Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F28 I0 R1
|
51 |
55.9 |
1320120 |
86.3% |
1139263 |
218.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,560,455:1 |
+G |
100% |
intergenic (‑2/+1) |
glpR ← / ← glpR |
pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,560,455 | 1 | . | G | 90.9%
| 132.0
/ 3.1
| 44 | intergenic (‑2/+1) | glpR/glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| Reads supporting (aligned to +/- strand): ref base . (3/1); new base G (27/13); total (30/14) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
AGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGC‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGC > NC_000913/3560229‑3560660
|
aGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGcg > 1:484710/1‑227 (MQ=255)
cGTTGAGATTGTTGGAGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACGGCCATGATGGGC‑CAgg > 1:480044/1‑227 (MQ=255)
ttGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCCCACCGCCATGCT‑GGCGCAGGAt > 1:645334/1‑227 (MQ=255)
ttGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGAG‑CTCTTTTTCTCCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGGGTTAACCGAACTGGAGGGCAGCGCCGCACCGCCATAAG‑GGcgcgggat > 1:117386/1‑220 (MQ=255)
gttgGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGGG‑CAGGGTCAGGtttt > 1:328576/1‑227 (MQ=255)
tgGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCt > 1:617647/1‑228 (MQ=255)
gtgcgtgcGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTCACCGAACTGGAAGGCAGCGCCCCACCGCCATGATGGGC‑GCGGACCGGGCTTTTCTCCGCCAGACCATTGGGGTGCGGGCGAAAAGGCt > 2:327882/1‑228 (MQ=255)
tgcgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATAAGGTTTTGCTCAGCCAGCCCATTCCGGTCGCGGCGACTAGTccg > 1:582864/1‑226 (MQ=255)
tgcgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCAGGAT‑GGCGCAGGCTCAGGTTTTGGTCCGCCACCTAATTGAGGTGCCGGCGAAAAgccgg > 1:622009/1‑224 (MQ=255)
tgcgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCAAGCT‑GGCGCAGGAACAGGTTTTGCTCCGCCCGCCCCTTGAGGTCGGGGCGAAtgggacg > 2:42042/1‑222 (MQ=255)
cgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGCTCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGGCAATAGTCTGCg > 1:408469/1‑228 (MQ=255)
cTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCACCTCATGTAGGTCGCGGCGAAACGTCTGCGGGCTGACGgaga > 2:291208/1‑228 (MQ=255)
gtgCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGGGAAATGCTCTAcc > 1:62526/1‑228 (MQ=255)
gATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGCGAAATGCTCTACCAGCCCTTCgg > 1:576230/1‑227 (MQ=255)
gATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAAAAGCCTGCGGGCTGACGGAGAAATGCCCTACCAGCCCTTCgg > 1:162775/1‑227 (MQ=255)
aGCGTCGAGCCATTGGGAATTTGCTCCGCCATTTGGGGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCAACGGGGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACa < 1:389218/228‑1 (MQ=255)
cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATa > 1:548871/1‑228 (MQ=255)
cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCCCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACa > 1:59018/1‑226 (MQ=255)
cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTCCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGGTCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATCCCCTACCCCCCCTTCgtgccagaatta > 2:104273/1‑217 (MQ=255)
gTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGctc > 1:590983/1‑203 (MQ=255)
ggCCTTTGGGGTTTTCCCCGGCCCGTTTGCGGGCGATGCC‑CTCTTGTCCTGGGGTCGGGGTGGCCTTGCGATCGTGCCACGGCGTGTTACCCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct < 1:291208/227‑1 (MQ=255)
ggCCTTTGGGGATTTGCTCCGCCGTTTTGCGGGCGATGCG‑CTCTTTTTCTTGGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct < 1:511959/227‑1 (MQ=255)
aGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGCCGGGGAAATGCCCTACCAGCTCTTCGGTACTGACATAACCct > 1:227269/1‑228 (MQ=255)
ccATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGATCTACCAGCTCTTCGGACCTGCCATAACCctgc > 1:607051/1‑228 (MQ=255)
ttcccccGCCCTTTTGGGGGCGGTGCC‑CTTTTTTTCTTCGTGTGGGGGGGCCTGTCGATGGTCCCCGGGGGGTTTAACCGAACTGGAAGGCGGCCCCGCCCCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg < 2:601170/223‑1 (MQ=255)
gtcccggCCAGTTGGCGGGCG‑TGCGCCTCTTTTTGTACGGTCGGGGGGGCTTTGCGATCGTGCCACGGCGTGTAAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg < 1:104273/221‑1 (MQ=255)
gtccccGCCATTTTGGGGGGGATGCG‑TTCTTTTTCTCCGGTCTGGGTGGCTTTGCGATCGTGCCGCGGCGTGTTAACCGAACTGGAAGGCAGCCCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg < 1:619205/223‑1 (MQ=255)
gCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCCCGGCGAAAAGTCTGCGGGCTACCGGAGAAATGCTTTACCAGCTCTTCGGTAATGCCATAACCCTGCATTTAAAccctgt > 2:250359/1‑224 (MQ=255)
cTCCGCCTTTTTGCGGGCTCTGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCCCCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct < 1:250359/212‑1 (MQ=255)
ccACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGAGGGCTGACGGGGAAATGCTCTACCCGCACTTCGGTACTGACATAACCCTGCTGTTTACACCGTTCGgtaa > 1:535698/1‑228 (MQ=255)
tttttggggggCGATGCG‑CTTTTTTCCTGGGGGTGGGGGGGCCTTGCTGTGGGGCCCGGGGTTGTTACCCGACTTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGataa < 2:162775/219‑1 (MQ=255)
ggggcagtGCG‑CTTTTTTTCCGCGGGCGGGGTGGCCTTGCGACCGGGCCGCGGGGTTTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTtg < 1:157973/221‑1 (MQ=255)
cttcGGTTGGGGGGGCTTTGCGATCGGGCCATGGCGTGTTAACGGAACGGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTc < 1:494449/227‑1 (MQ=255)
gtgtGGGGGGCTTTGCGTTCGTGCCACGGCGTGTTAACCAAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCGCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTtat < 1:327882/225‑1 (MQ=255)
gTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGCGGTCGCGGCGAATAGTCTGCGGGCTGACGGGGAAATGCTCTACCTGCTCTTCGGTATTGACATAACCCTGCGGTTTAACCCATCCGATAATACCCCTTTGAAGTTTTGTTTGTTTCTTTtat > 2:596459/1‑228 (MQ=255)
gTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTAACGACATAACCCTGCTGTTTACCCAGTTCg > 1:262693/1‑192 (MQ=255)
tcggggTGGCCTTGCGACCGTGACACGGCTTGTTAACCGAACTGGAAGGCAGCGCCGAACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTtata < 1:87591/225‑1 (MQ=255)
ggTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGGTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGc > 1:509161/1‑121 (MQ=255)
ctgtGCGACCGTGCCGCGGGTTGTTAACCGACCTGGAAGGCAGCCTCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTTGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTgg < 2:442525/225‑1 (MQ=255)
cTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGTTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGGGTTTGTTTCATTTTTAAATCCCTGGa > 1:466325/1‑228 (MQ=255)
cGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACTCTGCGTGTTAACCCGTCCGATAATACCGGTGGAACCTTGTGTTGGTTTCATTTATAAATCCCTGGAatta > 2:554889/1‑228 (MQ=255)
tgtTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACCTAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTTTTTTTGTTTTTCCGCa > 2:307346/1‑228 (MQ=255)
aCTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCGGGATCAGGTTTTGCTCCGCAAGCTCATTGATGTCGCGGCGAACAGTCTGCGGACTGACGGAGAAATGCTCTACGAGCTCTTCGGTACTGACATAACCCTACGGTTTAACCATTTCGATAATACCGTTTGTACGTTGTGTTTGGTTCATTTATAAAACCCTGGAAATTTTTTTGTTTTTGCGACTTTAGAGAAt > 2:430983/1‑228 (MQ=255)
aCTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGACTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGATTGTTTCATTTATAAATCCCTGGAATTAGTTTCGTTTTCGCGCATTGTGCGAAt > 1:358814/1‑228 (MQ=255)
cAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACaaaa > 2:340412/1‑227 (MQ=255)
gcccccgcTCCCCCATGGTGGGG‑CAGGATCGGGTTTTGCTCCGCCAGCTCATTGAGGTCGGGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGc < 2:227269/224‑1 (MQ=255)
|
AGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCG‑CTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGC‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGC > NC_000913/3560229‑3560660
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGC‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGT > NC_000913/3560218‑3560694
|
ATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTT > M01186:129:000000000‑A5M8V:1:2107:17054:2137/1‑251 (MQ=60)
CGTGTTAGCAACGTTGAGATTGTTGGAGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACGGCCATGATGGGC‑CAGGATCAGGTTTTGC > M01186:129:000000000‑A5M8V:1:2106:26670:22144/1‑250 (MQ=60)
ttattacaacggtgggtattgtggagctaaatggcaaatgtttggtcattaagcgttgtttgccagccgcgttccggcgtggggcgatttccgtaaacaggctccggccctTTGGGAATTT‑GTTCCGCCACTTTGCGGGGGATGCGCCCTTTTTTATCGGTCTGGGTGGCCGTCCTAACGTGCCACGGCGTGTTAACCGAACTGGAGTCAAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTC < M01186:129:000000000‑A5M8V:1:2107:20884:28042/140‑1 (MQ=59)
GTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGGG‑CAGGATCAGGTTTTGCT > M01186:129:000000000‑A5M8V:1:1101:23511:13632/1‑250 (MQ=60)
GTGTTAGCAACGTTGAGATTGGTGGGGAAAAGGCGAAATTTGCGGTGATGGAGAGGTGCGTGGGCTCCCGTTTCCGGCGGGGGCGCGATAGCGATAAACCGCGTCGACCTATTGGGGATTT‑GCTCCGACACTTTGCGGGCGATGCGCTCGTTTTCTTCGGTCTGGGTGGCCTTGCGAGCGGGCCACGGCGTGTTATCCGAACTGGAAGGCAGCGCGGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCT < M01186:129:000000000‑A5M8V:1:1109:6243:11484/250‑1 (MQ=60)
TGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCCCACCGCCATGCT‑GGCGCAGGATAAGGTTTTcttc > M01186:129:000000000‑A5M8V:1:2114:25161:7369/1‑246 (MQ=60)
TGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGAGCTCTTTTTCTCCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGGGTTAACCGAACTGGAGGGCAGCGCCGCACCGCCATAAG‑GGCGCGGGATCAGGTTTTGCTC > M01186:129:000000000‑A5M8V:1:1105:5789:11831/1‑250 (MQ=60)
ACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGGG‑CAGGGTCAGGTTTTGCTCCGCCAGCT > M01186:129:000000000‑A5M8V:1:2101:15976:7044/1‑250 (MQ=60)
tgtagttgttttggtgcaagcgcgaaatttgctgtgttggcgcttgggtggcgctaccgttcgcggcgtggtgccgattgggaaaaccagcgtcggccttTTGGGGTTTT‑GCCCCGCCATTTTGCGGGTGATGCGCTTTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCGCGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCAT < M01186:129:000000000‑A5M8V:1:2114:20892:12016/151‑1 (MQ=60)
GTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCAT > M01186:129:000000000‑A5M8V:1:2112:16057:16964/1‑251 (MQ=60)
aattgttggtatcgaccatggcggcctctacggtttgcggggtggtgcgattatcgatacacatgGTCGATCCATTGGGGTTTT‑GCTCCGCCACTTTGCGGGCTGTGCGCTCTTTTTCTTCGGTCGGGGTGGCCTTGCGATCGTGCCACGGCTTGTTAACCGAACTGGAAGGCAGCGCCCCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGG < M01186:129:000000000‑A5M8V:1:2101:6331:17703/186‑1 (MQ=60)
atggtggtgttgcgactgggcggggcctaccgttcccggggggggccactatactataaacggcgcgggccctttgggttttggcccccCCACTTTGCGGGCTATGCGCTCTTTTTCTTCGGTCGGGGTGGCTTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC < M01186:129:000000000‑A5M8V:1:2101:19891:24816/162‑1 (MQ=60)
TGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATAAGGTTTTGCTCAGCCAGCCCATTCCGGTCGCGGCGACTAGTCCGCGGGCgatcgga > M01186:129:000000000‑A5M8V:1:2111:19657:1984/1‑244 (MQ=60)
TGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCAGGAT‑GGCGCAGGCTCAGGTTTTGGTCCGCCACCTAATTGAGGTGCCGGCGAAAAGCCGGCGGGCTGACGGA > M01186:129:000000000‑A5M8V:1:2112:5284:21387/1‑251 (MQ=60)
ATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGCTCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGGCAATAGTCTGCGGGCTGACGGGGA > M01186:129:000000000‑A5M8V:1:2104:7457:8116/1‑251 (MQ=60)
gctgcggggggggggtaccgctcccggcggggtcgcggaacgtataaaagagctcggcacttgtgggttttgccccgccagtttgcgggcgttgcgttctgtatagtcgggctgggtgccttaggtatcgtgaagcggtgtgttaaccaaacgggaggggagagcaGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAA < M01186:129:000000000‑A5M8V:1:1104:9414:7351/84‑1 (MQ=60)
ggccccgcccgttgcgggcgtggtgccgatttgataaaccagcgcgGAGCCTTTGGGGTTTT‑GCCCCGCCACTTTGCGGGCGATGCGCTTTTTTTCTTCGGTCGGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACC < M01186:129:000000000‑A5M8V:1:1103:25585:11950/204‑1 (MQ=60)
CTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGGGAAATGCTCTACCAGCCCTTCGGTA > M01186:129:000000000‑A5M8V:1:1103:10368:10882/1‑251 (MQ=60)
taggggtggcgtgcccgatgtcataacacggtccgaccttttgggtattcgccccggctgttggcggggggtgccCTCTTTTTCGTGGGTCGGGGTGGCCTTGCGATCGTGCCACGGCGTTTTAACCGAACTGGAAGGCAGGGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTAC < M01186:129:000000000‑A5M8V:1:1114:17465:22573/176‑1 (MQ=60)
GTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGCGAAATGCTCTACCAGCCCTTCGGTACTGACATAAC > M01186:129:000000000‑A5M8V:1:2110:11076:19673/1‑250 (MQ=60)
GTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAAAAGCCTGCGGGCTGACGGAGAAATGCCCTACCAGCCCTTCGGGACTGACTTAAC > M01186:129:000000000‑A5M8V:1:1107:20896:5274/1‑250 (MQ=60)
tgctgcttccgataaacggcttgcgccgtttgggtgtggctccggcactttggcggcaggggcgctttttttctgcgggcgggtgtgccggtcgttcgcgccagggtggGTTAACCGAACGGGAAGTCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACC < M01186:129:000000000‑A5M8V:1:2112:22683:8601/141‑1 (MQ=60)
GATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACGGCCATGAT‑GGCGCAGGGTCAGGTTTTGTTACGCCAGCTCATTGAGGTCGCGTCGAATAGTGTGCGGGCTGAAGGAGAAATGCTCTACCAGCTCTTCGGaactgcaagcaacctgcg > M01186:129:000000000‑A5M8V:1:1109:4060:13946/1‑233 (MQ=60)
attgcgaaaacCAGCGTCGAGCCATTGGGAATTT‑GCTCCGCCATTTGGGGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCAACGGGGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTG < M01186:129:000000000‑A5M8V:1:2103:26565:13727/240‑1 (MQ=60)
TCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTT > M01186:129:000000000‑A5M8V:1:2109:24705:16786/1‑251 (MQ=60)
TCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCCCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCctgccc > M01186:129:000000000‑A5M8V:1:1103:22038:8039/1‑243 (MQ=60)
CGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTC > M01186:129:000000000‑A5M8V:1:2111:13962:12519/1‑226 (MQ=60)
aaaccgcggccgggcctTTGGGGATTT‑GCTCCGCCGTTTTGCGGGCGATGCGCTCTTTTTCTTGGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACC < M01186:129:000000000‑A5M8V:1:2108:15112:6377/234‑1 (MQ=60)
aaaccgggttcgggcctttggggttttccccggcccgTTTGCGGGCGATGCCCTCTTGTCCTGGGGTCGGGGTGGCCTTGCGATCGTGCCACGGCGTGTTACCCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACC < M01186:129:000000000‑A5M8V:1:1112:19772:20753/214‑1 (MQ=60)
aaaccccgttcagccctttggggcttggccccgccacgtgggggggGATGCGCTTTTTTTCTTCGGTCGGGGTGGCCTTGCGATCGTCCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACC < M01186:129:000000000‑A5M8V:1:2104:16706:13669/205‑1 (MQ=60)
AAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGCCGGGGAAATGCCCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCA > M01186:129:000000000‑A5M8V:1:1109:25053:20173/1‑251 (MQ=60)
ACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGATCTACCAGCTCTTCGGACCTGCCATAACCCTGCTGTTTAACCAGT > M01186:129:000000000‑A5M8V:1:2112:23186:6037/1‑251 (MQ=60)
tggcgcgttgggtcttcgcgCCGCCACGTTGCGGGCGCCGCGCTCGTTATCTTGGGTGTGGGGGGACTTGCGATGGTGCCAGGGCGTGTTAACCGACGTGGAAGGCCGCGGGGCACCGCCGTGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTTCCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAA < M01186:129:000000000‑A5M8V:1:2113:6700:12879/231‑1 (MQ=60)
tcgttgggagttgtccCCGCCATTTTGGGGGGGATGCGTTCTTTTTCTCCGGTCTGGGTGGCTTTGCGATCGTGCCGCGGCGTGTTAACCGAACTGGAAGGCAGCCCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATAC < M01186:129:000000000‑A5M8V:1:2112:13066:18518/234‑1 (MQ=60)
cttttggggtttgtcccggccagttggcgggcgtgcgcctctttttgtacggtcgggggggctTTGCGATCGTGCCACGGCGTGTAAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATAC < M01186:129:000000000‑A5M8V:1:1104:27076:22668/187‑1 (MQ=60)
TTGGGGGTTTCGCTCCGCCTTTTTGCGGGCTCTGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCCCCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACC < M01186:129:000000000‑A5M8V:1:1110:15075:20082/235‑1 (MQ=60)
GATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGAGGGCTGACGGGGAAATGCTCTACCCGCACTTCGGTACTGACATAACCCTGCTGTTTAcaccgttcggtaataccgtttgtcg > M01186:129:000000000‑A5M8V:1:2109:16325:4272/1‑226 (MQ=60)
tccccctcttggggggcagtgcgctttttttccgcgggcgGGGTGGCCTTGCGACCGGGCCGCGGGGTTTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGT < M01186:129:000000000‑A5M8V:1:1106:16231:23337/211‑1 (MQ=60)
tggcgTCTTTTTCTTCGGTTGGGGGGGCTTTGCGATCGGGCCATGGCGTGTTAACGGAACGGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATC < M01186:129:000000000‑A5M8V:1:2107:22567:13087/245‑1 (MQ=60)
CCTTTTTCTCCGGTGTGGGGGGCTTTGCGTTCGTGCCACGGCGTGTTAACCAAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCGCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGA < M01186:129:000000000‑A5M8V:1:2101:25458:6366/251‑1 (MQ=60)
ttttttcgtcggactgggggacatgggcaccggcccctgggctgttacacaacccggaagcccgccacgccCCGCCATGAT‑GGCGCAGGATCAGGTTTTACTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGACTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAA < M01186:129:000000000‑A5M8V:1:1107:23499:25905/180‑1 (MQ=60)
TTTTTTCTTCGGTCGGGGTGGCCTTGCGACCGTGACACGGCTTGTTAACCGAACTGGAAGGCAGCGCCGAACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAA < M01186:129:000000000‑A5M8V:1:1104:28095:9518/251‑1 (MQ=60)
CTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTAACGACATAACCCTGCTGTTTACCCAGTTCGATAATACCGTTG > M01186:129:000000000‑A5M8V:1:1111:22764:11192/1‑215 (MQ=60)
TCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGGTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAG > M01186:129:000000000‑A5M8V:1:2107:12040:27221/1‑144 (MQ=60)
GTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGTTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGGGTTTGTTTCATTTTTAAATCCCTGGAATTATTTTCGTT > M01186:129:000000000‑A5M8V:1:2106:10148:11229/1‑251 (MQ=60)
GTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGACTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGATTGTTTCATTTATAAATCCCTGGAATTAGTTTCGTTTTCGCGCATTGTGCGAATCAACAAAAGCCA > M01186:129:000000000‑A5M8V:1:2102:7460:10414/1‑251 (MQ=60)
GCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCTTTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGT > M01186:129:000000000‑A5M8V:1:2103:10237:11865/1‑251 (MQ=60)
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ATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTT‑GCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GGC‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGT > NC_000913/3560218‑3560694
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
