Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F2 I0 R1
|
122 |
5985.5 |
7364544 |
98.3% |
7239346 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,734,380 |
T→G |
18.6% |
L229R (CTC→CGC) |
yafD → |
endonuclease/exonuclease/phosphatase family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,734,380 | 0 | T | G | 18.6%
| 194.9
/ 8.1
| 141 | L229R (CTC→CGC) | yafD | endonuclease/exonuclease/phosphatase family protein |
| Reads supporting (aligned to +/- strand): ref base T (16/94); new base G (27/2); total (45/96) |
| Fisher's exact test for biased strand distribution p-value = 1.79e-15 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 142 total aligned reads displayed.
GGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCCACA > NZ_CP022686/3734241‑3734515
|
cccGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCg > 7:405277/1‑140 (MQ=255)
ggTCATTATGTCGTGAGATTTCAATGCATGGAGCCGTAGCAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGTCCGCCCGCTCGAtt < 8:652026/140‑1 (MQ=255)
ggTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGAtt < 3:818378/140‑1 (MQ=255)
ggTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGAtt < 8:582791/140‑1 (MQ=255)
ggTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGAtt < 8:582787/140‑1 (MQ=255)
gTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCTCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCCGGGGGTTGTCCGCCCGCGCGaa > 5:582353/1‑137 (MQ=255)
gTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGTTTTGACGCCCCCTccct > 6:439275/1‑135 (MQ=255)
gcATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGAtt < 6:130901/137‑1 (MQ=255)
aTGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGCCGCCCCCCAGATtttttttt > 3:919373/1‑140 (MQ=255)
aTGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGtttt < 4:493332/140‑1 (MQ=255)
ggCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTTGCCGCCCGCTCGATTTTGTTTTCt > 2:507357/1‑140 (MQ=255)
cGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGCCGCCCCCGCGGTTTTGTTTTATAc > 2:760181/1‑140 (MQ=255)
cGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCCGGCGGTTGGCCGCCCCCGCGCGTTTGTTTTGTaa > 1:774168/1‑139 (MQ=255)
gggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTa < 6:113552/138‑1 (MQ=255)
gggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGCCCCCCGCGCGCTTTTGTTTTTTAca > 7:121764/1‑139 (MQ=255)
gagaTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCCATTTTGTTTTGTACCgg > 8:268711/1‑139 (MQ=255)
cAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGGCGCCCGCGCGAGGTTTTTTTGTACCGTGGtgt > 5:541600/1‑136 (MQ=255)
tGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGaa < 6:636492/138‑1 (MQ=255)
gCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAAc < 5:175006/138‑1 (MQ=255)
ggAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGGTGGGCGGCCGGTCGTTTTTGGTTTATTCAGGGGGCTGAACGGCatg > 1:831584/1‑138 (MQ=255)
cgCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGTAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCATCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 3:14513/139‑1 (MQ=255)
cgCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 5:109136/137‑1 (MQ=255)
cgCCGTAGAAGGAGGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGGTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 6:871710/137‑1 (MQ=255)
aGCCGTAGAAGGATGATCGCGTTATATCGCTTTGCGCGGGTAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTTCCGTGGTCTGAACGTCAGc < 5:410801/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATCTCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 5:391996/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 5:793638/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 8:195331/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 2:301630/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGGCTGAACGTCAGCGa < 4:294889/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGGTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 4:648742/140‑1 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGTTTTGCCGCCCGCGCGCATTTTTTTTGTAACGTGGGCTGAACGTAAGCGAAGcat > 1:392867/1‑138 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGGCGCCCGCGCGCTTTTTTTTTTTACCGGGGTGTGGACGTCAGCGGAGcgt > 7:784713/1‑138 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCtt < 3:763974/140‑1 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGCCGCCCGCTCGATTTTGTTTTGTACCCTGGTCTGAACGTCAGCGCAGCtt > 7:491711/1‑140 (MQ=255)
tAGAAGGATGAACGCGGTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCtt < 8:155998/140‑1 (MQ=255)
aaGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGc < 5:718709/137‑1 (MQ=255)
aGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTc < 8:405277/140‑1 (MQ=255)
gAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGGCGCCCGCGGGATTTTTTTTTGTACCGTGGTGTGAACGTCAGCGAAACtt > 6:592262/1‑138 (MQ=255)
gAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGCCGCCCGCGCCGGTTTTTGTTTTAACCTGGTCTGAACGTAAGCGCAGcgt > 6:515449/1‑136 (MQ=255)
gAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGGTGGCCGCCCGCGCGCTTTTTTTTTTTTACGGGGGGTGAAAGGCAGCGAAGCtt > 5:251855/1‑138 (MQ=255)
tgATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGAGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTa < 3:374223/139‑1 (MQ=255)
ggATGAACGCGTTATATCTCTTTGCGCGGGAAATGTCGCTGCGACAGGTGCGTTTTACTGAGGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTg < 6:497371/138‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTg < 6:798176/138‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTa < 4:294126/140‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTa < 4:818058/140‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTa < 1:278709/140‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTAGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTg < 6:802061/138‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTGTTACTGATGATCAGCGCCGGCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTg < 6:201706/138‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGAGGGAAATGTCGATGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCTGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTg < 6:669744/138‑1 (MQ=255)
ggATGAACGCGGTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGCCGCCCGCTAGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTg < 6:669745/138‑1 (MQ=255)
tGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑Tg < 3:747439/140‑1 (MQ=255)
tGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGCCGCCCGCTCGTTTTTTTTTTATAACGGGGTGTGAACGTCAGCGAAACTTATGTaatt > 2:505826/1‑137 (MQ=255)
aaCGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCTAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGCCGCCCGCGCGATTTTGTTTTATAACGGGGTCTGAACGTCAGCGAAGCTTCTGTaagggt > 8:207622/1‑135 (MQ=255)
aaCGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTTGGCGCCCGCGCGATTTTTTTTTTTACACTGGTGTGAACGTCAACGAAGCTTATGTaattgt > 3:334076/1‑135 (MQ=255)
cgcgTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGGTGGGCGCCCGCGCGCTTTTTTTTTTTACAGGGGTGTGAACGTCAGCCCAGCTTCATTAC‑Tgggtt > 1:337788/1‑137 (MQ=255)
cgcgTTATATCGCTTTGCGCGGGAAATATCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTGGGGCGTTTGGGCGCCCGCGCGAGTTTTTTTTGTAACCGGGTGTGCACGTCAGCGACGCTTCTTTaaaggg > 6:232924/1‑133 (MQ=255)
cgTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTAcg < 2:446202/140‑1 (MQ=255)
cgTTATATCGCTTTGCGCGGGAAATGTCGCGGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCGCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTAcg < 8:58229/140‑1 (MQ=255)
atatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTAcgcgcg < 8:445220/140‑1 (MQ=255)
atatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTAcgcgcg < 2:301312/140‑1 (MQ=255)
cGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTc < 4:4956/140‑1 (MQ=255)
cGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGGCGCCCGCGCGGTTTTTTTTTGTTACGGGGTCTGAACCTCAGCGGAGCTTGTGTTA‑TGGGTTAgcgcgcgtg > 8:755037/1‑137 (MQ=255)
cGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTGTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTc < 4:238775/140‑1 (MQ=255)
tGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGTTTGGCCGCCCGCGCGATTTTGTTTTCTACCGGGGTCTGAACGTCAGCGAAGCGTCTGTTC‑TGGTTACGCGCGCATGCGAta > 8:359649/1‑139 (MQ=255)
tGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCGGGATTTTGTTTTGTTACGTGGTGTGAAACTCAGCGGAGCGTCTGTTCTTGGTTA‑GCGCGCTTACGaaa > 1:690741/1‑138 (MQ=255)
gcgcGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATca < 7:110943/140‑1 (MQ=255)
gcgGGAAATGGCGCTGCGCCAGGTGCGTTTTCCTGATGATCAGCGCCGTCGGGCGGTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCCGCGAAGCTTCTGTAC‑TGGTTCCGCGCGCTTCCGATcaca < 7:70638/140‑1 (MQ=255)
cgGGAAATGGCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGGCGGGCGTGTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACaa < 3:166151/140‑1 (MQ=255)
gTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTGGGGCGTTTGGCCGCCCGCTAGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGCAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCt < 5:458882/138‑1 (MQ=255)
cgcCAGGTGCGTTTTACTGATGATCAGCGCCGTGGGGCGGTTTGGCGCCCGCGAGATTTTGTTTTGTAGCCTGGTATGAACCTGAGCGAAACGAGTGTAC‑TTTTGAAGCGCCGGTCCGAGAACAAACCGCGACTccgtgt > 8:153228/1‑135 (MQ=255)
gcCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGaa < 4:198922/140‑1 (MQ=255)
cAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAAtt < 4:447959/140‑1 (MQ=255)
cAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAAtt < 4:364996/140‑1 (MQ=255)
aGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCCCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGCATCTTCAGGTA‑TGGTTACGCGCGGGTGCGGTCACAATCCGCTACTAGTTGAttta > 8:422570/1‑139 (MQ=255)
ttttACTGATGATCAGCGCCGTCGGGCGGTTGGGCGCCCCCGCGATTTTGTTTTATACCGGGGGGTGAACGTCACCCCACCGTCTGTAA‑AGGGTAACCGCGCGTCCGAACCCAAACCCCGACAAGTTGAAATAAGTcccc > 2:599151/1‑139 (MQ=255)
ttACTGATGATCAGCGCCGTCGGGGGGTTGGCCGCCCGCGCGATTTTGTTTTATAACGGGGGGTGAACGTCAGCGAAGCGTCTGTAC‑TGGTTTAGCGCGCGTCCGATCACAAACCGCGACTCGTTGAATTCAGTaccc > 6:474178/1‑137 (MQ=255)
ttACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGc < 1:439312/140‑1 (MQ=255)
aCTGATGCTCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCaa < 7:818819/140‑1 (MQ=255)
aCTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCAGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGc < 6:255852/138‑1 (MQ=255)
atgatCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCt < 2:805129/140‑1 (MQ=255)
atgatCAGCGCCGTCGGGCGGTTGGCCGCCCGCTAGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCGGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCt < 4:596652/140‑1 (MQ=255)
tgatCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTg < 4:369233/140‑1 (MQ=255)
gatCAGCGCCGTCGGGCGGTTGGCCGCCCGCTCGATTTTGTTTTATACCGTGGTATGAACGGCAGCGAAGCTTCTGTAC‑GGGTTAAGCGCGCTTCCGCTCACAATCCGCGACTCGGTGAATTAAGTCCCCGCCAGCCTGa > 8:715554/1‑140 (MQ=255)
atCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGat < 2:371658/140‑1 (MQ=255)
aGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGGCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaa < 4:319883/140‑1 (MQ=255)
gcgcCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaat < 7:667861/140‑1 (MQ=255)
ccGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAg < 2:52610/140‑1 (MQ=255)
ccGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACAGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGTCAAGCCTGATAAATAAg < 7:733408/140‑1 (MQ=255)
cGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAgg < 3:920215/140‑1 (MQ=255)
cGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAgg < 1:159515/140‑1 (MQ=255)
gCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACTATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATg < 5:382284/138‑1 (MQ=255)
gCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATg < 5:737523/138‑1 (MQ=255)
gCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTc < 2:842608/140‑1 (MQ=255)
gCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTc < 8:755035/140‑1 (MQ=255)
gCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGGCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTc < 2:701540/140‑1 (MQ=255)
tGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTc < 7:480280/140‑1 (MQ=255)
ccgcccgcTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCCCAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCt > 5:532596/1‑138 (MQ=255)
cgcccgcTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTg < 5:473714/138‑1 (MQ=255)
gcccgcTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCca < 7:834532/140‑1 (MQ=255)
ccgcTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCcaca < 7:566/140‑1 (MQ=255)
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GGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTAC‑TGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCCACA > NZ_CP022686/3734241‑3734515
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
