Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F35 I0 R1
|
195 |
10216.4 |
8585726 |
98.3% |
8439768 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,797,481 |
T→G |
12.5% |
L130V (TTA→GTA) |
CIW80_RS19065 → |
LacI family DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,797,481 | 0 | T | G | 12.5%
| 237.2
/ 3.5
| 136 | L130V (TTA→GTA) | CIW80_RS19065 | LacI family DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (39/75); new base G (18/3); total (58/78) |
| Fisher's exact test for biased strand distribution p-value = 1.50e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 147 total aligned reads displayed.
AGCCAGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCA > NZ_CP022686/3797342‑3797618
|
aGCCAGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑gt < 7:552846/140‑1 (MQ=255)
cAGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑gttag < 1:616947/140‑1 (MQ=255)
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑gttagttt > 3:160021/1‑139 (MQ=255)
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑ggttgttt > 1:444999/1‑139 (MQ=255)
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCAGATGACGCTTCTTCAAGGCAACCCGGCGGC‑gtttgttt > 4:806445/1‑139 (MQ=255)
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCGTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCCAGGCAACCCGGCGGC‑gttaggtt > 2:508344/1‑137 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACGGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑ggtaggtt > 5:732623/1‑135 (MQ=255)
tttGCAGTCGTTGCAGCAGGTGCTTAATAAATATGAATTCCAGCTACTGCTTGGGTGTCATGATTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTgg < 5:466672/136‑1 (MQ=255)
tATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGATTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTgg < 5:495217/138‑1 (MQ=255)
aTGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTTGTTAttttttggtc > 3:948106/1‑135 (MQ=255)
gCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGCGGTTGGTTTTTTTTgttg > 5:288876/1‑135 (MQ=255)
cGTTGCAGCAGGTGCTTAATAAAAATGAATTCCATCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTg < 2:828739/140‑1 (MQ=255)
gTTGCAGCAGGTGGTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTTGTTTTTTTTGGGTGTCAGtt > 5:688217/1‑138 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTTGGTGTCATGAGTATAATCAGCTCAAAGACGCTGAATATCTGATGACGCTGCTTCAAGGCCACCCGGCGGC‑GTTTGAGATTTTTGGTTTGCAGtt > 6:166247/1‑138 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTATGTTTTTTTTGTTGTAAGtt > 5:717516/1‑138 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTgg < 3:533329/140‑1 (MQ=255)
ttGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGc < 3:1079337/140‑1 (MQ=255)
ttGCAGCAGGTGATTAATAAAAATGAATTCCATCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTg < 5:539140/138‑1 (MQ=255)
gcagcaGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTTTGTATTTTTTGTTGTCAGtttgggg > 1:146640/1‑135 (MQ=255)
gcagcaGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCACAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GATTGTTATTTTTTGTTAGCAGttttctg > 8:214591/1‑135 (MQ=255)
gcagcaGGTGCTTAATAAAAATGAATTCCAGCTACTGCGTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCCACCCGGCGGC‑GTTAGTTATTTTTTGTTATCAggttgcgg > 8:803021/1‑133 (MQ=255)
gcagcaGGTGCTTAATAAAAATGAATTCAAGCTACTGCTTGGGTGTCATGAGTATAATAAGCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTGATTTTTTGTTCTAAGTTggggg > 7:342944/1‑137 (MQ=255)
cagcagGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGTTATTTTTGGTTCTCAGTTGGCTGa < 2:940965/140‑1 (MQ=255)
cagGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGTTATTTTTGGTTAACAATTGGCTGGTaa > 8:265893/1‑140 (MQ=255)
cagGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGATCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATaa < 8:415052/140‑1 (MQ=255)
agGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGGTATTTTTTGGTATGAGTTGGCGGATtaa > 7:479191/1‑140 (MQ=255)
ggTGCTTTATAAAATTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGACGCTGAAATTCTGCTGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATaa < 6:678834/138‑1 (MQ=255)
gTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGCAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCTGC‑GGTTGGTATTTTTTGTTGTCAGGTGGCGGATaaa > 5:876897/1‑138 (MQ=255)
tGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAATCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACt < 8:295811/140‑1 (MQ=255)
tGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACt < 4:570240/140‑1 (MQ=255)
gCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTGTGAGTTGGCGGATAAAACTc > 2:535541/1‑140 (MQ=255)
cTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCa < 1:367859/140‑1 (MQ=255)
ttAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTTAAGGCAACCCGGCGGC‑GTTTTTTATTTTTTGTTCTAATTTTGAGGATAAAACta > 6:517463/1‑137 (MQ=255)
ttCCAGCTACTGCTTGGGTTTCATGAGTATAATCAGATCTAAGAAGCTGAAATTCTGATGACGCTTCTTCACGGCAACACGTCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCCCCAGATACTCgag < 5:888595/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 1:567054/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 2:110313/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 7:139715/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAACAGATACTCGAGaa < 4:806904/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCGCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 1:798816/140‑1 (MQ=255)
atCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 1:1057751/139‑1 (MQ=255)
ccAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaaa‑a < 4:515260/140‑1 (MQ=255)
cgCTACTGCTTGGGTGTCATGAGTATAATCCGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACa < 2:459157/139‑1 (MQ=255)
aGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaaa‑a < 6:1052703/138‑1 (MQ=255)
cTACTGCTTTGGTCTCATGAGTATACTCAGCTAAAAGAATCTGAAATTCTGACTACGCGTCTTAAAGGCAACCCGGCGGC‑GTTAGTTATTTATGATGCTAAGTTGTCTGATAAAACTCCCCAGATACTCGAGAAA‑ACaaa < 4:1009033/140‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACaaa < 1:1060413/140‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACaaa < 1:168621/140‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAAGTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACaaa < 1:69070/140‑1 (MQ=255)
cTACTGCTTGGGTGACATGAGTATAATCAGCTCACACAAGCTGAAAATCTGATGACGCATCTTCAAGGCAACCCGGCGGC‑GGTAGTTAATTATGGGTCTCAGTTGGCTGATACACCTCACCAGATACTCGAGAAA‑ACa < 6:366572/138‑1 (MQ=255)
gCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATAtac < 8:106708/140‑1 (MQ=255)
gttGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATAtacc < 3:435150/139‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCCAAGACGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATAtacc < 2:367150/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATAtacc < 2:406840/140‑1 (MQ=255)
tCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGt < 5:92933/138‑1 (MQ=255)
aTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTTGTTATTTTTTGTTGTCAGTTGGCTGATAAAACACAACAGATATTCGAGAAA‑ACAAATATACC‑TACCGTTaaa > 8:466077/1‑139 (MQ=255)
aaTCAGCTCAAAGAAGCTGAAATTCTGATGCCGCTGCTTAAAGGCAACCCGGCGGC‑GTTTGATTTTTTTGTTTGTAACTTTGCTGGTAAACCTCACCAGTTACGCGGTATA‑ACAAATTTACT‑TTCCGTTTAGGTTGTCgg > 8:582641/1‑140 (MQ=255)
aaTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTTGTTTTTTTTTGTTGTCAGTTGGCGGATAAAACTAACCACAAACACGAGAAA‑ACAAAAAAACCGAACCGTT‑ACGTTGTTgg > 7:618245/1‑140 (MQ=255)
aaTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTGTGAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTAACGTTGTCgg > 2:406453/1‑140 (MQ=255)
tCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTATGTATTTTTTGTTCTCAGTTGGCTGATAAAAAAAACCCGATAAAAGAGAAATAAAAATA‑ACC‑TAACGATAACGTTGTCGGtt > 3:615765/1‑140 (MQ=255)
tCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTTGGTTTTTTTTGTTCTGAGTTGGGGGATAAAACTCACCAGATAAAAGAGAAA‑ACAAATATACC‑TACCGTTAAAGTTGTGGGtt > 3:36133/1‑140 (MQ=255)
cAGCTCAAATAAGCTGAAATTCTGATGACGCTTCTTCAATGAAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAAATCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTAACGTTGTCGGTTc < 2:242426/140‑1 (MQ=255)
cAGCTCAAAGAAGCTGAAATTGTGATGACGCTTCATCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTTGCTGATAAAACTCACCAGTTACTCGAGAAA‑ACAAATATACC‑TACCGTTAACGTTGTCGGTTc < 2:720445/140‑1 (MQ=255)
cAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTGCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTAACGTTGTCGGTTc < 7:961730/140‑1 (MQ=255)
aGCTCAAAGACGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑TTTAGGGATTTATTGTTAGAAGTTTGCGGATAAAACACCCCAGAGACGCGAGAAA‑AAAAATATACC‑TACAGTTAACGGTGTAGGttac > 8:417799/1‑138 (MQ=255)
aGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGTCACCCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTAACGTTGTCGGTTcc < 8:1009479/140‑1 (MQ=255)
aGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTAACGTTGTCGGTTcc < 8:45710/140‑1 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTGAGTTTTTTTTGGTTGTCAGTTGGCGGTTTAAAATAACCAGATACTCGAGAAA‑ACAAATATAAC‑TACCGTTAAAGTTGTCGGTTgcc > 4:507541/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTTGGTTTTTTTGGTTGTGAGGTGGGTGATTAAACACCGCACAAACTAGCGGAA‑ACAAATATACC‑TACCGTTAAAGTTGTggggtgcc > 1:1088779/1‑135 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTTTTTTTGGTTGTCAGTTGGCTGATAAAACTCACCAGATACTCGGGAAA‑ACAAATATAAC‑TAACCGTAACGGTGTCGGTTcccc > 4:224686/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTTGGTGGCAGTTGGCGGATAAAACACAGCAGATAAGGGAGAAA‑AAAATTATAAC‑AACCGTTTAAGTTGTACGTTgccc > 8:858605/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTa < 7:810777/124‑1 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTa > 8:810777/1‑124 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTGATTTATTTTTGGTTGTGAGTTGGCGGGTTAAACACAACCGAGAGGCGAGAAA‑AAAATTATACG‑TACACTGAACGGTGTGGGGTcacc > 7:751809/1‑140 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGTAACCCGGCGGC‑GTTAGTTATTTTTTGTTCTGAGGTTGGGGTTAAAACTCACCAGCTACTCCAGAAA‑ACACATATACA‑AAACGGTAACGGTTTGGGGTccc > 6:347038/1‑138 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGGGGC‑GTTAGGTATTTTTGGTTCTCAGTTGGGTGATAAATCTTCCCAGCTACTCGAGAAA‑ACAAAAATACC‑TACCGTTAACGGTGTCGGTTccc > 6:598064/1‑138 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTATTTATTTTTGGTTGTGAGTTTGGTGATAAAACTAACCAGTAACTCGAGAAA‑AAAAATATACC‑GACCGGTAACGTTGTCGGTTCCCCt > 2:99993/1‑140 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTTTTTTTGGGTCTGAGTTGGCGGATAAAACTCACCAGCTACTCGGGACA‑ACAAATATACC‑GACCGTTTACGTTGTGGGGTgcccg > 2:31997/1‑139 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTTGGTATTTTTGGTTGGCAGGTGGCTGATAAAACACACCAGCAACTCGCAAAA‑ACAAAAATAAC‑AAACCTTAACCTTGTCGGTTccc > 6:327879/1‑138 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGGTGTTTTTTTTGGTTCTCAGTTGGCGGATAAAACTCCCCCGGTTCACGAGTAA‑ACAAAAATACC‑AACCGGTAACGGTGGCGGGTgcccg > 2:801959/1‑139 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTTTTTATTTTTTGTTATCAGTGGGCTGATAAAACAAACACTATAATCGATAAA‑AAAAATATAAC‑TACCCTTAAAGTTTTGGGTTgccc > 6:571805/1‑138 (MQ=255)
aaaGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTTTTTTTGGTTCTCAGTTGGGGGATAAAACTCACCAGATACTAGAGAAA‑ACAAATTTTCC‑AACCGGTTACGTTGTGGGTTgcccg > 6:1023025/1‑137 (MQ=255)
aaaGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTTGTTTTTTTTGGTTGTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑AAAAATATACC‑TACCGTTAACGTTGTCGGTTCCCCt > 6:506330/1‑138 (MQ=255)
agaagCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTATTTATTTTTGGTTGTCAGTTTGCTGATAAAAATCCACAGATACACGGTAAA‑AAAAAAATACC‑AACCGTTAAAGTTGTCGGGTCCCCttt > 5:94679/1‑138 (MQ=255)
cTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTGTCAGGTGGCTTAGTAAACGCACCAGATACTCGAGAAA‑AACAATATACC‑TACCGTTAACGTTGTCGGGTCCCCTTtccgtccg > 8:846957/1‑140 (MQ=255)
tGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGTTATTTTTGGTTCTCAGTTGGCTGATAAACCTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCgg < 3:85854/140‑1 (MQ=255)
tGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGA‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCgg < 3:806445/140‑1 (MQ=255)
gAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTTTTTATTTTTGGTTGTAAGTTGGGTGATAAAAATCACCAGATTCTCGAGAAA‑ACAAATATTCC‑TACCGTTATCGTTGTCGGTTACCCGTTCAGTGCg > 6:188039/1‑138 (MQ=255)
tCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCaaa < 3:627881/140‑1 (MQ=255)
tcttcAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGa < 6:666412/138‑1 (MQ=255)
attcAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATAATCGAGAAA‑ACAAATATACC‑TACCGTTAACGTTGTCTGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGaa < 6:920241/137‑1 (MQ=255)
cAAGGCAACCCGGCGGC‑GTTAGTTTTTTTTTGTTGTCAGTTTGCTGATAAAACTCCCCAGATACTCGAGAAA‑AAAAATATACC‑AACCGTTTACGTTGTCGGTTACCCTTTAAGTACGGCTCCAATTAAAATAGaaaacgc > 2:601227/1‑136 (MQ=255)
aaGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAg < 5:504077/138‑1 (MQ=255)
aCCCGGCGGC‑GGTAGGTATTTTTGGTTATCAGTGGGCTGATAAAACACCCCAGATACTCGAGAAA‑ACAAATATAAC‑TAACGGTAACGTTGTCGGTTCCCCAGTAATTACGGCTCAAAATACCCTAGAAACAGCAattttt > 4:639609/1‑140 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 1:950075/140‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 7:965993/140‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 4:1055089/140‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 8:519453/140‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 4:36133/140‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGGTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 4:392689/140‑1 (MQ=255)
ggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCAt < 2:444999/140‑1 (MQ=255)
c‑gTTATTTATTTATGGTTCTCAGTTGTCTTATAAAACTCACAAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTTAAGTTGTCTGTTCCCCTTTCAGTCCGGCTCAAATTACAATCGAAACAGCATTTTTTGAAGCATca < 4:998473/140‑1 (MQ=255)
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AGCCAGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAA‑ACAAATATACC‑TACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCA > NZ_CP022686/3797342‑3797618
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
