Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F36 I0 R1
|
179 |
8076.5 |
8499890 |
98.3% |
8355391 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,797,481 |
T→G |
16.3% |
L130V (TTA→GTA) |
CIW80_RS19065 → |
LacI family DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,797,481 | 0 | T | G | 16.3%
| 209.3
/ 12.6
| 134 | L130V (TTA→GTA) | CIW80_RS19065 | LacI family DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (34/75); new base G (22/3); total (56/78) |
| Fisher's exact test for biased strand distribution p-value = 1.94e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 143 total aligned reads displayed.
GCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGC > NZ_CP022686/3797347‑3797614
|
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCgtttgttt > 5:231876/1‑139 (MQ=255)
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCgttagtta > 3:586652/1‑140 (MQ=255)
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCggtagttt > 1:592016/1‑139 (MQ=255)
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGATGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGTCgggagttt > 1:854445/1‑139 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGATATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCgttagttt > 8:200946/1‑137 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCggtatgtt > 7:533903/1‑134 (MQ=255)
ttATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGt < 4:586652/140‑1 (MQ=255)
tATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTGTTTTTTTTTGtt > 1:59818/1‑140 (MQ=255)
aTGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTGTTATTTTTGGttt > 3:596890/1‑139 (MQ=255)
tGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCAAGCTACTGCTTGGGTGTCATGAGTATAATCATCTCAAAGAAGCTGAAATTATGATGACGCTTCTTCAAGTCAACCCGGCGGCGTTAGTTAtatttttttat > 1:213076/1‑134 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCTGCGTTAGTTATTATTGTTTAT‑CAGtt > 2:864502/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTTTTTTTTGTTGT‑CAGtt > 1:752724/1‑140 (MQ=255)
gTTGCCGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCCGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTATTGATTTTTGGTTGT‑CAttt > 7:926589/1‑138 (MQ=255)
ttGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTGT‑CAGTTggg > 2:761873/1‑139 (MQ=255)
ggTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGTCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATaaaa < 2:1100780/140‑1 (MQ=255)
gTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAAc < 3:309807/140‑1 (MQ=255)
tGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACt < 5:198730/140‑1 (MQ=255)
tGCTTAATAAAAAAGAAATCCAGCGACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGATCT‑CAGTTGGCTGATAAAACt < 2:244832/140‑1 (MQ=255)
taataaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTTAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCAcc < 1:142829/140‑1 (MQ=255)
taataaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCAcc < 4:362928/140‑1 (MQ=255)
aaaaTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGa < 8:479362/138‑1 (MQ=255)
aTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGGTTCTTCAAGGCAACCCGGCGGCGTTTTTTATTTTTTGTTTTACGTTTGGGTG‑TAAAAATCACCAGaaaaaa > 1:1100656/1‑135 (MQ=255)
aTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTGTTTTTTTTGTTTGT‑CAGTTTGCTGATTAAACACACCAGATAc > 7:759253/1‑138 (MQ=255)
ttCCATCTACTGCTTGGGTGTGATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 4:170891/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTTTAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 3:782547/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCgag < 7:212971/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCgag < 8:568981/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCgag < 8:727101/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 2:264980/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 3:617747/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCGCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 1:598393/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGGGTCAAGAGTATAATCAGCTCCACGAAGCTGAAATTCTGATGACGCGTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCgag < 7:635701/138‑1 (MQ=255)
ccAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGaaaa < 3:151531/140‑1 (MQ=255)
gCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTTTTTTTTGGTAT‑AAGTTTGGTGCTTAAACTAACCAGATACTCGAGAAAACaa > 6:114753/1‑140 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACaaa < 1:504276/140‑1 (MQ=255)
gCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTATTTTTGGTTAT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtataa > 6:471057/1‑139 (MQ=255)
cTTGTGTGTCATGAGTATAATCAGCTCAAAGAAGGTGAATTTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTGCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 8:745442/138‑1 (MQ=255)
cTTGGGTGTCATGAGTTTAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 6:549189/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTTAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 5:1015988/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 7:290363/138‑1 (MQ=255)
ttGGGTGTCTTGAGTATAAGCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCGGGCGGCGTTAGTTATTTTTGGTTCT‑CATTTGGCTGATAAAACTCAACAGATACTCGAGAAAACTAATAtacct < 2:827490/140‑1 (MQ=255)
tGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTTTTATTTTTGTTTCT‑CAGTTGGCTGATAATACTCACCAGCTAAGAGACAAAACAAATAtaacta > 2:83380/1‑140 (MQ=255)
gggTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGGTGTTATTTTTGGTTAG‑AACTTTGCTGATAAAACTCACCAGCTACAGGACATAACAAATAtaccaac > 6:86875/1‑140 (MQ=255)
tgtCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTAT‑CAGTTGGCTGATAAAAATCACCAGATACTAGAGAAAACAAATAtacctacc > 7:759634/1‑138 (MQ=255)
tCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTGTTATTTTTTGTTGT‑GAGTTTGCTGATTAAACTCACCAGATAAACGAGAAAACAAATATACCTACCGTTa > 4:676309/1‑140 (MQ=255)
tCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGTTTTTTTTTGTTTT‑AAGTTGTCTGAGAAAACTAACCACAAACAAGTGAAAAAAAAAAAACCTAACggtt > 3:355902/1‑137 (MQ=255)
aTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGtt > 4:176174/1‑81 (MQ=255)
aTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGtt < 3:176174/81‑1 (MQ=255)
aTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTATTTTTTGGTCG‑CACTTGGGTGATAAAAAGGACCATATTCAAGAGAAAACCAATATACCGACCGTTTAc > 2:343293/1‑140 (MQ=255)
aTCAGCTCAAAGAAGCTTAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGt < 3:445758/140‑1 (MQ=255)
aTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGt < 6:655656/140‑1 (MQ=255)
aTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGt < 3:980772/140‑1 (MQ=255)
aTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGt < 1:730662/140‑1 (MQ=255)
tCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGTTATTTTTTGTTGT‑CAGGTGGCGGATTAAACTCCCCAGATACTCGCGAAAACAAATATAACTACCGTTTACGTTGTggg > 8:195501/1‑138 (MQ=255)
cAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTc < 5:1020980/140‑1 (MQ=255)
aGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGtt < 7:166611/138‑1 (MQ=255)
aGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGTGATTTTTGGTTGT‑CCGTATGGGGATTTAACACACCAGATACTCGAGCAAACAAAAATACCGAACCTTAAAGGTGTggggg > 7:284817/1‑136 (MQ=255)
aGCTCAAAGAAGCTGAAATTCTGATGACGCGTCATCAAGGCAACCCGGCGGCGTTAGTTTTTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTTTCGGtt < 7:673936/138‑1 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGGCGGTTGTTTTTTTTTGTTGT‑GAGTTGGGTGTTAAAACTGACCAGATACTCGGGCAAACAAATAATCCTACCGTTAACGTTGTCgggtgcc > 3:1041340/1‑135 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTTTTTTTGGGTCG‑CAGTTGGCTGATTAAACTAACCAGATACGGGAGAAAACAAATATACCTTCCGTTTACGTTGTCgggtgcc > 4:230883/1‑135 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTGATTTTTGGGTCG‑CAGTTGGCTGATAAAACGCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTcccc > 4:808567/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTGAGTTATTTTTGGTTCT‑CAGTTGGCTGATTAAACTCACCCTATAGTCCAGAAAACAAATAAACCAACACTAAACGTGGTCGGGTcccc > 6:845172/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGGTTTTTTTGGGTCT‑CAGGTGGCTGATAAATCGGCCCAGATACTCGAGAAAACCAATATAGCTACAGTTAACGTGGTCGGGTaccc > 2:883687/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTATTATTTTTTTGTGT‑AAGTTGGGTGATATAACGCACCAGATACTCGAGAAAAACAATATACCTACCGGTTACGTTGTGGGGTgccc > 4:732827/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTTTTTTTTGTTGT‑CAGTTGGCTGCTAAAACTCACCAGATACACCAGTAAACAAATATACCTACCGGTAAAGTTGTCGGTTgccc > 1:254635/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAAACCGGCGGAGTGTTTTTTATTTGGGTGT‑GAGTGTGCGGATAAAAAGAACAAAATACTGTGCAAAACAAATATAAATACCATTAACGGTGTCGGTTgccc > 4:992479/1‑140 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGTTTTTTTTTGTTGT‑CAGTTGGGGGGTTAAACTACACAGGTTATCGAGAAAACAAATATAACAACCGGTTAAGTTTTGGGTTgcc > 8:37139/1‑138 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGTTTTTTTTGGTTAT‑CAGTTGGGGGATAAAAATCCACAGCTACTCGAGAAAACAAATATAACAAACGGTAAAGTTGTAGGTTgcc > 7:184335/1‑138 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGATCGTATTTTTTGTTGT‑CAGATTGGTGATAAAACTCCCCCTATACGCGAGAAAAAAAAAATAACAACCCTTAAGCTTGACGGTTccccc > 4:292437/1‑139 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCAGGCGGCGTTAGTTATTTTTGGTTAA‑CAGTTGGCTGATAAAACTCACCAGATACACGAGAAAACCAATATACCAACCGTTAACGGTGTCGGTTccccg > 4:381296/1‑139 (MQ=255)
tCAAAGAAGATGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGTTTTTTTTTGGTAT‑CAGTTGGCGGATAAAACGCACCAGATACACGAGAAAACAAATAAAACAACCGTTAACGATGTGGGTTgcc > 7:785411/1‑138 (MQ=255)
atagacgCTGAAATTCTGATGACGCTTCTTCACGGCAACCCGGCGGCGTTAGTTATTTTTGGGTCT‑CAGTTGGCTGATAAAAGTCACGAGATCCTCGAGACAACAAATATAGCTCCGGTTAACGTTGTCGGTGCCCCt < 8:326149/136‑1 (MQ=255)
cTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTGT‑GAGTTTGCTGATAAAACTCACCAGATACAGGAGAAAACAAATATACCAACCGTTTACGTTGTCGGTTCCCCTTTCAGTGCg > 4:999928/1‑140 (MQ=255)
aaaTTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCgg < 7:60831/138‑1 (MQ=255)
aaaTTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTTTTTTTGGTTGG‑AAGTTTGCGGATTAAAAGCCCCAGATACTCGAGGAAACAAAAATACCAACCGTTTACGTTTTCGGTTACCCTTTGAGTCCgggg > 2:815584/1‑138 (MQ=255)
aagCTTATTCAAGGCAACCAGGCGGCGGTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACAAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCAt < 1:858067/138‑1 (MQ=255)
aCGCTTCTTCAAGGCAACCCGGCGGTGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCAt < 1:437105/140‑1 (MQ=255)
tcttcAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTAGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGaaa < 5:235640/140‑1 (MQ=255)
aCCCGGCGGCGTTAGTTTTTTTTGGTTGT‑CAGTTGGCTGTTAAAACAGACCACGTACGCGAGGAAACAAATATACCTACCGGTAACGGTGTCGGGTCCCCGTTAAGTCCGGGGCAAATTACCATCCAAACAGCAtatttt > 6:948092/1‑140 (MQ=255)
aCCCGGCGGCGTTAGTTATTTTTTGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTGCGTTACCCATTCAGTACGGCTCAAATATCCATCGAAAGAGCAtttttt > 4:22430/1‑140 (MQ=255)
cccTGCGGCGTTAGTTTTTTTTTGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACATATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTg < 2:988463/140‑1 (MQ=255)
cccGTCGGCTTTAGTTATTTTTTGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTg < 6:157694/140‑1 (MQ=255)
cccGGCGGCGTTTTTTATTTTTTGTTTG‑AAGTTGGCGGATAAAACTCACCCGATACACGAGAAAACAAATATACCTACAGGTAAAGTTGTGGGTTGACCTTTGATTGCGGGGGAAATTAACCTCGAAACAGCAttttttt > 2:777708/1‑139 (MQ=255)
cggcggCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCaaa > 8:989096/1‑114 (MQ=255)
gctgcgTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAAATACCTACCGTTAACGGTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 1:16284/137‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCT‑CAGTTTGCTGATAAAACTCACCAGATACTCGATAAAACAAATATACCTACCGTTAACGGTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATAGAAACAGCATTTTTTGAAGc < 3:611995/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCCCCAGCTACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 8:852545/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATCCCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 7:259838/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 5:765254/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 5:674415/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 5:485013/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 4:752478/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 3:611991/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 2:730498/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTGCT‑CAGATGTCTGATACAACTCTCCAGATTGTGGAGACATCAAATATACCTACCGTTAACGTCGTCGGGTCCCCTTTCAGTGCGGCTCAAATTTCCATCGAAACCGCATTTTTTGaatc < 5:968161/140‑3 (MQ=255)
gcggcgTTAGTTATTTTTGGGTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 7:898088/138‑1 (MQ=255)
gcggcgTTAGTTATTTTAGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCTGTTCGCCTTTCAGTCCGGCTCAAATTACCATCGAAACATCATTTTTTGAAGc < 6:614234/140‑1 (MQ=255)
gcggcgGTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGATAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 6:585322/140‑1 (MQ=255)
gcggcgGTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 5:513502/140‑1 (MQ=255)
ggcgTTAGTTATTTTTGGTTCT‑CAGTTCGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGGTGTCGGGTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 8:462926/138‑1 (MQ=255)
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GCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGC > NZ_CP022686/3797347‑3797614
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
