Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F2 I0 R1
|
193 |
6708.0 |
8620653 |
98.5% |
8491343 |
136.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,604,564 |
G→T |
15.5% |
intergenic (+80/‑151) |
lpxC → / → secM |
UDP‑3‑O‑acyl‑N‑acetylglucosamine deacetylase/secA translation cis‑regulator SecM |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,604,564 | 0 | G | T | 15.5%
| 218.3
/ 4.7
| 105 | intergenic (+80/‑151) | lpxC/secM | UDP‑3‑O‑acyl‑N‑acetylglucosamine deacetylase/secA translation cis‑regulator SecM |
| Reads supporting (aligned to +/- strand): ref base G (9/76); new base T (18/2); total (27/78) |
| Fisher's exact test for biased strand distribution p-value = 9.03e-12 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 111 total aligned reads displayed.
TTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATACGATCGGGA > NZ_CP022686/3604425‑3604704
|
ttCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTg < 1:84167/140‑1 (MQ=255)
ccAGGCCGACGCTTAACTGCCTTGGGCCTTCAACGCGCCTTCACCCGTACTGTCATAACTACATTTATTCTGTCGAATAAAATTCGACTGGCAAATCTGGCACTCTGTACGGCCTGGTTAACCAGTCG‑‑T‑TTTTTTTTGat < 2:266479/140‑2 (MQ=255)
ccAGGACGAAGCAGTACTGCCGTTGGGCTTCAAAGCGACTTCAGCCGTACTGTCATAACGACATTTATACTGTCTTATAAAATTCGACTTGCAAATCTGGCACTCTCTCCGTCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTTaa < 3:317784/140‑1 (MQ=255)
cgacgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTtat < 4:498126/140‑1 (MQ=255)
cgacgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACGCTCGCCGGCCAGGGGAACCAGTCG‑‑T‑GTTTTttttatttttat > 7:778111/1‑140 (MQ=255)
gacgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTtata < 6:541046/140‑1 (MQ=255)
gacgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑GTTTTTTTTTAttttttt > 3:280443/1‑137 (MQ=255)
gacgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑GTGTTTTTGTATATtaat > 4:643940/1‑138 (MQ=255)
acgCAGAACTGCCGTTGGCCTTCAAAGCGACTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑GGGTTTTTGtttttttttt > 5:904737/1‑136 (MQ=255)
cgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TGTTTTTTTTAtttttttat > 6:247417/1‑135 (MQ=255)
cgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑GTTTTTTTTTAtttttttat > 4:907845/1‑135 (MQ=255)
cgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑GTTTTTTTTTAtttttttat > 4:309391/1‑135 (MQ=255)
cgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑GTGTTTTTTTAtttttttat > 3:744560/1‑135 (MQ=255)
cgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑GGTTTTTTGTATTTTATaat > 3:349262/1‑139 (MQ=255)
cgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTAATTGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATATGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTtttattttattat > 6:854362/1‑137 (MQ=255)
cAGAACTTCAGATGGTCTTCAAAGCGCCTTCAGCCGTACTGGCATAAAGACATTTATACTGACTTTTAAAATTCGAATGGCAATTCTGGCACTCTCTCCGGCAAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAagag < 6:772194/140‑1 (MQ=255)
cAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAagag < 6:759144/140‑1 (MQ=255)
cAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAagag < 1:151072/140‑1 (MQ=255)
cAGAACTGCCGTTGGCCTACAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAagag < 7:556335/140‑1 (MQ=255)
gAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTGTTGAATTTTTTaatttgg > 4:422194/1‑135 (MQ=255)
ccGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑GTTTTTTTGAATTTTTTATAAACTA‑Taaaa > 6:699857/1‑140 (MQ=255)
ccGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑GTGTTTTTTTTTTTTTTTAGAGCTA‑Taaaa > 2:963783/1‑140 (MQ=255)
ccGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑GGTTTTTTTTAATTTATATTAACAA‑Taaaa > 3:895477/1‑140 (MQ=255)
ttGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAAc < 3:571420/140‑1 (MQ=255)
ggCCTTCAAATCGACTTCAGCCGTACTGGCATAACGACATTTATACTGTAGTATAAAATTCTACTGGCAAATATGGGACTCACTCCGGACAGGTGAACCAGTCG‑‑T‑TTTTTTTTTATTTTTATAAAATATa‑aaaaaaaact > 6:449181/1‑137 (MQ=255)
ggCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑TGTTTTTTTTTAATTTT‑TAAATTCAA‑TAAAAAAccc > 3:124313/1‑138 (MQ=255)
ggCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑GTTTTTTTTTATTTTATTATATCTA‑Taaaaaaaaa > 2:47148/1‑137 (MQ=255)
ggCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑GGTTTTTTGTATTTTATTATTGGTT‑Taaaaaaacg > 4:933230/1‑137 (MQ=255)
ggCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑G‑TTTTTTTTTAATTTTATAAATTCTT‑TAAAAAACgg > 8:456804/1‑140 (MQ=255)
tCAAAGCGCCTTCAGCCGTACTGGAATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAAGCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGa < 5:576875/140‑1 (MQ=255)
cAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGaa < 7:135801/140‑1 (MQ=255)
cAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGaa < 8:815754/140‑1 (MQ=255)
aaaGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑‑‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACg < 3:652293/140‑1 (MQ=255)
aaGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACg < 5:33159/140‑1 (MQ=255)
ccTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTAG‑‑T‑CTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGtt < 5:244229/140‑1 (MQ=255)
cGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGTCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAg < 1:589483/140‑1 (MQ=255)
cGTAATGGCATAACGACATTTATACTTTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAg < 7:199733/140‑1 (MQ=255)
tACTGGCATAACGACATTTATACTTTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCa < 6:799089/140‑1 (MQ=255)
tACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑GTTTTTTTTAATTTTATTATAGCAT‑TAAAAAAAAGTGCGTACGCGGGTTTAtttataa > 2:653928/1‑135 (MQ=255)
tACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑GTTTTTTTTAATTTTATTAGAAATA‑TAAAAAACCGGGGTAAAGCTGTTTTCTTAAACa > 4:826169/1‑140 (MQ=255)
aCTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGaa > 7:58807/1‑92 (MQ=255)
aCTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGaa < 8:58807/92‑1 (MQ=255)
tGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACtt < 4:776415/140‑1 (MQ=255)
aTAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑GTTTTTTTTAATTTTTTAATAAGGA‑TAAAAAAACGTGCGAACCCGGGTTTGTTAATCACgtttta > 6:241020/1‑138 (MQ=255)
tAACTACATTTCTACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGGCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACg < 6:121288/140‑1 (MQ=255)
tAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACg < 8:805741/140‑1 (MQ=255)
tAACGACATTTATACTGTAGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGTTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTAct < 2:730968/140‑2 (MQ=255)
actaCATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGca < 2:789616/137‑1 (MQ=255)
aCGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGca < 3:918766/140‑1 (MQ=255)
aCGACATTTATACTGGCGTATAAAATTCGACTGGCAAATCTGGCACGCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGca < 5:327789/140‑1 (MQ=255)
cGACATTTATACTGTCGTATAAACTTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGTACGCTGTTTTCTTAAGCACTTTTACGcac < 1:504244/140‑1 (MQ=255)
cGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGcac < 1:504243/140‑1 (MQ=255)
cGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGcac < 7:878082/140‑1 (MQ=255)
cGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGcac < 7:376286/140‑1 (MQ=255)
cATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAAc < 3:365598/140‑1 (MQ=255)
ataCTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATc < 1:809798/140‑1 (MQ=255)
ataCTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATc < 8:654023/140‑1 (MQ=255)
aCTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCtt < 1:47148/140‑1 (MQ=255)
tCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAGCCAGTCG‑‑T‑GGTTTTTTGTATTTTTTATTGGCGATTAAAAAACGGGGGGACCGGGGTTTGGTT‑AGCCCTTTTACGGACACCTGATCTTAAtt > 4:786647/1‑140 (MQ=255)
tCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑GTGTTTTTTTTTTGTATATGAGCAA‑TAAAAAACGGTGCGGGCGCGGGTTTGTTTAACAGTTTTTCGGACATCTAAAGTTCAtt > 4:608535/1‑140 (MQ=255)
tCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑GGTTTTTTTTTTTTTTTTATTGGGA‑TTAAAAACGGTGGGGACGCGGGTTTGTTTTGACCATTTTAGCACAACTTTTCttaagt > 2:21471/1‑136 (MQ=255)
ttataAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCg < 8:88313/139‑1 (MQ=255)
gTATAAACTTCGACTGGCAAATCTGTCACTCTCTCCGGCGATGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCg < 3:839910/140‑1 (MQ=255)
gTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAACAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCg < 6:637142/140‑1 (MQ=255)
tataAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTT‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTc < 7:442472/140‑1 (MQ=255)
taAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑GTTTTTTTGTATTTTTTATTAGCGA‑TAAAAAAAGGTGGGGACGCGGTTTTGTTAAGCAAATTTTAGCACAACGTATATTCATTAGTgg > 4:52804/1‑139 (MQ=255)
aTTCGACTGGCAACTCTGGCACTCGCTCCGGACAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACTACTTATCTTCATTCGTGCtgtg < 5:605190/140‑1 (MQ=255)
aTTCGACTGGCAAATCTGGCTCTCTCTACGGCGAGGTGAAGCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCtgtg < 7:221706/140‑1 (MQ=255)
aTTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCtgtg < 7:990560/140‑1 (MQ=255)
aTTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCtgtg < 5:363454/140‑1 (MQ=255)
aTTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGAGCtgtg < 7:954593/140‑1 (MQ=255)
aTTCGACTGGCAAATCTGGCACTCTATCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCtgtg < 5:895294/140‑1 (MQ=255)
cagggCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACtt < 7:564513/137‑1 (MQ=255)
gtGGCAAATCTGGAACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTc < 8:711667/139‑1 (MQ=255)
cTGGCAAATCTGGCACTCTCTGCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTc < 1:629760/140‑1 (MQ=255)
aaTCTGGCACGCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGAGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCtt < 8:796938/140‑1 (MQ=255)
tCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTa < 8:200424/140‑1 (MQ=255)
tCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTa < 7:874611/140‑1 (MQ=255)
tCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTa < 2:977870/140‑1 (MQ=255)
cACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTGTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGAt < 7:793636/140‑1 (MQ=255)
tcCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGAttt < 2:1024534/140‑1 (MQ=255)
ccGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTtg < 6:341529/140‑1 (MQ=255)
ccATGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTC‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTgcg < 3:82493/140‑1 (MQ=255)
ccAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTgcg < 4:159980/140‑1 (MQ=255)
ccAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTATTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTgcg < 2:422021/140‑1 (MQ=255)
ccAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGATA‑TCAAAATCGGTGCGAACGCGGTTTTCTTAATCACTATTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTgcg < 7:547285/140‑1 (MQ=255)
ccAGGGGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTgcg < 8:659159/140‑1 (MQ=255)
ttaaCCAGTCG‑‑T‑TTTTTTTTGAATTTTTTAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCTaaa < 6:408526/138‑1 (MQ=255)
gAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCTAAAt < 2:442263/140‑1 (MQ=255)
aaCCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCTAAATa < 6:904737/140‑1 (MQ=255)
cG‑‑T‑TTTTTTTTTAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACTCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCCTTCGTGCTGTTGACTTCAGGCTTTAATTATAAGATTTGTGAGCTAAATACGTTTGa < 4:89775/140‑1 (MQ=255)
g‑‑T‑TTTTTTTTGAATTTTATAAGTGCTA‑TATAAAACGGGGCGAAAGCTGTTTTCTTAAGCACTTTTACGCACATCTTATCTTCATTGGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGac < 8:321558/140‑2 (MQ=255)
g‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGaa < 1:356348/140‑1 (MQ=255)
t‑ttttttttGAATTTTATAAGAGCTA‑TAAAATACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAAt < 8:627362/140‑1 (MQ=255)
t‑ttttttttGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAAt < 4:124313/140‑1 (MQ=255)
ttttttGAATTTTATAAGATCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATACg < 6:309274/140‑1 (MQ=255)
ttttGATTTTTATAAGAGCTA‑TTAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCATGCTTTAATGATAAGATTTGTGCGCTTAATACGTTTGAATACGAt < 3:847064/140‑1 (MQ=255)
ttttGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATACGAt < 1:553274/140‑1 (MQ=255)
gAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGGTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCTAAATAAGTTTGAATACGTTCggg > 4:1039248/1‑140 (MQ=255)
gAATTTTATAAGAGCTA‑T‑AAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATACGATCGGGa < 5:933371/140‑1 (MQ=255)
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TTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑T‑TTTTTTTTGAATTTTATAAGAGCTA‑TAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATACGATCGGGA > NZ_CP022686/3604425‑3604704
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
