Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F13 I0 R1
|
203 |
11425.2 |
8793538 |
98.4% |
8652841 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,797,481 |
T→G |
12.4% |
L130V (TTA→GTA) |
CIW80_RS19065 → |
LacI family DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,797,481 | 0 | T | G | 12.4%
| 204.9
/ 2.1
| 120 | L130V (TTA→GTA) | CIW80_RS19065 | LacI family DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (29/72); new base G (15/3); total (44/76) |
| Fisher's exact test for biased strand distribution p-value = 1.81e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 127 total aligned reads displayed.
CAGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAA‑ATTACCATCGAAACAGCATTTTTTGAAGCAT > NZ_CP022686/3797345‑3797616
|
cAGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCgtt < 4:980045/138‑1 (MQ=255)
gCTCCCGCTTTATGTAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCgggag‑tt > 2:1037027/1‑140 (MQ=255)
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCggttg‑ttt > 1:375698/1‑139 (MQ=255)
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCggttg‑ttt > 1:1019533/1‑139 (MQ=255)
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTACAGCTACTGCTTGCGTGTCATGAGTATAATCAGCTCAAAGAATCTGAAATTCTGATGACGCTTCTTCAAGGCCACCCGGCGGCgttat‑tta > 7:363030/1‑140 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCggtag‑ttt > 3:787061/1‑137 (MQ=255)
ggatttATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTAtt < 4:632790/135‑1 (MQ=255)
cGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTAtttt < 1:453709/140‑1 (MQ=255)
tttATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑tttttttt > 3:709338/1‑138 (MQ=255)
tATGCCTTCGATTCAGCATGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGTGTGTCATGAGTATAATCAGCTCAAAGAATCTGAAATTCTGATGACGCTTCTTCAAGTCAACCCGGCGTCGTTAG‑TTATTTTTgg < 4:61828/138‑1 (MQ=255)
tATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGtt < 1:693337/140‑1 (MQ=255)
tATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAG‑TTATTTTTGGtt < 8:66802/140‑1 (MQ=255)
tATGCAGTCGTTGCAGAAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTAAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTgg < 4:61831/138‑1 (MQ=255)
gCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAG‑TTTTTTTTgggtt > 3:1023701/1‑135 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGGCGGTAG‑TTTTTTTTTGTTATCAttt > 1:1053932/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTT‑TTTTTTTTTGTTATCAGtt > 5:846105/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTG‑TTATTTTTGGTTGTAAGtt > 5:546921/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTTTTTTTTGTTATGAGtt > 2:94095/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAT‑TTATTTTTTGTTATAAGtt > 2:152562/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAT‑CTATTTTTGGGTCTAAGtt > 6:435221/1‑140 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCCACCCGGCGGCGTGAT‑TTATTTTGGGTTCTAAGtt > 4:583597/1‑138 (MQ=255)
ttGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGc < 5:915330/140‑1 (MQ=255)
gcagcaGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTg > 2:430705/1‑140 (MQ=255)
gcagcaGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCAGGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTG‑TTATTTTTTGGTATCAGGTGGCTg > 5:392530/1‑140 (MQ=255)
agcagGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTG‑GTTTTTTTGTTTTGCAGTTggggg > 3:481775/1‑135 (MQ=255)
gcagGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATa < 7:581363/140‑1 (MQ=255)
gcagGTGATAAATAAAACTGAATTCCAGCTACTGCCTGGGTTTCATGAGTATAATCAGCTCTAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATa < 7:581356/140‑1 (MQ=255)
gCTTAATAAAAATGATTTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGATGCTGAAATTCTGATTACGCTTCTTCAAGGCAACCCGGCGGCGGTAG‑TTATTTTTTGTTGAAAGTTGGCTGATGAAACta > 8:305438/1‑139 (MQ=255)
gCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTG‑TTTTTTTTGGTTGTGAGTTGGCTGATAAAACTc > 6:350745/1‑140 (MQ=255)
gCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTG‑TTATTTTTGGTTCTTAGTTTGCAGATaaaaa > 4:383294/1‑137 (MQ=255)
gCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTGAGTTTATTTTTGG‑TCTCAGTTGGGTGATaaaaaag > 1:758621/1‑137 (MQ=255)
ttAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATTAAGCTTCTTCAAGGCAACCCGGCGGCGGTAG‑TTTTTTTTGGTTATACGTTGGCTGATTAAAcaa > 3:251064/1‑136 (MQ=255)
ttAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAc > 8:758433/1‑140 (MQ=255)
taataaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAcc < 7:204409/140‑1 (MQ=255)
taaAAATGAATTCCAGCTACTGCGTGGGTGTCATGAGTATAATCAGCTAAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGa < 5:1061271/140‑1 (MQ=255)
aaaaTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TCATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATa < 5:80382/140‑1 (MQ=255)
aaaTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAG‑TTATTTTTTGTTTTGAGTTGGCGGTTAAAACACACCAGATaa > 1:437709/1‑139 (MQ=255)
aTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTTTTTTTGGTTCTGAGTTGGGGGTTAAAACTCACCCGATAcac > 1:144975/1‑138 (MQ=255)
gAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGTCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAAATCACCAGATACTCga < 2:527713/140‑1 (MQ=255)
ttCCATCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCgag < 3:498169/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATCATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAATACTCACCAGATACTCGAGaa < 6:954763/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCgag < 4:1017240/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 1:182999/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 2:1011017/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 1:957281/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 5:436531/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑GTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 2:334486/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 1:58369/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCGGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 7:854576/140‑1 (MQ=255)
atCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGCTGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAATCTCACCAGATACTCGAGaa < 8:932192/139‑1 (MQ=255)
tCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaaa < 8:856500/140‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATTATCAGCGCAAAGAAGCTGAAATTCTGAGGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACaaa < 7:709812/140‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGACGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACaaa < 6:837608/140‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTTAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACaaa < 1:792587/140‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACaaa < 6:756835/140‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGAAAAAACTCACCAGATACTCGAGAAAACaaa < 7:445190/140‑1 (MQ=255)
cTACTGCTTGGGGGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACaaa < 2:111577/140‑1 (MQ=255)
aCTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAC‑TTATTTTTTGTTGAAAGTTGGCTGATAAAAATCACCAGATACTAGATAAAACaaaaa > 2:415511/1‑138 (MQ=255)
gCTTGGGTGTCATGAGTATAATCAGATCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCAGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtac < 2:115494/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 3:48568/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 5:310653/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 6:957160/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 8:457270/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 1:777225/140‑1 (MQ=255)
gtCATGAGTATAATCAGATCATAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGtt < 6:502469/140‑1 (MQ=255)
tCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTT‑TTTTTTTTTGTTAGCAGTTTGCTGATAAAAAAAAACAGATAATCGAGAAAACAAATAtaccaacactta > 6:1025965/1‑135 (MQ=255)
tCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAG‑TTTTTTTTGGTTCTAAGTTTGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGttt > 6:741701/1‑139 (MQ=255)
tCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAG‑TTATTTTTGGTTATCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTa > 7:689788/1‑140 (MQ=255)
aTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAT‑TTAAATTTGGTTGTAAGATGGGTGATAAAACTCCCCAGATACACGAGAAAAAAAATATAACTAACGtatac > 6:119153/1‑136 (MQ=255)
tataATCAGCTCATAGAAGCTGAAATTCTGTTGACGCTTCTTCTAGGCAACCCGGCTGCGCTAG‑TTATTTTTGGTGGTCTGTTGGCTGATAAAACTCAACAGATACTAGAGAAATCAAATATACCTACCGTTAACGTTGt < 6:201797/140‑1 (MQ=255)
tataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAACAGATACTCTATAAAACAAATATACCTACCGTTAACGTTGt < 6:553054/140‑1 (MQ=255)
tataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAG‑TTATTTTTGGTTCTCAGTTGGGGGAGTAAACTCCCCAGATACTCGAGAAAACAAATATACCTACCGTTAAAGTTGt > 8:77373/1‑140 (MQ=255)
aTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGt < 6:182673/140‑1 (MQ=255)
aGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCGGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTcc < 7:39366/140‑1 (MQ=255)
aGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTcc < 5:578971/140‑1 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTG‑TTTTTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGCAAACAAATATACCTACCGTTTACGTTGTCGGTTccc > 2:591902/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTG‑TTATTTTTGGTTATAAGTTTGCTGATATAACTCACCCGATACTCGAGAAAACAAAAATACCTAACGTTAACGTTTTGGGTTgccc > 2:1018117/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGGGGATAAAACTCACCAGATACTCCAGAAAACAAATATAACGACCGTTTACGTTGTCGGTTcccc > 6:685734/1‑140 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAT‑TTATTTTTTGTTGTCAGTTGGGGGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGGTTACGTTGTCGGTTacccg > 2:505272/1‑139 (MQ=255)
aagCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTTTTTTTGGTTATCAGTTTGCTGATAAAACACACCAGATACACGAGAAAACAAATATAACTAACGTTAACGTTGTGGGTTCCCCTGTCa > 4:1025118/1‑138 (MQ=255)
cgcggAATTTCAGCTGACGCATCGTCAAGGCAACCCGGCGGCGTTAG‑TTCTTTTTGGTTCTCAGTTGGCGGATAAAACTCACCAGATACTCGAGAAAAGAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTc < 6:362564/136‑1 (MQ=255)
agCTGAACTTCTGATGACGCGTCTTCTATGCAACCCGGCGGCGTTAG‑TTCTTTTTGGCTCTCAGTTGTCTGATATAACTAACCATATTCTCGAGAAAACATATATACCTACCGTTAACTTTGTCGGTTCCCCTTTGAGTc < 6:651035/140‑1 (MQ=255)
agCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTc < 7:915821/140‑1 (MQ=255)
tgatgaCGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCaa‑a < 4:682589/138‑1 (MQ=255)
tgatgaCGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAA‑Att < 2:375698/140‑1 (MQ=255)
tgatgaAGCTTCTTCAAGGCAAGCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGGTGGCTGATAATCCTCACCAGATACTCGAGAATACAAATATACCTAGCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAA‑Att < 8:363030/140‑1 (MQ=255)
gatgaCGCTTCTTCAAGGCAACCCGGCGGCGTTTG‑TTATTTTTGGTTCTCAGTTGGCTGATTAAACGCACCAGCTACTCGAGAAAACAAAAATACCTAACGGTTACGTTGTGGGTTACCCTGTCAGTCCGGGGCAA‑Attt > 6:407186/1‑139 (MQ=255)
gaCGCTTCTTCAAGGCAACCCGGCGGCGGTTG‑TTATTTTTTGTTGATATTTTGCAGAAAAAAATAACCAGATAAAGGAGTAAAAAAAAATAAGAAACGTTTACGGTGTCGGTTCACCCTTCAGTACGGCTCAA‑AATaa > 4:922361/1‑137 (MQ=255)
aCGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAA‑ATTAcc < 3:267302/138‑1 (MQ=255)
tcttcAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAA‑ATTACCATCGaaa < 6:952364/140‑1 (MQ=255)
cAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAA‑ATTACCATCGAAACa < 4:1018994/138‑1 (MQ=255)
cccGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAA‑ATTACCATCGAAACAGCAttttt < 4:373137/138‑1 (MQ=255)
cccGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAA‑ATTACCATCGAAACAGCATTTTTTg < 8:555565/140‑1 (MQ=255)
cccGGCGGCGTTAG‑TTATTTTTGGTTATCAGTTGGCTGATTAAAAAGACCCGATAATCGAGAAAACAAATATACCAACCCTTAACGGTTTCGGTGGCCCGTTAACTACGGAGAAACTTTACCA‑CGAAACAGGAttttttt > 8:955851/1‑139 (MQ=255)
tcggcgTTAG‑TTAGTTTTGGTTCTCAGTTGTCTGATAAAACTCACCAGATACTCGATATAACAAATATCCTTCCCTTTAACTTGGGAGGTTCCCATTTAAGTGCGGCTCAA‑ATTACCCTCGAAATAGCAGTTTTTGAAGc < 8:454230/139‑1 (MQ=255)
gctgcgTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAA‑ATTACCATCGATACAGAATTTTTTGAAGc < 5:95648/137‑1 (MQ=255)
gcggcgTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAA‑ATTACCATCGAAACAGCATTTTTTGaa < 4:714285/138‑1 (MQ=255)
gcggcgTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCATTCAGTCCGGCTCAA‑ATTACCATCGAAACAGCATTTTTTGAAGc < 7:842050/140‑1 (MQ=255)
gcggcgTTAG‑TTATCTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATCCTCGAGACAACAAATATACCTACCGTTAACGTTGGCGGTGCCCCTTTCAGTCCGGCTCAA‑ATTACCATCGAAACAGCATTTTTTGaa < 4:277053/138‑1 (MQ=255)
ggcgTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAA‑ATTACCATCGAAACAGCATTTTTTGAAGCAt < 5:630621/140‑1 (MQ=255)
|
CAGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAA‑ATTACCATCGAAACAGCATTTTTTGAAGCAT > NZ_CP022686/3797345‑3797616
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
