Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F35 I0 R1
|
157 |
6985.9 |
8006972 |
98.3% |
7870853 |
134.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,797,481 |
T→G |
17.4% |
L130V (TTA→GTA) |
CIW80_RS19065 → |
LacI family DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,797,481 | 0 | T | G | 17.4%
| 234.3
/ 13.3
| 135 | L130V (TTA→GTA) | CIW80_RS19065 | LacI family DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (18/90); new base G (22/4); total (40/95) |
| Fisher's exact test for biased strand distribution p-value = 9.59e-11 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 140 total aligned reads displayed.
CAGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCA > NZ_CP022686/3797345‑3797618
|
cAGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCgtt < 6:194440/138‑1 (MQ=255)
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCGTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCggtagttt > 7:432818/1‑139 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGGCgttaggtt > 1:760367/1‑135 (MQ=255)
cTTTATGCAGTCGGTGCAGCAGGTTCTTAATAAAAATGAATTGCTTATACTGCTTGGGTGTCATGAGTATTATCAGCTAAAAGAAGCTGAAATGCTGATGAAGCTTCTTCAATGCAACCCGGCGGAGTTAGTTATTTTTg < 8:234468/140‑1 (MQ=255)
aGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTtctc < 1:90416/138‑1 (MQ=255)
aGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAg < 8:395123/140‑1 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGtt > 8:692410/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACGGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGTCGTTATTTATTTTTGTGTCTCAGtt > 8:190609/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCAAGCTACTGCTTGGGTGTCATGATTATAATCAGCTCAAACAAGCTGAAATAATGATGCCGCGTCTGCACTGCAACCCGGCGGCGTATATTATTTTTGTTTCTTAGtt > 7:542586/1‑140 (MQ=255)
cGTTGCAGCAGGTGCGTAATAAAAATGAAATCCCTCGACTGCTTGGGTGTCCTGAGTATAATCAGCTCAAATAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGCTATTTATTTTTGGTTCTCAGt < 1:562014/138‑1 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTTTTTTTTGTGATCAGtt > 4:171613/1‑138 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGtt < 5:504438/138‑1 (MQ=255)
gTTGAAGCAGCTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGATCAAAGAAGCTGAAATTCTGATGAAGCTTCTTCAAGGCACCCCGTCGGCGGTACTTAATATTGGTtcaaattt > 4:588125/1‑132 (MQ=255)
ttGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTg < 4:452739/138‑1 (MQ=255)
cagcagGTTCTTAATAAAAAAGAATTCCAGATACTGCTTGTGTGTCATGAGTATAAGAAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCt < 2:122961/138‑1 (MQ=255)
gTGCTTAATAAAAATGAATTCAAGCTACTGCTTTGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATaaa < 2:227142/138‑1 (MQ=255)
ttcTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCGCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATaaaa < 5:377191/136‑1 (MQ=255)
tGCTTAATAAAAATGTATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATaaaa < 4:871487/138‑1 (MQ=255)
tGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATaaaa < 3:272852/138‑1 (MQ=255)
tGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATaaaa < 5:903262/138‑1 (MQ=255)
tGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGAAGACGCTTCTTCAAGGCAACCCGGCTGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATaaaa < 5:329178/138‑1 (MQ=255)
gCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTTTTTTTTTTGGTTATCAGTTGGCTGATaaaaa > 2:398992/1‑137 (MQ=255)
taataaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCa < 6:103942/138‑1 (MQ=255)
taaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGa < 7:864913/140‑1 (MQ=255)
aaaaTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGa < 3:471982/138‑1 (MQ=255)
aTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTGAGTTTTTTTTGGTTGTCAGTTGGGTGCTAAAAATCACCAGATaa > 2:887681/1‑137 (MQ=255)
aTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTATTTAATTTTGGTTGAGAATTGGCAGATAAAACACACCAGaaaa > 5:597157/1‑135 (MQ=255)
gAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTATTTTTTTTTGGTTGTCAGTTTGCTGATTAAACTCACCAGCTAcgc > 1:603070/1‑136 (MQ=255)
ttCCAGCTACTTCGTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCgag < 5:978452/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCgag < 1:398992/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCgag < 2:191688/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 7:36907/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 7:37623/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCGGATTAAACTCACCAGATAATCgag > 2:812640/1‑138 (MQ=255)
ccAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 6:111223/138‑1 (MQ=255)
ccAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 1:831979/138‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACa < 4:1015065/138‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACa < 6:554361/138‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACa < 1:206976/138‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACa < 2:122463/138‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATAAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGTCGGAGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACaaa < 7:88222/140‑1 (MQ=255)
cTACAGCTTGGGTGTCCTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACa < 2:418595/138‑1 (MQ=255)
gCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAatat < 6:687594/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGACGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 6:540830/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTATTTATTTTTGGTTATCAGTTTGGAGAAAAAAATCACCACATACTCGACAAAAAAAAtata > 2:340469/1‑138 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 8:414696/140‑1 (MQ=255)
cTTGGGGGTCATGAGTATACTCAGCTCAACGAAGCTGAAATTCTGATGACGCTTCTTCACGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 4:899396/138‑1 (MQ=255)
gtCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCg < 4:266348/138‑1 (MQ=255)
gtCATGAGCATAATCAGCTAAAAGACTCTGAAATTCTGATGACGCTTCATCAATGCAACCCTGCTGCGTTAGTGATTTTTGGTTCTCATTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCg < 6:877220/138‑1 (MQ=255)
aTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTGTTATTTTTGGTTATCGGTTTGCAGATAAAAAAAACCACATACAACACAAAACAAATAaacca‑a‑cactta > 6:391363/1‑133 (MQ=255)
gAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGt < 7:369163/140‑1 (MQ=255)
gAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGTTTTTTTTTGTTCAGAGTTTGCTGATTAAACACACCAGATACAACAGAAAACAAATAAACCA‑A‑CCGGTaaa > 3:558924/1‑137 (MQ=255)
aGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGtt < 8:856215/140‑1 (MQ=255)
tCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGTTTTTTTTTGTTATGAGGTGGGGGATAAAAATAACCAGATACTCGAGAAAACAAATATAACG‑ACCCGTAAACGtttgggtt > 7:166686/1‑134 (MQ=255)
cAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATCTACCT‑A‑CCGTGAACGTTGTCGGt < 4:26926/138‑1 (MQ=255)
cAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTGCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTc < 8:6020/140‑1 (MQ=255)
aGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGtt < 1:10296/138‑1 (MQ=255)
aGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTTTTTTTGGTTGTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTAgggt > 3:600440/1‑136 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGGTATTTTTGGTTGTCAGTTGGCTGATTAAACTCACCAGATGCTCGAGAAAACAAATTTAACT‑C‑ACGTTAACGTTGTCGGTTccc > 8:564441/1‑140 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTAt < 3:928725/58‑1 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTAt > 4:928725/1‑58 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTGTTTTTTTTTTTGGTGGAAGTTGGGTGATAAAACTCACACGAGTCTCCTGAAAACAAATATAACA‑A‑CCGTTAAAGGTGTAGGTTgcc > 4:421781/1‑138 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTATCAGTTGGCTGATAAAAATCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTTACGTTGTCGGGTcccc > 2:489998/1‑138 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGGTATTTTTTGTTGTAACTGTGCGGATAAAAAGAACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGATGTAGGTTaccc > 4:235685/1‑138 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGTTTTTTTTTGTTGGCCGTTGGCGGATAAAACACACCCGAATCAGGAGAAAACAAATATAACT‑T‑CCGGTTAAGTTGTCGGTTcccc > 4:129948/1‑138 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGTTATTTTTGGTTATCAGTTGGGTGATAAAAAGACACAGATACGAGAGTAAAAAAATATTACT‑T‑CCGGTTACGTTGTGGGTTgccc > 2:494627/1‑138 (MQ=255)
aaaGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCt < 1:967015/138‑1 (MQ=255)
aaaGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGGTCCCCttt < 7:500919/140‑1 (MQ=255)
aaaGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTTTTTTTGGGTCTCAGTTGGCGGATAAAACTCACCAGATTCTCGAGAAAACAAATATACCG‑A‑CCGGTTACGTTTTGGGTTacccc > 2:86885/1‑137 (MQ=255)
gAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTTTTATTTTTTTTTGTAAGTTGGCTGATAAAAATAAACAAATAAGCGAGAAAACAAAAATAACG‑A‑ACGTTAAAGTTTTGGGTTGCCCTTTAAGTGCg > 4:143887/1‑138 (MQ=255)
gAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGTTATTTTTTGGTATCAATTGGCGGATAAACCTCACCAGCAGCACGAGAAAACAAATATACCTAA‑CCATTAAC‑TTGTACGGTACCCTTTCAGTCCg > 2:763626/1‑138 (MQ=255)
aaaTTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCgg < 2:362781/138‑1 (MQ=255)
aaaTTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCgg < 2:367897/138‑1 (MQ=255)
gaCGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTATTTTTGGTTGTAAATTTGCTGTTTAAAATAAACACCTAATACAGAAAACAAAAATAACA‑A‑ACGTTAACGTTGTAGGTTGCCCTTTAAGAGCGGCGAAAATTaa > 2:695685/1‑137 (MQ=255)
ttcttcAAGGCAACCCGGCGGCGGTTTTTATTTTTGGTTGTGAGGTGGGTGGTAAAACTCAACAGATAAAAGAGCAAAAAAATATACCG‑A‑CCCGTAACGTTTTGGGGTCCCCAGTAACTCCGGCGCAAATTTCCAACg > 6:871796/1‑138 (MQ=255)
cttcAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGaa < 2:760367/138‑1 (MQ=255)
aaGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAg < 3:763420/138‑1 (MQ=255)
cccGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTg < 7:735468/140‑1 (MQ=255)
cccGGCGGCGTTAGTTATTTGTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTg < 8:353932/140‑1 (MQ=255)
ccGGCGGCGGTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGa < 7:152073/140‑1 (MQ=255)
gcggcgTTATTTATTTTTGGTTCTCAGTTGGCTTATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGATCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 1:970356/138‑1 (MQ=255)
gcggcgTTATTTATTTTTGGTTCTCAGTTGGCTGATAATACTCACAAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGTCTCAAATTACCATAGAAACAGAATTTTTTGAAGc < 8:877847/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAACCTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 1:435734/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 3:1011173/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 1:184484/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 2:603070/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 3:778383/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 4:836958/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 5:641933/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 5:797281/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 5:9415/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 8:121243/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 8:75901/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTATAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 2:627459/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGAGAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGTCTCAAATTACCATCGAAACAGCATTTTTTGaa < 1:627101/138‑1 (MQ=255)
gcggcgGTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 2:188953/138‑1 (MQ=255)
cggcgTTAGTTATTTTTGGTTCTCACTTGGCTGATAAAACACACCAGATAATCGCAAAAACAAATATACCA‑A‑CCGTTAACGTTGTAGGTTACCCATTCAGTCCGGGTCAAATTACCATCCAAACAGCAATTTTTTAACCa > 8:708099/1‑140 (MQ=255)
ggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 5:843965/138‑1 (MQ=255)
ggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 6:602823/138‑1 (MQ=255)
ttagttaTTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTTTAGGTTCCCCATTCAGTCCGGCTCAAATTACCATAGAAAAAGCATTTTTTTAAacaaca > 6:9415/1‑138 (MQ=255)
|
CAGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCT‑A‑CCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCA > NZ_CP022686/3797345‑3797618
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
