Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F13 I0 R1
|
230 |
5035.0 |
9125430 |
98.4% |
8979423 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,734,380 |
T→G |
15.1% |
L229R (CTC→CGC) |
yafD → |
endonuclease/exonuclease/phosphatase family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,734,380 | 0 | T | G | 15.1%
| 303.5
/ 7.5
| 172 | L229R (CTC→CGC) | yafD | endonuclease/exonuclease/phosphatase family protein |
| Reads supporting (aligned to +/- strand): ref base T (10/128); new base G (28/2); total (41/131) |
| Fisher's exact test for biased strand distribution p-value = 2.89e-21 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 184 total aligned reads displayed.
GGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCCACAGGG > NZ_CP022686/3734241‑3734518
|
ggCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCt < 3:499489/140‑1 (MQ=255)
ggCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATCATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCt < 6:514661/140‑1 (MQ=255)
cccGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGGCGCCcgcgcg > 4:743059/1‑140 (MQ=255)
cccGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGGTTGGGCGCCcgcgcg > 6:292201/1‑140 (MQ=255)
cGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGGGTTTGGGCGCCcgcgcggg > 2:203043/1‑138 (MQ=255)
cGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGGGTTTGGGCGCCcgcgcgcg > 3:710694/1‑138 (MQ=255)
cGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTATTGGCGCCCCCGCGAt > 3:64366/1‑140 (MQ=255)
ggTCATTATGGCGGGAGATTTCAATGCCTGGCGCCGTAGAACGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGa < 8:333866/138‑1 (MQ=255)
ggTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGAtt < 2:1012201/140‑1 (MQ=255)
gTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGATATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCCGGGCGTTT‑GCCGcccgcccggt > 7:760809/1‑136 (MQ=255)
tCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTTCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGAtttt < 4:1023104/140‑1 (MQ=255)
tGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTT‑CGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGtttt > 7:272856/1‑138 (MQ=255)
cGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGGCTTTGGGCCCCCGCCCGATAttttttattaa > 1:897793/1‑135 (MQ=255)
ggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATTATCAGCGCCGT‑CGGGCGGTTGGCCGCCCGCGCGATGTTGgtttattc > 8:1072360/1‑134 (MQ=255)
gagaTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGGGTGGCAGGCCGCGGGAGTTTGTTTTTTACCgg > 5:2235/1‑139 (MQ=255)
gaTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGGGTGGGCGGCCGCGGGCTTTTGTTTTGTACCGTgg > 1:691015/1‑140 (MQ=255)
aTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTg < 8:1010754/138‑1 (MQ=255)
aTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGt < 6:908974/140‑1 (MQ=255)
aaTGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGaa < 2:599554/140‑1 (MQ=255)
atgagtGGAGCCGTAGAAGGATGATCGCGTTATGTCGCGTTGCGCGGGAAATGTCTCTGCGCCAGGTGCGTTATACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAAc < 2:56006/135‑1 (MQ=255)
ccTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGGTTGGCCGCCCGGGCGAGTTTTTTTTTTACCCTGGTTTGAACGta > 5:609671/1‑139 (MQ=255)
tgCCGTAGAATGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTTATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTAACGTGGTCTGAACGTCAGCGa < 3:938993/139‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCTCTTTTCGCTGGAAATGTCGCTGCGCCTGGTTCTTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 5:817586/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 8:835092/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 5:299204/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 1:804170/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 6:1014425/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 2:611910/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 1:1134673/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGACAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 6:562496/140‑1 (MQ=255)
cGTAGTAGGATGAACGCGTGATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTGTTACTGATGAGCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGc < 1:607894/140‑1 (MQ=255)
cGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGaa < 8:222448/138‑1 (MQ=255)
cGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGc < 3:417864/140‑1 (MQ=255)
cGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTATACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGc < 6:350539/140‑1 (MQ=255)
cGTAGAAGGATGAACGCGTTATATCGCTTTGAGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGc < 1:738053/140‑1 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCTGCGCCGT‑CGGGCGTTTGGCCGCCAGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGc < 7:926820/138‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCTGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGAGCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTg < 8:273843/138‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTa < 3:767494/140‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTa < 2:1128337/140‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTa < 2:669918/140‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGGTTTGCCGCCCGCGCGATTTTTTTTTCTACCGTGGTCTGAACCTCAGCGAAGCGTCTGTa > 4:217216/1‑140 (MQ=255)
aaCGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGGTTGGCCGCCCGCTCGGTTTTGTTTTATTCCGTGGTCTGAACGTCAGCGAAGCGTCTGTACTGGt > 4:633368/1‑140 (MQ=255)
aaCGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGGGTGGGCGCCCGCGGGAGTGTTTTTTATACCTCGGTGAGAACGTCAGCGCAGCATCGTTACttgg > 3:527110/1‑137 (MQ=255)
cgcgTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGGCGCCCGCGAGATTTTTTTTTCTACCGGGGTCTGAACGTCCGCGCAGCGTCGGTGCTggg > 8:102680/1‑137 (MQ=255)
gTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGGTTGGGCGCCCCCGCGATTTTGTTTTGTACCCTGGTCTGAACGTCAGCGCCGCGTCTGTTATGGTTAcgc > 2:261405/1‑140 (MQ=255)
ttATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGGGGTTGGGCGCCCGCGCGATTTTTTTTTATAACGTGGGCTGAACGTCAGCGAAGCTTATGTACGGGTTTcgcc > 1:803704/1‑139 (MQ=255)
ttATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcgcg < 5:872129/140‑1 (MQ=255)
ttATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGG‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcgcg < 4:585108/140‑1 (MQ=255)
atatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcgcgcg < 2:27329/140‑1 (MQ=255)
atatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcgcgcg < 6:257999/140‑1 (MQ=255)
atatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcgcgcg < 3:1113043/140‑1 (MQ=255)
tatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACgcgcgc < 5:934179/140‑1 (MQ=255)
tatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGGGTTGCCGCCCGCGCGGTTTTTTTTTATAACGGGGTGTGAAAGTACTCGCAGCTTCTGTGCTTGTTAcgggc > 8:665529/1‑138 (MQ=255)
atCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGGGGTTGGCCGCCCGCGCGATTTTTTTTTATAACGTGGTCTGAACGTCAGCGAAGCGTCTGTTCTGGTTTCgcgcgcg > 6:375608/1‑139 (MQ=255)
gCTTTGCACGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTcc < 1:571135/140‑1 (MQ=255)
cTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGGGGTTGGGCGCCCCCGCGATTTTGTTTTATTACGTGGTCTGAACGTGAGCGAAGCTTCGTGACTTGGTACGCGCGCGTccc > 6:836019/1‑139 (MQ=255)
tttGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑GCGGCGTTTGGGCGCCCCCTCGATTTTGTTTTATTAAGTGGTCTGAAAATAAGCGAAGCCTATGTTATGGTTAAGCGCGCtggcgc > 6:361751/1‑135 (MQ=255)
ttGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTATTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCg < 7:674912/138‑1 (MQ=255)
gcgcGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGAt < 8:528387/138‑1 (MQ=255)
cgcgGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑GGGGCGTTTGGGCGCCCGCGCGCTTTTGTTTTCTTCCGTGGGGTGAAACTCAGCGAAGCGTCTGTAATGGTTTCGCGCGCGTCCgctgac > 2:645375/1‑135 (MQ=255)
cgcgGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGGTTTGGCGCCCGCGCGGGTTTTGTTTGTTCCGTGGTGTGTCCGTCAGCGCAGCATGTGTTCTGGTTTAGCGCGCGTCCGATcac > 1:513544/1‑140 (MQ=255)
gcgGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATcaca < 1:1092578/140‑1 (MQ=255)
gcgGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATcaca < 3:217216/140‑1 (MQ=255)
gcgGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGGTACGCGCGCTTCCGATca < 7:465325/138‑1 (MQ=255)
aaTGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGc < 3:174284/140‑1 (MQ=255)
aTGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCt < 4:991410/140‑1 (MQ=255)
gTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTAc < 2:768352/140‑1 (MQ=255)
gTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTAc < 3:915552/140‑1 (MQ=255)
cAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAAtt < 2:628183/140‑1 (MQ=255)
cAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGGTTGGCCGCCCGCTCGATTTTGTTTTCTCCCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGaa < 8:852941/138‑1 (MQ=255)
tGCGTTTTACTGATGATCAGCGGCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGATTTCAGt < 5:585684/140‑1 (MQ=255)
tttACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCgg < 4:650598/140‑1 (MQ=255)
ttACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCTCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCg < 7:1056695/138‑1 (MQ=255)
tACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCa < 3:185512/140‑1 (MQ=255)
tgatgaTCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGc < 4:140940/140‑1 (MQ=255)
tgatgaTCAGCGCCGT‑CGGGCGGTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGc < 6:667346/140‑1 (MQ=255)
ttgatCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGGCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCt < 2:309570/139‑1 (MQ=255)
atgatCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCt < 6:1088056/140‑1 (MQ=255)
atgatCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCt < 5:563588/140‑1 (MQ=255)
tgatCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTg < 4:529683/140‑1 (MQ=255)
tgatCAGCGCCGG‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTg < 1:1027130/140‑1 (MQ=255)
gatCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTGTAACGTTGTCTGAACGTCAGCGCAGCTTGAGTACAGGTTACGCGCGCGTCCGATCAAAATCCCCTACTCGTTTAAATCAGTACCGGCAAGccg > 8:642833/1‑137 (MQ=255)
aGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaa < 1:473462/140‑1 (MQ=255)
gcCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaataa < 1:261427/140‑1 (MQ=255)
ccGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaata < 7:434279/138‑1 (MQ=255)
gCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTc < 4:257695/140‑1 (MQ=255)
gCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTc < 6:465489/140‑1 (MQ=255)
gCGTTTGGCCGCCCGCTAGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATATATAAGGTATGTc < 6:18403/140‑1 (MQ=255)
gCGGTTGGCCGCCCGCTCGATTTTGGTTTCAACCTTGCGCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATg < 7:703438/138‑1 (MQ=255)
ttGGCCGGGCGCTCGATTTTGTTTTCTACCGTGTTCTGATCGTCAGCGAAGCTTCTGTACTGGATACGCGCGCTTCCGATCACATTCCGGTACTCGGTGAAGTCAGTCCCGGCTAGCCTGATAAATATGGTATGTCAg < 8:1040601/138‑1 (MQ=255)
ttgccgccCGCTCGATTTTGTTTTCTAACGTGGTCTGAACGTCAGCGAAGATTCTGTAATGGTTACGCGCGCTTCCTATAACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATTAGGTATGTCAGGTc < 6:888781/138‑1 (MQ=255)
tGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGGCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAgg < 8:941622/138‑1 (MQ=255)
gcccgcTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCca < 1:223237/140‑1 (MQ=255)
gcccgcTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCca < 6:653176/140‑1 (MQ=255)
gcccgcTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCca < 1:670576/140‑1 (MQ=255)
gcccgcTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCca < 2:394086/140‑1 (MQ=255)
gcccgcTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCca < 3:598548/140‑1 (MQ=255)
gcccgcTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCca < 5:375608/140‑1 (MQ=255)
gcccgcTCGATTTTGTTTTCTACCGTGGTCTGAACGTAAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCca < 4:469807/140‑1 (MQ=255)
ctctATTTTTTTTTATACCGGGGTCTTAAGGTAATCTAATTTTCTTTACTGTTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTTAATTATTTCCCGGCAAGCCTTATAAAAAAGTTATGTCAGGTCTGCAAAAggg < 6:870857/140‑1 (MQ=255)
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GGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGT‑CGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCCACAGGG > NZ_CP022686/3734241‑3734518
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
