            <  1:410379/233‑1 (MQ=255)
                                                                                                                                                                                                                     cgccgcACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATAATTTTCGTTTTCCGCCATTGAGCGATTCAACAAAAGCAATCGTTAAAccc           >  1:513693/1‑239 (MQ=255)
                                                                                                                                                                                                                       ccgcACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTTTAAATCCCTGGAATTATTTTCGTTTTCGCGCATTTAGCGAATCAACAAAAGCCACCGCTAAACCCAc         >  2:732048/1‑239 (MQ=255)
                                                                                                                                                                                                                          cACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct                                                                                                                                >  2:83049/1‑117 (MQ=255)
                                                                                                                                                                                                                          cACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTGCGGTACTGACATAACCct                                                                                                                                <  1:83049/117‑1 (MQ=255)
                                                                                                                                                                                                                              gCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATTCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAAc  <  1:386962/239‑1 (MQ=255)
                                                                                                                                                                                                                              gCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAAc  <  1:600375/239‑1 (MQ=255)
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                    
CGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAAC  >  NC_000913/3560223‑3560682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTG  >  NC_000913/3560212‑3560693
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                               
TTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCCCAGGA                                                                                                                                                                                                                                           >  M01186:129:000000000‑A5M8V:1:1105:10272:18472/1‑250 (MQ=60)
            GTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCCCGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCT                                                                                                                                                                                                                               >  M01186:129:000000000‑A5M8V:1:2109:20068:6791/1‑250 (MQ=60)
            GTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGGTCAGGTTTTGCT                                                                                                                                                                                                                               >  M01186:129:000000000‑A5M8V:1:2114:16223:14065/1‑250 (MQ=60)
             gtgtaggaacgtggagattgtttgggaaaatgcgcaaatggttgggttggaacggggggtgcgtacccgattccggcggggcgccaatacagaaaaacagcgttgggccagtgggaatttgccccgccaatttgcggtgtatgggcttttttcctgCGGTCTGGGTGGCCTTGCGATCGTGCCGGGGCGTGTTAACCGAGCGGGAAGGCAGGGCGGAACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTC                                                                                                                                                                                                                              <  M01186:129:000000000‑A5M8V:1:1108:16951:4021/94‑1 (MQ=57)
                           tggttgtgtgtaaaatgcgaaaatttgctgtgtggcagcgtggcggccacccccgtatccggggtggtgccgatatgaagaacccgggtctcgcctttggggttttcctccgccctTTTGCGGGTGATGCCCTCTTTTTCTGCGGTCTGGGGGGCCTTGCGATCGTCCCACGGTGTGTTAACCGAAGTGGAAGGCAGCGCCGCCCCGCCATGATG‑‑GCTCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAT                                                                                                                                                                                                               <  M01186:129:000000000‑A5M8V:1:2112:5661:16972/135‑1 (MQ=60)
                             tttgtgggtaaaaatcggaaagtctggttgatggggcggggcggggcctgccgtttcgggggtggtgccgattccgtaaaacgGCGTCGAGCCATGGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGT                                                                                                                                                                                                             <  M01186:129:000000000‑A5M8V:1:2110:20785:10743/168‑1 (MQ=60)
                                               aaaagtggttggttgggggagggggggctacgccgttcgcggggtggggcagatagcgaaaaccagggtggagccgttggggattgcctccgcccgtgTGCGGGCGATGCGCTCTTTTTCGTCGGTCTGGGTGGCCTTGCGATGGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGAACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGC                                                                                                                                                                                            <  M01186:129:000000000‑A5M8V:1:2113:6207:24155/152‑1 (MQ=60)
                                                   agaacgggtttgagcatgccgtccttctgcgttgccggcggggtgcccatatgaataaactgtgctggaattgtggggttttcccCCGCCAGTTTGCGGGCGATGCCCTCTTTTGCTTCGGTTTGGGTGGCCTGGCGTTCGTGCCACGGCGTTTTATCCGAAGTGGAAGGCAGCTCCCGACCGCCATGTTG‑‑GCGTAGGATCAGGTTGTGCTCCGCTAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGG                                                                                                                                                                                         <  M01186:129:000000000‑A5M8V:1:1113:2563:14392/164‑1 (MQ=60)
                                                        GTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCCTGCTG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGG                                                                                                                                                                                  >  M01186:129:000000000‑A5M8V:1:2111:19626:18544/1‑251 (MQ=60)
                                                         TGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCCCGGCGAATAGTCTGCGGGCTGACGGA                                                                                                                                                                                 >  M01186:129:000000000‑A5M8V:1:2110:23307:17575/1‑251 (MQ=60)
                                                         TGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTGCTTCGGTCTGGGCGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGCTG‑‑GCGCAGGATCAGGCTTTGCTCCGCCAGCTCATTAGGGCCGCGGCGAATAATCTGCGGGCTGCCGGA                                                                                                                                                                                 >  M01186:129:000000000‑A5M8V:1:2112:17724:13657/1‑251 (MQ=60)
                                                          GATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCCGGTTTTGCTCCGCCAGCCCCTTTGGGGCGCGGCGAAAAGTCTGGGGGCTGACGGga                                                                                                                                                                                >  M01186:129:000000000‑A5M8V:1:1114:7356:21703/1‑249 (MQ=60)
                                                           ATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGAGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCGGGATCAGGTTTTGCTCCCCCAGCTCATTGAGGTCGCGGCGAAAAGACTGCGGGCTCACGGAGA                                                                                                                                                                               >  M01186:129:000000000‑A5M8V:1:2102:15536:18191/1‑251 (MQ=60)
                                                           ATTGAGCAGTGCGTGCGCTACCGCTTCCGCCGTGGTGCCGCTATCGATAAACAGCGCCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATTCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCCCGGCGTGTTACCCGCACTGGAAGGCAGCGCCGCACCGCCCTTATGTCGCCGGATCAGGTTTTGCTCCGCCCGCTCATTCAGGTCGCGGCGACTTGTCTGCTGGCTGACGGAGA                                                                                                                                                                               >  M01186:129:000000000‑A5M8V:1:2107:6192:12595/1‑251 (MQ=60)
                                                                   gggggggccgtcccctttcgggggtggcgcagatgcggaaaaacgcgtgggggctctggggatttggccCCGCCACTTTGCGGGCTATGGGCTCTTTTTCTGCGGTCTGGGTGGCCTGGGGATCGTGCCACGGCGTGTTACCCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTC                                                                                                                                                                        <  M01186:129:000000000‑A5M8V:1:1113:17678:22834/181‑1 (MQ=60)
                                                                   GTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGTTCAGGTTTTGCTCCGCCAGCTCATTGCGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCA                                                                                                                                                                       >  M01186:129:000000000‑A5M8V:1:1110:16017:17411/1‑251 (MQ=60)
                                                                   GTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGGGGTCGCGGCGAATAGGCTGCGGGCTGACGGAGAAATGCT                                                                                                                                                                         >  M01186:129:000000000‑A5M8V:1:2111:13070:26824/1‑249 (MQ=60)
                                                                   GTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCtgtctcttttacccatttccgagcccacgggacgga                                                                                                                                                                        >  M01186:129:000000000‑A5M8V:1:1101:26496:16568/1‑214 (MQ=60)
                                                                   GTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGCCGGAGAAATGtc                                                                                                                                                                         >  M01186:129:000000000‑A5M8V:1:1106:27431:17593/1‑247 (MQ=60)
                                                                   GTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCCCATTGAGGTCCCGGCGAATAGTCTGCGGGCTGACGGGGAAATGCTCA                                                                                                                                                                       >  M01186:129:000000000‑A5M8V:1:1104:19643:18439/1‑251 (MQ=60)
                                                                   GTGCGTGCGCTACCGCCTCCGGCGTGGTGCCGATATCGATAAACAGCGTAGAGCCATTGGGGCTTTGCTCCGCCACTTTGCGGGCGATCCGCTCTTTTTCTTCGGTCTGGGAGGCCTTGCGATCGTGCCACGGCGCGTTAACCGAACTGGAAGGCAGCGCCGCCCCGCCATGATG‑‑GCGCAGGATCAGGGTTTGCTCCGCCcgctacttg                                                                                                                                                                                                                 >  M01186:129:000000000‑A5M8V:1:1103:5864:6167/1‑200 (MQ=60)
                                                                       GTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCCCCTTGAGGCCCCGGCGAATAGTCTGCGGGCTGACGGGGAAATGCTCTACC                                                                                                                                                                    >  M01186:129:000000000‑A5M8V:1:2114:22513:7876/1‑250 (MQ=60)
                                                                         GCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGCTCAGGTTTTGCTCCGCCAGCTCATTGCGGTCGCGGCGAATAGTCTGCGTGCTGCCGGAGAAATGCTCTACCAG                                                                                                                                                                  >  M01186:129:000000000‑A5M8V:1:2102:6789:15261/1‑250 (MQ=60)
                                                                            CTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCACTTGGGGATCTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCTGCGCCGCACGGCCATGATG‑‑GCGCAGGCTCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGCATAGTCTGCGGGCTGACGGtgaaaagccttacctgct                                                                                                                                                                >  M01186:129:000000000‑A5M8V:1:1109:3098:10121/1‑231 (MQ=60)
                                                                              ACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCACCTCATTGAGGTCGCGGCGACAAGTCTGCGGGTTGCCGGAGAAATGCTCTACCAGCTCTT                                                                                                                                                             >  M01186:129:000000000‑A5M8V:1:1108:2471:18942/1‑250 (MQ=60)
                                                                                         CGTGGTGCCTATTTCGATAACCAGCGTCGGGCATGTGGTGTTTTGCTCCGCCATTTTGGGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACA                                                                                                                                                  <  M01186:129:000000000‑A5M8V:1:2111:14306:14584/250‑1 (MQ=60)
                                                                                             GTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGCATAGTCTGCGGGCTGCCGGAGAAATGCTttacacgctcttcgcacatggcataac                                                                                                                                              >  M01186:129:000000000‑A5M8V:1:2109:17902:27650/1‑223 (MQ=60)
                                                                                             GTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTTCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAAC                                                                                                                                              >  M01186:129:000000000‑A5M8V:1:1102:15570:17690/1‑250 (MQ=60)
                                                                                                 tttggttttttccaatctgaaggcggcattagtgagtggcgcgcgtccggtgggcccggagatggtgaaaagggcaggGGGTGGCCTTGCGAACGTCCCACGGGGTGTACACCGAACTGAAAGCCAGGGCCGCACCGCCAGGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGC                                                                                                                                         <  M01186:129:000000000‑A5M8V:1:2114:5072:16733/173‑1 (MQ=60)
                                                                                                   ttattgaaaacgtggctcgggccttggggttgttgctccgcctgtttggggggggtgcgcttgtttgCTTCGGTCGGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAGGGCGGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTG                                                                                                                                       <  M01186:129:000000000‑A5M8V:1:1112:17944:3166/184‑1 (MQ=60)
                                                                                                   tgttggttaaggaggggtgagcttgtgggggttttctcctCCACTTTGCGGGCGATGCACTTTTTTTCTTCGGTCGGGGGGGCCTTGCGGTCGTGCCGGGGCGTTTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTCTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTG                                                                                                                                       <  M01186:129:000000000‑A5M8V:1:1106:19808:5018/211‑1 (MQ=60)
                                                                                                      TCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCCTTGGGGTCGCGGCGAATAGTCTGCGGGCTGACGGCGAAATGCTCTACCAGCTATTCGGACCTGACCTAACCCTGCTGTTT                                                                                                                                    >  M01186:129:000000000‑A5M8V:1:2104:3099:21271/1‑251 (MQ=60)
                                                                                                      TCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG                                                                                                                                                                                                 >  M01186:129:000000000‑A5M8V:1:2104:24891:11813/1‑190 (MQ=60)
                                                                                                        GATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTGGCTCCGCCAGCGCATTGCGGTCGCGGCGAATAGTCTTCGGGCTGCAGGAGAAATGCCGTACACGCTCTTCGGTACTGACTTAACCCTCCTGTTTAA                                                                                                                                  >  M01186:129:000000000‑A5M8V:1:2107:28452:17710/1‑251 (MQ=60)
                                                                                                         ATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAAAAGCCTGCGGGCTGACGGCGAAATGCTCTACCAGCCCTTCGGTCCTGCCATAACCCggcgg                                                                                                                                       >  M01186:129:000000000‑A5M8V:1:1103:28971:13545/1‑240 (MQ=60)
                                                                                                          aacagcggcgcggtcgttgggggttttcccCCGCCAGTTTGCGGGCGATGCGCTTTTTTCCTGCGGTTGGGGGGCCCTTGCAATCGTGCCCCGGGGTGTTAACCGAACTGGAAGTCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACC                                                                                                                                <  M01186:129:000000000‑A5M8V:1:2113:22428:4126/221‑1 (MQ=60)
                                                                                                          aaaccggggcgcggcgttggggattttgccccgccacttggggggcaatgcctttTTTTTCTGCGGTCCGGGTGGCCTGGCGAGCGTGCCCGGGCGTTTTAACCGAACGGGAGGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACC                                                                                                                                <  M01186:129:000000000‑A5M8V:1:2107:17624:7469/196‑1 (MQ=60)
                                                                                                           aaacggggtggggccttggggtttgtgccccgccagttgGCGGGCGGTGCGCTCTTTTCCTTCGGTCTGGGTGGCCTTGGGATCGTGCCCCGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCA                                                                                                                               <  M01186:129:000000000‑A5M8V:1:1104:19469:4991/212‑1 (MQ=60)
                                                                                                           aaaagtggcgcggctgtgggggatttctcccgcccttttggcggggagggcctttttttcctcggttggggtggccctgcgtgctggccagggggttTTAACCGAACTGGAAGGCCGCGCCGCACCGCCATGATG‑‑GCGCAGGATCGGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTTCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCA                                                                                                                               <  M01186:129:000000000‑A5M8V:1:2113:19590:6003/154‑1 (MQ=60)
                                                                                                           AAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGGGAAATGCTCTACCAGCTCTTCGGTACTGACCTAACCCTGCTGTTTAACCA                                                                                                                               >  M01186:129:000000000‑A5M8V:1:1110:5089:20047/1‑251 (MQ=60)
                                                                                                                  GTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCC                                                                                                                                            >  M01186:129:000000000‑A5M8V:1:1102:20375:24222/1‑231 (MQ=60)
                                                                                                                       ccggcaaacgagatgggggtccgtccggggggctcggagatgtgtaaaagagacggggggGGCCTGGCGATCGGGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAAT                                                                                                                     <  M01186:129:000000000‑A5M8V:1:1108:16445:24642/189‑1 (MQ=60)
                                                                                                                        tgaaaaagcgaccgccccgccatttgggGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATAC                                                                                                                   <  M01186:129:000000000‑A5M8V:1:2101:10193:15664/222‑1 (MQ=60)
                                                                                                                        ataagactgaatacgagtagggggcccgcctcgggggccgggagatggttaaaagagacaGCCTTGCGATCGTGCCACGGCGTGTTAACCGACCTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATAC                                                                                                                   <  M01186:129:000000000‑A5M8V:1:2112:15085:11405/190‑1 (MQ=60)
                                                                                                                        CCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACA                                                                                                                                                  >  M01186:129:000000000‑A5M8V:1:1106:15308:22537/1‑219 (MQ=60)
                                                                                                                         tatggggatttggccccgccccttgggggggcgtgcgcttttttctctcggtcgggcTGGCCTCGCGATCGGGCCAGGGCGTGGTAACCGAACGGGAAGCCAGCACCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCG                                                                                                                 <  M01186:129:000000000‑A5M8V:1:1104:13995:25971/194‑1 (MQ=60)
                                                                                                                             GGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACC                                                                                                                                >  M01186:129:000000000‑A5M8V:1:2104:16866:25985/1‑232 (MQ=60)
                                                                                                                                GGTTTGCCCCGCCACTGGGCGGGCGATGCGCTCTTTTTCTTGGGGCTGGGTGGCCTGGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA                                                                                                           <  M01186:129:000000000‑A5M8V:1:2110:20197:13340/250‑1 (MQ=60)
                                                                                                                                 ttttgccccccccCTTTGCGGGCGATGCGTTTTTTTTCTTCGGTCTGGGTGCCCTTGCGATCGTCCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACG                                                                                                         <  M01186:129:000000000‑A5M8V:1:2113:29286:15575/238‑1 (MQ=60)
                                                                                                                                  GTTGCCCCGCCACTGTGCGGGCAATGCGCTTTTGTTCTTCGGTCTGGGTGGCCTTGCGATCGCGCCACGGCGTGTTACCCGACCTGGAAGCGAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACG                                                                                                         <  M01186:129:000000000‑A5M8V:1:2106:26263:16560/250‑1 (MQ=60)
                                                                                                                                      ctccgccgcttgggggggtgtgcgcttttgTTCTTCGGTCTGGGGGGCCGTGCGGTCGGGCCACGGCGTGTAAACGGAACGGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCCCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTG                                                                                                    <  M01186:129:000000000‑A5M8V:1:1102:8788:8809/221‑1 (MQ=60)
                                                                                                                                        CCGCCTCTTGGCGGGCGATGCGCTTTTTTTCTTCGGTCGGGGTGGCCTTGCGATCGTGCCAGGGCGTGTTAACCGAACTGAAAGGCGGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTT                                                                                                  <  M01186:129:000000000‑A5M8V:1:1103:25572:15147/251‑1 (MQ=60)
                                                                                                                                        CCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGCGGTCGCGGCGAATAGACTGCGGGCTGACGGAGCAATGCTCTAC                                                                                                                                                                     >  M01186:129:000000000‑A5M8V:1:1114:5969:9267/1‑184 (MQ=60)
                                                                                                                                            cctttggggggtggTGCGCTCTTTTTCTTCGGTCTGGGGGGCCTGGCGCTCGTGCCCAGGGGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTT                                                                                              <  M01186:129:000000000‑A5M8V:1:2107:26163:18464/237‑1 (MQ=60)
                                                                                                                                            cctTTTGCGGGCGATGCGCTTTTTTTCTTCGGTCTGGGTGGCCTTGCAATCGTGCCAGGGGGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTT                                                                                              <  M01186:129:000000000‑A5M8V:1:2101:20761:5568/248‑1 (MQ=60)
                                                                                                                                             ttgttgcaggggagtgctgtgtttattgcggtgtgggtgctctggcaatcggGCCACGGCGTGTTAACCGAGCGGGAGGGCATGGACGGACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGGTCGTCCAGCTCCTTGAGGGCGCGGCGAATAGTCTGCGGGCTGGCGGATAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTT                                                                                             <  M01186:129:000000000‑A5M8V:1:2108:13709:28870/199‑1 (MQ=60)
                                                                                                                                             catttgcgggcgattgctttttttcctgCGGTCAGGGTGCCCTTGCGATCGGGCCACGGCGGTTTAACCGAACTGGAAGGCAGCGCCCAACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTT                                                                                             <  M01186:129:000000000‑A5M8V:1:1103:23181:22907/223‑1 (MQ=60)
                                                                                                                                              CTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTT                                                                                             >  M01186:129:000000000‑A5M8V:1:1108:22567:22625/1‑250 (MQ=60)
                                                                                                                                                   CGGGCGGTGCTCTCTTTTTCTCCGGTCGGGGTGGCTTGGCGATCGTGCCACGGCGTGTTACCCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTT                                                                                        <  M01186:129:000000000‑A5M8V:1:1102:26169:20026/250‑1 (MQ=60)
                                                                                                                                                       CGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACA                                                                                                                                                  >  M01186:129:000000000‑A5M8V:1:2105:13620:11905/1‑188 (MQ=60)
                                                                                                                                                              CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCTCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGAACTGACATCACCCTGCTGTGTAACCAGTTCGCTAATACCGTTGTGACGTTGTGTTTGTTctttctcttatacacatt                                                                            >  M01186:129:000000000‑A5M8V:1:2114:5759:18329/1‑233 (MQ=60)
                                                                                                                                                              CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTT                                                                                              >  M01186:129:000000000‑A5M8V:1:1103:19432:5645/1‑233 (MQ=60)
                                                                                                                                                              CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAA                                                                                                                      >  M01186:129:000000000‑A5M8V:1:1107:26312:24189/1‑209 (MQ=60)
                                                                                                                                                                tttttccctcggtttggggcgccttgcgatggtgcccggggtttTTAACCGAACTGGAAGGGCCCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAA                                                                          <  M01186:129:000000000‑A5M8V:1:1107:14472:12678/207‑1 (MQ=60)
                                                                                                                                                                          GGTCTGGATGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTACGGGCTGACGGAGAAATGCTCTCCCAGTTCTTCGGAACTGACATAACCCTGCTGTTTAACCAGTTTGTTAATACCGTTGTGACGTTGCGTTTGTTTATTTTTTAAATCCCTGGAATTATTTTCGT                                                                >  M01186:129:000000000‑A5M8V:1:1101:20483:15148/1‑251 (MQ=60)
                                                                                                                                                                               GGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAA                                                                                    >  M01186:129:000000000‑A5M8V:1:2114:22538:11737/1‑226 (MQ=60)
                                                                                                                                                                                        TGGGATCGGGCCACGGGGTTTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAG                                                  <  M01186:129:000000000‑A5M8V:1:1111:15908:6315/251‑1 (MQ=60)
                                                                                                                                                                                               GTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGATTCA                                           >  M01186:129:000000000‑A5M8V:1:2102:19662:15085/1‑251 (MQ=60)
                                                                                                                                                                                                         tgtTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATGTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCC                                  <  M01186:129:000000000‑A5M8V:1:1101:14127:7944/247‑1 (MQ=60)
                                                                                                                                                                                                         GTTTTAACCGAACTGGAGGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCC                                  <  M01186:129:000000000‑A5M8V:1:1110:5967:14993/250‑1 (MQ=60)
                                                                                                                                                                                                         GTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCTTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCA                                 >  M01186:129:000000000‑A5M8V:1:1114:14969:21955/1‑251 (MQ=60)
                                                                                                                                                                                                                  GAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAA                         >  M01186:129:000000000‑A5M8V:1:2105:23966:6009/1‑250 (MQ=60)
                                                                                                                                                                                                                     CTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATAATTTTCGTTTTCCGCCATTGAGCGATTCAACAAAAGCAATCGTTAAACCCA                     >  M01186:129:000000000‑A5M8V:1:1114:19115:17379/1‑251 (MQ=60)
                                                                                                                                                                                                                          AGGCAGCCCCGCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTGCGGTACTGACATAACCCTGCTGTTTAACC                                                                                                                                <  M01186:129:000000000‑A5M8V:1:1103:4669:8515/139‑1 (MQ=60)
                                                                                                                                                                                                                              cgcccgcCACCGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACC            <  M01186:129:000000000‑A5M8V:1:1111:27467:20703/244‑1 (MQ=60)
                                                                                                                                                                                                                                        CGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATTCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTG  <  M01186:129:000000000‑A5M8V:1:1111:25805:7340/251‑1 (MQ=60)
                                                                                                                                                                                                                                        CGCCATGATG‑‑GCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTG  <  M01186:129:000000000‑A5M8V:1:2103:25776:7106/251‑1 (MQ=60)
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                               
TTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATG‑‑GCCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTG  >  NC_000913/3560212‑3560693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: