Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F13 I0 R1
|
235 |
6960.4 |
9135780 |
98.4% |
8989607 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,734,380 |
T→G |
19.8% |
L229R (CTC→CGC) |
yafD → |
endonuclease/exonuclease/phosphatase family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,734,380 | 0 | T | G | 19.8%
| 255.0
/ 17.6
| 175 | L229R (CTC→CGC) | yafD | endonuclease/exonuclease/phosphatase family protein |
| Reads supporting (aligned to +/- strand): ref base T (17/118); new base G (33/5); total (52/123) |
| Fisher's exact test for biased strand distribution p-value = 8.28e-18 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 178 total aligned reads displayed.
GGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCCACAGGG > NZ_CP022686/3734241‑3734518
|
ggCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCt < 6:697932/140‑1 (MQ=255)
cGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTGGGGCCTTATGGCGCCCGCGCGaa > 2:789801/1‑139 (MQ=255)
cGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGGCGGCCGCTCGAt > 2:320350/1‑140 (MQ=255)
cGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCCGGGGGATTGCCGCCCCCTCGaa > 1:1086296/1‑139 (MQ=255)
ggTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGa < 4:476111/138‑1 (MQ=255)
aTGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGCCGCCCGCTCGAATTTGtttt > 2:261609/1‑140 (MQ=255)
aTGGCGGGAGATGTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGtttt < 8:229127/140‑1 (MQ=255)
cGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGTTTGGCCGCCCGCTCGttttttttttgtga > 6:158789/1‑136 (MQ=255)
gggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTGGGGCGGGGGGGCGCCCCCGGGAGTTTTTTTTCttac > 7:651022/1‑137 (MQ=255)
gggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTa < 3:158695/138‑1 (MQ=255)
gggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTTGCCCCCCGCTCGATATTTTTTTCttca > 1:937833/1‑137 (MQ=255)
gggAGATTTCAATGCCTCGAGCGGTAGAAGTATGAACGCGTTATATGGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTTCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCGCGCTCGATTTTGTTTTCTAcc < 1:888265/140‑1 (MQ=255)
ggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCg < 8:976586/140‑1 (MQ=255)
ggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCg < 7:588977/140‑1 (MQ=255)
ggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCg < 7:316289/140‑1 (MQ=255)
agaTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCg < 3:870605/138‑1 (MQ=255)
agaTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCg < 3:442696/138‑1 (MQ=255)
gaTTTCAATGCCTGGGGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACGGATGCTCAGCGCCGGCGGGCGGGTGGGCCCCCGCGAGTTTTTTTTTTGTAcagg > 3:528593/1‑135 (MQ=255)
aTTTCAATGCCTGGAGCCTTAGAAGGATGAACGCGTTATATCGCATTGCGCGGGTAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGt < 8:460996/140‑1 (MQ=255)
aTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCTGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTg < 4:1014825/138‑1 (MQ=255)
aaTGCCTGGAGCCGTAGAAGGATGATCGCGTTATATCGCTTTGAGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGaa < 8:189709/140‑1 (MQ=255)
aaTGCCTGGAGCCGTAGAAGGAAGATCGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGGCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGaa < 8:493026/140‑1 (MQ=255)
tGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTGGGGGGGTTGGGCGCCCGGGCGATTTTGTTTTTTTCCGTGGTCTGGACg > 6:729646/1‑140 (MQ=255)
cgCCGTAGAAGGCTGATCGCGTTATATCGCTTTGAGCGGGAAATGTCGCTGCGCCAGGAGCGTTTTACTGATGATCAGCTCCGTCGGGCGTTTGGCCGCCCGAGCGATTTAGTTTTCTACAGTGGTCTGAACGTCAGCGa < 6:658272/139‑1 (MQ=255)
agacGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 1:873266/137‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 5:1063929/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 5:289487/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 5:324189/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 5:36479/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 7:739350/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 2:1051356/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 1:810036/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 8:332865/140‑1 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGGTGGCCGCCCCGTAGATTTTTTTTTTATACGTGGGATGTCCGTCAGCGGAGcag > 5:388100/1‑138 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGc < 4:532695/138‑1 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAAGGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCtt < 7:116618/140‑1 (MQ=255)
tAGAAGGATGAACGAGTTAAATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTTATGAACAGCGCCGTCGGGCGATTTGACCCCCGCGCGATTTTGTTTTCAAACGTGGTGAGAACGACCGCAAAgaag > 6:473772/1‑137 (MQ=255)
aGAAGTATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTATTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGACCGTCAGCGAAGCt < 4:49004/138‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGTTGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTg < 3:464019/138‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTa < 1:512084/140‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTa < 1:38019/140‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGCCGGCCGGGGGCGTTTGTTTTATACCGTGGTGGGAACCTCAGCGGAGCTTgtgtt > 1:641887/1‑139 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCAAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGGCGCCCGCGAGAGTTTTTTTTTTAAAGGGGGGTGAACGACAGCGAAGCtggatta > 1:628780/1‑134 (MQ=255)
gATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAc < 1:961059/140‑1 (MQ=255)
tGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGCCGCCCGCGCGATTTTGTTTTATACCGTGGTGTGAACGTCAGCGAAGCGTCTGTGCtt > 2:66465/1‑139 (MQ=255)
tGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCGCGCTTTTTTTTTATTCCCGGGGCTGAACCTCAGCCCAGCTTGGGTAcgg > 6:274957/1‑138 (MQ=255)
gTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGGCGGCCGCTCGCTTTTGTTTTATACCGGTGTCTGAACGTCAAGGAAGCGTCAGTACTGGTTActc > 2:888957/1‑138 (MQ=255)
ttATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGGTGGCCGCCCGCGCGATTTTTTTTTATAACGAGGTGTGAACGTCAGCGCATCGTCTGTACTGGGTAagcg > 8:88559/1‑140 (MQ=255)
ttATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTTGCCGCCCGCGCGCTGTTGTTTTATACCCTGGTGGGAACGTAAGCGACGCTTGTGTACGGGGTAcgcg > 2:231793/1‑140 (MQ=255)
atatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCGGCGAAGCTTCTGTACTGGTTAcgcgcg < 1:129478/140‑1 (MQ=255)
atatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcgcgcg < 8:580078/140‑1 (MQ=255)
atatCGCGTTGCGCGGGAAATGTCGCTGCGCCAGGGGCGGTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCGCGATTTTGTTGTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcgcg < 4:1015813/138‑1 (MQ=255)
gCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGGCGCCCCCGCGCTTTTGTTTTGTAACGGGGGCTGAACGGCCGCGCAGGGTCTGTTCTGGGTTagcgcgggtcc > 5:941669/1‑135 (MQ=255)
cTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCCCCCGCGCGTTTTTGTTTTATACCGTGGTCTGAACGGACGCGAAGCAGATGTTATGGTTAAGCCCGCTAccc > 2:718221/1‑139 (MQ=255)
cTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGGTTGGCGCCCGCGCGCTTTTTTTTTATACCGGGGTCTGAACGTAAGCGGAGCGTCTGGTCGTGTTACGCCGGCTTACg > 1:1134768/1‑140 (MQ=255)
ttGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTTGGCGCCCCCGCGATTTTGTTTTATAACGTGGTCTGAACGTCAGCGAAGCTTGTGTTCTGGTTACGCGCGCGTccc > 4:1046521/1‑137 (MQ=255)
ttGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCg < 3:1055786/138‑1 (MQ=255)
ttGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCGAGATTTTGTTTTATTCCGTGGTCTGAAAGTCAGCGCAGCGTCTGTACTGGTTACGCGCGCGTCCg > 4:597187/1‑138 (MQ=255)
ttGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTTGCCGCCCGCTCGCGTTTGTTTTCTACCGTGGTCTGAACCTCAGCGCAGCTTCTGTTCTGGTTAAGCGCGCGTCCg > 4:784156/1‑138 (MQ=255)
tGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGGCGCCCCGACGACTTTGTTTTATAACCTGGTGGTAAACTCGCCGAAGCTTATGTACAGGTTACGCGCGCGTGCGaac > 2:209725/1‑138 (MQ=255)
gcgcGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTTGTTACGCGCGCTTCCGATca < 8:284353/140‑1 (MQ=255)
cgcgGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGCCGCACGCGCGAGTTTGGTTTGTAACGGTGTCGTAACGTCAGCGAAGCGTGTGTTAGGGTTACGGCCGGGTCCGAacac > 8:434173/1‑140 (MQ=255)
cgcgGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTAGAGTTTGTTTTGTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAGAGGTTACGCGCGCGTCCGCTcac > 2:566303/1‑140 (MQ=255)
gcgGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATca < 3:651967/138‑1 (MQ=255)
ggTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCACCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCa > 1:75497/1‑140 (MQ=255)
tGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCa < 3:572809/138‑1 (MQ=255)
tGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGt < 5:541095/140‑1 (MQ=255)
tGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGt < 8:104227/140‑1 (MQ=255)
tACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCa < 7:1062749/140‑1 (MQ=255)
tACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACCCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCgg < 4:727775/138‑1 (MQ=255)
tgatgaTCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGc < 1:438262/140‑1 (MQ=255)
tgatgaGCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCTCGCTTCCGATCACAATCCGCTACTCATTGAATTCAGTCCCGGCAAGc < 2:734393/140‑1 (MQ=255)
atgatCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCt < 6:511525/140‑1 (MQ=255)
tgatCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTg < 8:608174/140‑1 (MQ=255)
aGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaa < 1:171971/140‑1 (MQ=255)
aGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaa < 8:596503/140‑1 (MQ=255)
aGCGCCGTCGGGCGGTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGata < 3:173119/138‑1 (MQ=255)
gcCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaataa < 2:857482/140‑1 (MQ=255)
gcCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaataa < 6:942917/140‑1 (MQ=255)
cGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAgg < 6:338156/140‑1 (MQ=255)
gCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTc < 7:429964/140‑1 (MQ=255)
gCGTTTGGCCGCCCGCTATATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGTAGCTTCTGTACTGGTTACGCGAGCTTCCGATCACAATCCGCTACTCGTTTAATTCAGTCCCGGCAAGCCTGTTAAATAAGGTATGTc < 5:238871/140‑1 (MQ=255)
tGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAgg < 3:1119663/138‑1 (MQ=255)
tGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAgg < 4:345416/138‑1 (MQ=255)
tGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTc < 1:462947/140‑1 (MQ=255)
tGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCAGGCAAGCCTGATAAATAAGGTATGTCAgg < 4:446698/138‑1 (MQ=255)
tGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCGTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAgggc < 2:1150558/140‑3 (MQ=255)
tGGCCGCCCGCTCGAATTTGTTTTCTACCGTGGGCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAgg < 4:725011/138‑1 (MQ=255)
tGGCCACCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTc < 8:609410/140‑1 (MQ=255)
gcccgcTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGc < 3:27574/138‑1 (MQ=255)
gcccgcTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCca < 6:279680/140‑1 (MQ=255)
gcccgcTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCca < 1:238890/140‑1 (MQ=255)
gcccgcTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCca < 2:508982/140‑1 (MQ=255)
gcccgcTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCca < 2:972470/140‑1 (MQ=255)
gcccgcTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCca < 5:2282/140‑1 (MQ=255)
gcccgcTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTAGGTCAGGTCTGCca < 6:919379/140‑1 (MQ=255)
gcccgcTAGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCca < 8:729209/140‑1 (MQ=255)
cccgcTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCcac > 2:363546/1‑140 (MQ=255)
cgcTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGcccc > 4:975653/1‑136 (MQ=255)
cTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCCACAggg < 2:959692/140‑1 (MQ=255)
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GGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCCACAGGG > NZ_CP022686/3734241‑3734518
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
