Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F13 I0 R1
|
235 |
6960.4 |
9135780 |
98.4% |
8989607 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,797,481 |
T→G |
16.4% |
L130V (TTA→GTA) |
CIW80_RS19065 → |
LacI family DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,797,481 | 0 | T | G | 16.4%
| 244.4
/ 20.3
| 145 | L130V (TTA→GTA) | CIW80_RS19065 | LacI family DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (28/91); new base G (24/2); total (52/93) |
| Fisher's exact test for biased strand distribution p-value = 5.22e-11 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 151 total aligned reads displayed.
CAGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATC > NZ_CP022686/3797345‑3797617
|
gCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCg‑tgagtt > 6:284847/1‑140 (MQ=255)
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGCg‑tgtgttt > 1:210353/1‑134 (MQ=255)
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGATGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCg‑ttttttt > 5:843484/1‑135 (MQ=255)
cGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATTAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTAtt < 3:404601/138‑1 (MQ=255)
gCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCATCAAGGCAACCCGGCGGCG‑TTAGGTtttttt > 5:227694/1‑140 (MQ=255)
cTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTg > 1:270538/1‑140 (MQ=255)
tATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGGCG‑TTTGTTATTTTTgggt > 6:144098/1‑138 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCACGGCAACCCGGCGGCG‑TTTGTTATTTTTTGTTCTCaagt > 2:406055/1‑137 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTAGTT‑TTTTTGGTTATAAGtt > 5:882239/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTTTTTTTTTTTGGTTGTCAGtt > 1:108600/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑GTTGTTTTTTTTTGGTTTCAGtt > 1:987056/1‑140 (MQ=255)
cGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTTTTTTTTGTTGTGAGTTg > 1:197651/1‑140 (MQ=255)
cGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTg < 1:1003246/140‑1 (MQ=255)
cGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTg < 5:293925/140‑1 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTTGGTATTTTTTGTTGTCAGtt > 4:384468/1‑138 (MQ=255)
ttGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCAGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTg < 3:559929/138‑1 (MQ=255)
ttGCAGCAGGTGCTTAATAAAAAAGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATGAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGc < 7:90031/140‑1 (MQ=255)
cagcagGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGa < 8:314934/140‑1 (MQ=255)
agcagGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGtgtgcgg > 4:607017/1‑132 (MQ=255)
ggTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATaaaa < 2:905338/140‑1 (MQ=255)
ttcTTAATAAAAATGAATTCGAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGTTGACGCTTCTTCAAGGCATCCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAATACt < 2:1175358/138‑1 (MQ=255)
tGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACt < 5:131608/140‑1 (MQ=255)
tGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTAAAAGAATCAGAAATTCTGATGACGCTGCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGTCTGATAAAACt < 1:285571/140‑1 (MQ=255)
gCTTAAGAAAAATGAATTCCCGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCACGGCAACCCGGCGGCG‑GTTGTTTTTTTTTGTTGTGAGGTGGGGGaaaaaaa > 3:608064/1‑137 (MQ=255)
taataaAAATGAATTCCAGCTACTGCTTGGGTGTTATGAGTATAATCAGCTCTAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAcc < 6:45018/140‑1 (MQ=255)
taataaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTTTTTTTGGTTCTGAGTTGGCTGATAAAACTCAcc > 2:712355/1‑140 (MQ=255)
taataaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAcc < 1:763802/140‑1 (MQ=255)
aTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTATTTATTTTTGGTTATCAGTTGGCGGATAAAACACACCAGATAc > 3:279561/1‑138 (MQ=255)
aTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑GTAGGTATTTTTGGTTATCAGTTGGCTGATAAAACGCACCAGATAc > 4:113147/1‑138 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCgag < 3:476032/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCgag < 3:44990/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 2:549804/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 7:233643/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 7:748520/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGGCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGCG‑TTAGTTATTTTTGGTTCTAAGTTGGCTGATAAAACTAACCAGGTTCTCGAGaa > 8:859376/1‑140 (MQ=255)
ttCAAGCTACTGCTTGGGTGTCATTAGTATAATAAGATCAAAGAAGCTGAAATTCTGATGACGCTTCTTAAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 7:96311/140‑1 (MQ=255)
cgCTACTGCTTGTGTTTCATGAGTATAATCAGCTCAAAGTAGCTGATATTCTGATGACGCTTCTTCAAGGCTACCCGGCGGCG‑TTAGTTATTTTTGGTTCTGAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACa < 8:1084641/139‑1 (MQ=255)
cgCTACTGCTTGGGTGTCATGATTATAATCATCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGTCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACa < 2:17072/139‑1 (MQ=255)
gCTACTGCTTGGGTGTCATGAGTATAATCATCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAAc < 3:745264/138‑1 (MQ=255)
gCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTTGTTATTTTTGGGTGTCAGTTGGCTGATAAAACTAACCAGATACTCGAGCAAACaa > 2:421399/1‑140 (MQ=255)
tACTGCTTGGGTGGCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACaa < 4:247298/138‑1 (MQ=255)
aaCTGCTTGGGTGTCATGAGAATAATCAGCTAAAAGAAGCTGAAATTCTGATGACGCTGCTTCAAGGCACCCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACaa < 4:620091/137‑1 (MQ=255)
aCTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAata < 1:810311/140‑1 (MQ=255)
gCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAatat < 4:993965/138‑1 (MQ=255)
gCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtac < 5:42857/140‑1 (MQ=255)
gCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtac < 6:11096/140‑1 (MQ=255)
gttGGGTGGCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTGGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 5:939056/139‑1 (MQ=255)
catGGGTGTCATGAGTAGAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGGTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 2:294210/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 6:784213/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 2:728364/140‑1 (MQ=255)
ttGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacct < 7:123580/140‑1 (MQ=255)
ttGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacct < 8:52220/140‑1 (MQ=255)
gggTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTTGGTATCAGTTGGCTGATAAAACTAACCATATAATCGAGAAAACAAATAtacaaac > 7:525882/1‑136 (MQ=255)
tCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑GTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGttt > 2:533155/1‑139 (MQ=255)
tCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGATTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTTGTTCTAATTTTGGTGATAAAACTCACCAGATACACAAGAAAACAAATATACAAACCGTTa > 6:201733/1‑140 (MQ=255)
aTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGGCG‑GATGTTATTTTTGGTTCGCAGTGGGGGGTGTAAACTGACCCGATTCGGGGGCAAACAAGTTTACCTTCCGtgtac > 6:1043048/1‑136 (MQ=255)
aTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑GTAGTTATTTTTGGTTGTCACTTGGCTGATAAAACTCCCCAGTGACACGAGAAAACAAAAATACCGACCGTTTAc > 6:553627/1‑140 (MQ=255)
tataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TGAGTTATTTTTGGTTGTCAGTTTGGGGGAAAAACTCACCAGATACACGAGAAAACAAATATACCTACCGTTAAAGgtgt > 7:845396/1‑140 (MQ=255)
taATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCAGGCGTCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCg < 1:85227/140‑1 (MQ=255)
agacaggCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCg < 7:76715/134‑1 (MQ=255)
aTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGt < 7:213336/140‑1 (MQ=255)
aTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGt < 5:514042/140‑1 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCGGAGTTGGGTGATTAAACTCACCAGCTCCTCGCGAAAACAAATATACCTACCGTTAACGTTGTCgggtgcc > 2:490381/1‑135 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑GTTTTTTTTTTTGGTTGTGAGTTTGGGGATAAAAGGCACCAGAGTCTGGAGAAAACAAATATACCTAACGTTTACGTTGGAGGGTccc > 8:69974/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑GTTGTTTTTTTTTGTTGTCAGTTGGCGGTTAAAAAGACCCAGATACTCGACAAAACAAATATACCAACCGTGAACGGTGTAGGTTtcc > 5:522456/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑GGTGTTTTTTTTGGGTCGCTGTTGGGGGAGAAAACACACCAGATAATCGAGAAAACAAATATACCTACCGGTAACGGTGTCgggtgcc > 1:846853/1‑135 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTTTTTTTTTTTTGTTATCAGTTTGGTGATAAAACGCCCCAGATAAGCGAGAAAACAAATTTAACTACCGATTAAGTTGTCGGTTaccc > 5:959044/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑GTAGTTATTTTTGGTTCTGAGTTGGGTGATAAAACGCACCAGGTACGAGCGAAAACAAATATAACTACCGTTTACGGTGTCGGGTaccc > 8:496157/1‑140 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑GTTGGTATTTTTGGGTGGCAGGTGGCGGATAAAACGCACCCGCTTCTCGCGGTAACAAATATACCTACCGGGAACGGTGTGGGTTgcccg > 8:247996/1‑139 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑GTAGTTTTTTTTGGTTATGAGTTGGCGGATAAAACTCCCCAGATACACGAGAAAACAAATATTCCTACCGTTAACGTTGTCGGTTccc > 4:64357/1‑138 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATAACTACCGTTAACGTTGTCGGTTaccc > 4:511280/1‑138 (MQ=255)
tGAAATTCTGATGACTCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGGTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCgg < 6:876819/140‑1 (MQ=255)
tGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCgg < 2:301522/140‑1 (MQ=255)
gAAATTCTGATGACGCTTCTTCAAGGCCACCCGGCGGCG‑GTTGTTTTTTTTGGTTCTCAGGGTGCGGTTAAAACGGACCAGATGCACGAGGAAACAAATATTACTACCGGTTTCGGTGTCGGGTGCCGGTtccgtccg > 4:627131/1‑138 (MQ=255)
gAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTAtt > 4:112758/1‑48 (MQ=255)
gAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTAtt < 3:112758/48‑1 (MQ=255)
aaaTTCTGATGAAGCTTCTTCAAGGCATCCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAACACAAATATACCTACCGGTAACGTTGTCGGTTCCCCTTTCAGTCCGGCt < 2:770571/140‑1 (MQ=255)
tgatgaCGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCaaa < 4:750981/138‑1 (MQ=255)
gaCGCTTCTTCAAGGCAACCCGGCGGCG‑TTTTTTATTTTTGGTTCTCAGGTGGCTGATTAAACTCACCCGATAAAAGATAAAACAAATATAACTAACGTTAACGTTGTAGGTTCCCCATTAAGTCCGGCACAAATTAccc > 2:916972/1‑139 (MQ=255)
cAAGGCAACCCGGCGGCG‑GTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACa < 3:274228/138‑1 (MQ=255)
ggCAACCCGGCGGCG‑TTAGTTATTTTTGGGTATCAGTTTGCGGATTAAACTCACCCGATACTAGAGAAAACAAAAATAACGACCCTTAACGTTGTCGGTTGCCCGTTAAGTCCGGCGCAAATTAACATCGAAACAGCaat > 2:461693/1‑138 (MQ=255)
cacggcggCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCAttttt < 4:764777/136‑1 (MQ=255)
ccGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCAtttttt < 4:811521/138‑1 (MQ=255)
gctgcg‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAATCTCACCAGATACTCGATAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 7:882647/137‑1 (MQ=255)
gcggcg‑TTAGTTATTTTTTGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 7:1004639/140‑1 (MQ=255)
gcggcg‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATTAAACTCACCAGATACTCGAGAAAACAAATATAACTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 5:201733/140‑1 (MQ=255)
gcggcg‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 3:1149297/138‑1 (MQ=255)
gcggcg‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 3:559374/138‑1 (MQ=255)
gcggcg‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 7:538994/140‑1 (MQ=255)
gcggcg‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 2:188000/140‑1 (MQ=255)
gcggcg‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 2:635419/140‑1 (MQ=255)
gcggcg‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 5:210912/140‑1 (MQ=255)
gcggcg‑TTAGTTATTTTTGGTTCTCAGTTGGCTCATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 7:676628/140‑1 (MQ=255)
gcggcg‑TTAGTTATTTTTGGTTCTCAGGTGGCTGATAAAACTCACCAGATACTCGAGAAATCAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 8:758212/140‑1 (MQ=255)
gcggcg‑TTAGTTATTTTTGGTTCTCAGGTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 5:407582/140‑1 (MQ=255)
gcggcg‑TTAGTTATTTTTGGTGCTCAGTTTGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 6:755990/140‑1 (MQ=255)
gcggcg‑TTAGTGATTTTTGGTTCTCAGTTGGGTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCGTTTCAGTCCGGCTCAACTTACCATCGAAACAGCATTTTTTGaa < 3:377167/138‑1 (MQ=255)
gcggatttagttaTTTTTGGTTCTCAGTTGGCTGATAAAACTCTCCAGATACTAGAGTAAACATATATACGTACCGTTTACGTTGTCGGTTCCCCATTCTGTCCGGCTCAATTTAGCTTAGAAACTGCATTTTTTGTAGc < 6:857538/134‑1 (MQ=255)
ggcg‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 4:403309/138‑1 (MQ=255)
ggcg‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCAt < 6:620528/140‑1 (MQ=255)
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CAGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCG‑TTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATC > NZ_CP022686/3797345‑3797617
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
