Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F9 I0 R1
|
58 |
62.8 |
1514203 |
84.7% |
1282529 |
220.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,560,455:1 |
+G |
100% |
intergenic (‑2/+1) |
glpR ← / ← glpR |
pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,560,455 | 1 | . | G | 91.7%
| 135.9
/ 2.0
| 48 | intergenic (‑2/+1) | glpR/glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| Reads supporting (aligned to +/- strand): ref base . (1/3); new base G (35/9); total (36/12) |
| Fisher's exact test for biased strand distribution p-value = 4.32e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
CGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑C‑CA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCAC > NC_000913/3560234‑3560675
|
cGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACGGCCATG‑ATGG‑cgacgga > 1:687576/1‑222 (MQ=255)
tGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGGGGCCTTGCGATCGTGCCACGGCGTGTTACCCGAACTGGAAGGCAGGGCCGCACCGCCAAG‑ATGG‑CGCA‑GGacacg > 2:35198/1‑225 (MQ=255)
aaTGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGGTTTGCTCCGCCAGc > 2:171498/1‑229 (MQ=255)
tGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGTCGCGCCGCACCGCCATT‑GTGT‑CGCA‑GGATCAGGTTTTCCTCCGCCAGCt > 1:169504/1‑228 (MQ=255)
tGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCG‑GGACCGGGGTTTGCTCCGCCACCTc > 2:48094/1‑229 (MQ=255)
tGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCAACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAGGCCACCCCCGCACCGCCACGCGGGG‑C‑CA‑GGATCGGGTTTGGATCGGccgaccc > 2:576795/1‑224 (MQ=255)
tgtgATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTTGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGGGGTcgcg > 1:294946/1‑229 (MQ=255)
gcgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GAATCAGGTGTTGCTCCGCCAGCTCATTGAGGTCGCGGCGACTAGGCTCCg > 1:308254/1‑229 (MQ=255)
cgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCgg > 1:411124/1‑229 (MQ=255)
cgcTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCGGCCCATTCGGGCCCGGGCGAAGAGTcgggtgggtg > 2:296388/1‑220 (MQ=255)
aCCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCTTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGAc > 1:494273/1‑227 (MQ=255)
aCCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑CTGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACg > 1:53325/1‑228 (MQ=255)
tCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCCCATTGCGGTCGCGGCGAAAAGTCTGCGGGCTGACGGGGaaa > 1:133069/1‑228 (MQ=255)
gCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTTGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGACGAATATTCTGCGGGCTGACGGAGAAATGCTCTACCACCTCTTCGGTACTgcaata > 1:612373/1‑224 (MQ=255)
cGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGATTAGCCTGGGGGCTGACGGAGAAATGCCTTACCAACCCTTCGGAACTGACaaaa > 2:666942/1‑229 (MQ=255)
gcccATTGGGGGTTTCGCGCCGCCCGTTTGGGGGCGATGCCCTTTTTTTCTGCGGTTGGGGTGGCCTTGCGATCGGGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct < 1:48094/227‑1 (MQ=255)
aGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGAGGCGAATAGTCTGCGGGCTGACGGAGGAATGCTCTACCAGCCCTTCGGGACCGCCCTAACCctg > 1:454562/1‑229 (MQ=255)
ttGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCCTG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAGAAGGCTGCGGGCTGACGGAGAAATGCTCTCCAAGCCCTTCGTTACTTCCATAACCCTCCTCtt > 2:402232/1‑229 (MQ=255)
tt‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGCGGTCGCGGCGAATAGTCTGCGGGCTGACGGCGAAATGCCCTACCAGCTCTTCGGTACTGACCTAACCCTGCTGTTTAACCAg > 1:692303/1‑228 (MQ=255)
ggccccccctgtttGCGGGCGAGTGTCTTTTTTTCGTCGGTCTGGGTGGCCTTGCGTTCGTGCCACGGCGTGTAAACCGAACTGGAGGGCTGCCCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGtt < 1:151654/218‑1 (MQ=255)
ccGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCCTG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTTCGGGCTGGCGGGGAAATGCCCTCCCAGCCTTTCGGTATTACCATAACCCTGCTGTTTAACCAGTTCGat > 2:14684/1‑229 (MQ=255)
cGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGatg > 1:444610/1‑228 (MQ=255)
gccttttcgCGGGTGAGGCACTCTTTTGTGTGGGTCTGGGTGTCTTGGCGATCGTGCCTCGGCGTGTTAACCAATCTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGata < 1:666943/220‑1 (MQ=255)
tGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGtt > 1:646258/1‑229 (MQ=255)
ggCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGCCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGGACTGCCCTAACCCTGCTGTTTAACCCGTTCGTTAATACCGTTGTGa > 1:115188/1‑229 (MQ=255)
aTGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAACTGCTCTACCAGCTCTTCGGTCTTGACCTAACCCTGCTGTTTAACCCGTTCGTAAATACCGTGTTGCCGtt > 1:349447/1‑229 (MQ=255)
cttcGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct < 1:49442/180‑1 (MQ=255)
cttcGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct > 2:49442/1‑180 (MQ=255)
cGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGCAGGAAGCGCCCCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGGCAGCTCATTGAGGGCGCGGCGAATAGTCTGCGGGCTGCCGGAGAAATGCTCTACCAGCTCTTCGGAACTGATATAACCCTACTGTTTAACCAGTTCGCTACTACCGTTATTACGTTGTGTTTGTTTCTTTta > 2:5103/1‑229 (MQ=255)
cGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGGGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGCTAATACCGTTTTGACGTTTGGTTTGTTTCCtttt > 1:514192/1‑228 (MQ=255)
cGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGCCATAACCCTGCTGTTTAACCACTTCGATAATACCGTTGTGACGTGTGGTTTGTTTCAtttt > 2:632939/1‑228 (MQ=255)
cGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCTTTAATACCGTTGTTACGTTGTGTTTGTTTCATTta > 1:531430/1‑229 (MQ=255)
ggTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGGGCCGTTTTGTTTGTTTCATTTAAAAATcc > 2:259794/1‑229 (MQ=255)
cTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGCGGTCGCGGCGAATAGTCTGCGGGCTGTCGGAGAAATGCTCTACCAGCTCTTCGGTACTGACACAACCCTGCTTGTTAACCAGTTCGAAAATACCGTTGTGACGTGAGTTTTTTTTCTTTTAAAAATCCCTGGaa > 2:149646/1‑229 (MQ=255)
gTGCCACGGCGTGTTAACCGAACTGTAAAGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCCCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGGGAAATGCTCTACCCGCTCTTCGGTCCTGACCACACCCTGCTGCTTAACCAGTTCGTTACTACCGTTTGTACGTTTCATTTTTTTCATTTATAAATCCCGGGAATTAttttct > 2:438082/1‑228 (MQ=255)
gTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTCCTGACATAACCCTGCCGTTTAACCAGTTCGATAATACCGTTGTGGCGTTTTGTTGGTTTCTTTTTTAAATCCCTGGAATTAttttcg > 2:742513/1‑229 (MQ=255)
gTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTTTGACGTTGTGTTTGTTTCATTTATAATTCCCTGGAATTAttttcg > 1:548752/1‑229 (MQ=255)
gggggtgtTAACCGAACTGGAAGGCAGGGCCGCCCCGCCATG‑GTGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTAttttcgtttt < 1:287691/223‑1 (MQ=255)
gtTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGGGAACTGCTCTACCAGCTCTTCGGTACTGCCATAACCCTGCTGTTTAACCCGTTCGCTAATACCCGTGGTACGTTTCGTTTGTTTCATTTTTAAATCCCCGGAATTATTTTTGTTTTTGCGCAtt > 2:287691/1‑229 (MQ=255)
ttAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTg > 1:58940/1‑229 (MQ=255)
aCTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTTCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAt < 1:632940/228‑1 (MQ=255)
ggcgcccgacccgccgTG‑ATGG‑CGCA‑GGATCCGGTTTTGCTCCGCCAGCTCATTGAGGTCGCTGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAAACAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGc < 2:294946/219‑1 (MQ=255)
ggtgcggctccGCCATG‑ATGG‑CGCA‑GGATCAGGTTTGTCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGGCGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGcc < 1:414392/220‑1 (MQ=255)
ggcgcCGCCCCGGCAGG‑ATGG‑C‑GAGGGATCAGGTGTGGCTCCGACAGCTGCTTGAGGTAGCGGCGAATAGTCTGGGGGCTGACGGAGAAATGCTCTTCCAGCTCTTCGGTACGGACATAACCCTGCTGTTTAACCAGTTCGATAATCCCGTTGTGACGTTGTGTTTGTTTCAGTTAGAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGc < 2:129388/227‑1 (MQ=255)
gccccgcACCGCCATG‑ATGGCC‑CA‑GGATTCGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCa < 1:44750/226‑1 (MQ=255)
cgcccggACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCa < 1:171498/226‑1 (MQ=255)
cgccgcTCCGCCTTG‑GTGG‑C‑GACGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGcc < 2:58940/227‑1 (MQ=255)
cgccgcACCGCCATG‑ATGG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTAGTTTTCGCGCATTTAGCGAATCAACAAAAACCaa > 2:351697/1‑228 (MQ=255)
tg‑atgG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATGGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCCCGCATTGAGCGAATCAACAAAACACATCGCTAAACCCAc > 1:488369/1‑228 (MQ=255)
|
CGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑C‑CA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCAC > NC_000913/3560234‑3560675
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑C‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGT > NC_000913/3560214‑3560692
|
TACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCG > M01186:129:000000000‑A5M8V:1:2102:19516:2469/1‑251 (MQ=60)
catacagGTGTTAGCAACGTTGAAATTTTGGGTGACAATGCCCAAATTGCTGGTATTGAGCGGGGCGTGCGTTCCCGTTTCCGGCGTGGTGCCGATATCAATAAACAGCGTCGGGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTGCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGT < M01186:129:000000000‑A5M8V:1:2104:11237:4970/244‑1 (MQ=60)
tagtggttttggaggtgtgtgtgggttggggagtgtgccaaaatggcttgaggtggtagttgcggtgggcacctgctggtggttggcggcgatcgcgttaacccgcggggggcttTTGGGGATTTGCGCCGCCTCTTTGCGGGCGATGCGCTCTTTTTCCTCGGTCTGGGTGGCCTGGCGAGCGTGCCAGGGCGTGTTAACCGAAGTGGAAGGCAGCGCCGCCCCGCCATGATGG‑CGCAGGATCAGGTG < M01186:129:000000000‑A5M8V:1:2114:23706:15456/134‑1 (MQ=60)
CGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACGGCCATGATGG‑Cgacggaccaggttttgt > M01186:129:000000000‑A5M8V:1:2110:16968:20037/1‑233 (MQ=60)
tgttgggggtgataatgtgcaatgtggtgtgtgtgaggagggggggcgtgctcgtctgcggggtgctgcgattatgcataaacagggtggtgctattggggttttgctcggccttttgGCGGGCGATGCGCTTTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTTTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAG < M01186:129:000000000‑A5M8V:1:1107:19199:5506/132‑1 (MQ=60)
GTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGTCGCGCCGCACCGCCATTGTGT‑CGCAGGATCAGGTTTTCCTCCGCCAGCTCATTGAGGTCG > M01186:129:000000000‑A5M8V:1:1105:11822:18763/1‑250 (MQ=60)
cgcatggccattgtgctgtgtttgcgtggtggggtcgtacctgctgcagggttgctgcgtataccatacaccggggtggacgctTTGGGGATTTGCCGCGCCATTTTGCGGGCGATGCGCTTTTTTTCTGCGGTCGGGGTGGCCTTGCGATGGTGCCACGGCTTGTTAACCGAACGGGAAGGCGGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAAT < M01186:129:000000000‑A5M8V:1:1111:23493:24811/167‑1 (MQ=60)
GCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTTGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGGGGTCGCGGCGAATAGTCG > M01186:129:000000000‑A5M8V:1:1110:20381:4997/1‑251 (MQ=60)
GATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGAATCAGGTGTTGCTCCGCCAGCTCATTGAGGTCGCGGCGActaggctccgggctgccggga > M01186:129:000000000‑A5M8V:1:1110:7196:17740/1‑230 (MQ=60)
GATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCAGGATGG‑CGAAGGACGAGGTTTTGCTCCGCCGGGTCCTTGAGGTAGCGGCGACTAGTCTcggggctgcaggaa > M01186:129:000000000‑A5M8V:1:1111:3776:17428/1‑237 (MQ=60)
ATTGAGCAGTGCTTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGTGCCTTTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCTTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATGAGGGTTTGCTCCGCACGCCCATTGAGGCCGCGGCGAATAGTCTGCGGGGTGCCGGAGA > M01186:129:000000000‑A5M8V:1:2111:25018:23915/1‑251 (MQ=60)
ATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGGGA > M01186:129:000000000‑A5M8V:1:2102:20317:12453/1‑251 (MQ=60)
GAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGACCTGGCAGGCAGCGCCGTACCGCCATGATGG‑CGCAGGATAAGGTTTTCCTCCGCCAGCTCATTGAGGTCGCGGCGAAAAGCCTGCGGGCTGACGacgaaag > M01186:129:000000000‑A5M8V:1:1114:7991:12482/1‑244 (MQ=60)
gtgcgtgggtacccggtccgggtggtgtcccgatcgcataaactccggtgtggcttttgggtattggtcgcgccactgctgtggtgtatcgttctttgtcgtaggtcgGGGTGGCCTTGCGGTCGTGCCACGGCTTTTTAACCGACCTGGAAGTCCCCGCAGCACCGCCATGATGGAG‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTC < M01186:129:000000000‑A5M8V:1:2110:15456:28873/142‑1 (MQ=60)
GTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCTTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGGGAAATGCT > M01186:129:000000000‑A5M8V:1:2104:7474:18590/1‑249 (MQ=60)
GTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGCTGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTC > M01186:129:000000000‑A5M8V:1:1102:17781:13329/1‑250 (MQ=60)
atggcgtccggttctcgggggtggtcgaatatcgaaaacagggctgtgcccttgggggtttcgccCCGCCGCTTTGCGGGCGATGCGCTCTTTTTCTGCGGTTTGGTGGGCCTTGCGATCGTGCCCCGGGTTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACC < M01186:129:000000000‑A5M8V:1:2106:21521:5728/185‑1 (MQ=60)
GCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCCCATTGCGGTCGCGGCGAAAAGTCTGCGGGCTGACGGGGAAATGCTCTACCAC > M01186:129:000000000‑A5M8V:1:1104:10184:18101/1‑250 (MQ=60)
gtgggtcgagttgcgtgtaacgccggcggggcatttggggtttggccccggcctttggggggggatggccttttttgcctgggtcggggtggcttggggagcgggccagGGCGTGTTAACCGACTTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACA < M01186:129:000000000‑A5M8V:1:2110:13097:7490/141‑1 (MQ=60)
gcggatctctataacggggggcgggcgtttggggtttggccccgccctttggcggcgGATGCTCTCTTTTTCTTCGTTTGGGGGGGCCTTGCGATCGGCCCAGGGCGTGTTAACCGAACGGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCAGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCC < M01186:129:000000000‑A5M8V:1:1109:24329:10124/193‑1 (MQ=60)
ATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTTGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGACGAATATTCTGCGGGCTGACGGAGAAATGCTCTACCACCTCTTCGGTACTGCAATAACCCTGCGGTT > M01186:129:000000000‑A5M8V:1:2108:15039:6089/1‑251 (MQ=60)
TCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCCCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGATCTTCGGCACTGCACTAACCCTGCGGTTT > M01186:129:000000000‑A5M8V:1:2105:11505:9819/1‑251 (MQ=60)
tcggctccccctttggttcggggggctgggaggtgtgtataagaggcagGCGCTTTTTTTCTTCGGTCGGGGTGGCCTGGCGATCGTCCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACC < M01186:129:000000000‑A5M8V:1:1102:11746:11192/202‑1 (MQ=60)
taaacgggttggcccattgggggtttcgcgccgcccgtttggGGGCGATGCCCTTTTTTTCTGCGGTTGGGGTGGCCTTGCGATCGGGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACC < M01186:129:000000000‑A5M8V:1:1102:10760:10432/209‑1 (MQ=60)
AAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGAGGCGAATAGTCTGCGGGCTGACGGAGGAATGCTCTACCAGCCCTTCGGGACCGCCCTAACCCTGCTGTTTAACCA > M01186:129:000000000‑A5M8V:1:2103:5485:16479/1‑251 (MQ=60)
CCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGCGGTCGCGGCGAATAGTCTGCGGGCTGACGGCGAAATGCCCTACCAGCTCTTCGGTACTGACCTAACCCTGCTGTTTAACCAGTTCGGTAATAC > M01186:129:000000000‑A5M8V:1:2110:12799:24896/1‑250 (MQ=60)
ttgtggggttttcccccgcctttgtgggggtgatgcccttttttcctgtGGTCTGGGTGGCCTTGGGATCGTGCCAGGGCGTGTTAACCGAACTGGAGGGCGGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCGCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCG < M01186:129:000000000‑A5M8V:1:1111:13666:12161/202‑1 (MQ=60)
ctttgggtattggccccccctgtttgcgggcgagtgtcttTTTTTCGTCGGTCTGGGTGGCCTTGCGTTCGTGCCACGGCGTGTAAACCGAACTGGAGGGCTGCCCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCG < M01186:129:000000000‑A5M8V:1:1105:23646:8321/211‑1 (MQ=60)
GGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATGATACCGTTGTG > M01186:129:000000000‑A5M8V:1:2103:19859:11020/1‑251 (MQ=60)
ggttttgccccgccttttcgcgggtgaggcactcttttgtgtgggtctgggtgtcttgGCGATCGTGCCTCGGCGTGTTAACCAATCTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTG < M01186:129:000000000‑A5M8V:1:2109:17581:24799/192‑1 (MQ=60)
gtttggtgccgcccgtgTGCGGGCGATGCGCTTGTTTTCTGGGGTGTGGGGGGCCTTGCGAGCGTGCCACGGCGTGTTAACGGAACGGGAAGGCAGCGCCGAACCGCAATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGGCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA < M01186:129:000000000‑A5M8V:1:2101:6258:19364/233‑1 (MQ=60)
ttgccgccccttttggggggcATGCGCTCTTTTTCTTGGGTCGGGGTGGCCTTGCGATCGTGCCCCGGCGTGTTAACCGAACTGGAAGCCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTG < M01186:129:000000000‑A5M8V:1:2104:20420:15310/230‑1 (MQ=60)
CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTTTGACGTTGgt > M01186:129:000000000‑A5M8V:1:2109:12718:9295/1‑249 (MQ=60)
GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGCCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGGACTGCCCTAACCCTGCTGTTTAACCCGTTCGTTAATACCGTTGTGACGTTtgttttt > M01186:129:000000000‑A5M8V:1:1104:20595:7342/1‑244 (MQ=60)
cgttggcggggggtgcgttttttttctgcgtgctggcgggccgtgggacgtggccacggggtgttacccgacttggagggctggcgCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATATCCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTT < M01186:129:000000000‑A5M8V:1:1114:23548:17734/165‑1 (MQ=60)
CTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAACTGCTCTACCAGCTCTTCGGTCTTGACCTAACCCTGCTGTTTAACCCGTTCGTAAATACCGTGTTGCCGTTGTGTTTGTTTT > M01186:129:000000000‑A5M8V:1:1113:24965:16424/1‑251 (MQ=60)
ttgtggtcgtttttttgcggtgggggctgcctgccgtgtggggcaggggctgttacccgatctgaaagtCAGCGCCACACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAA < M01186:129:000000000‑A5M8V:1:2102:17154:26248/181‑1 (MQ=60)
CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGGGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGCTAATACCGTTTTGACGTTTGGTTTGTTTCCTTTTTAAAACCCTGG > M01186:129:000000000‑A5M8V:1:2105:10337:9121/1‑251 (MQ=60)
CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCTTTAATACCGTTGTTACGTTGTGTTTGTTTCATTTATAATTCCCTGG > M01186:129:000000000‑A5M8V:1:2105:8154:18749/1‑251 (MQ=60)
ttttttccgcggttggggtggccggggcactgtgccaggggGTGTTACCCGATCTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAA < M01186:129:000000000‑A5M8V:1:1110:19994:6984/210‑1 (MQ=60)
GCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTTTGACGTTGTGTTTGTTTCATTTATAATTCCCTGGAATTATTTTCGTTTTCGCCCAT > M01186:129:000000000‑A5M8V:1:2106:12306:7857/1‑251 (MQ=60)
agcaagggcctggggGTGTTAACCGAACTGGAAGGCAGGGCCGCCCCGCCATGGTGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAG < M01186:129:000000000‑A5M8V:1:1109:28332:19753/234‑1 (MQ=60)
GCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAAA > M01186:129:000000000‑A5M8V:1:1102:11277:16444/1‑251 (MQ=60)
GTGTTACACGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTTCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCC < M01186:129:000000000‑A5M8V:1:2108:15100:20359/250‑1 (MQ=60)
accgggagggcggtgcggctCCGCCATGATGG‑CGCAGGATCAGGTTTGTCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGGCGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACC < M01186:129:000000000‑A5M8V:1:2102:26474:14238/231‑1 (MQ=60)
actggaagggacgcccggACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCC < M01186:129:000000000‑A5M8V:1:1105:19305:20004/233‑1 (MQ=60)
acgggaagtgcgccCCGCACCGCCATGATGGCC‑CAGGATTCGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCC < M01186:129:000000000‑A5M8V:1:1102:22081:8375/237‑1 (MQ=60)
ACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGGCGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAAACCGGTTGTTTAACCAGTTCGCTAAAACCGGTGTGACGTTTGGTTTGTTTCATTTCTAAATACCTGGATGTATTTTGGTTTTCGCGACTTGGGCGAATCAACAAAAGCCAACGCTGAACC > M01186:129:000000000‑A5M8V:1:1107:5790:14329/1‑250 (MQ=60)
CCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATGGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCCCGCATTGAGCGAATCAACAAAACACATCGCTAAACCCACGGCTAACCCGG > M01186:129:000000000‑A5M8V:1:2104:8474:15260/1‑250 (MQ=60)
CCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCAGCGATGA > M01186:129:000000000‑A5M8V:1:1105:18545:19186/1‑251 (MQ=60)
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TACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑C‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGT > NC_000913/3560214‑3560692
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
