Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F2 I0 R1
|
193 |
6708.0 |
8620653 |
98.5% |
8491343 |
136.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,797,481 |
T→G |
19.3% |
L130V (TTA→GTA) |
CIW80_RS19065 → |
LacI family DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,797,481 | 0 | T | G | 19.3%
| 179.5
/ 13.5
| 120 | L130V (TTA→GTA) | CIW80_RS19065 | LacI family DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (32/62); new base G (24/2); total (56/64) |
| Fisher's exact test for biased strand distribution p-value = 6.39e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 128 total aligned reads displayed.
GCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCA > NZ_CP022686/3797347‑3797618
|
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCGACCCGGCGGC‑gtta‑tttt > 7:755916/1‑139 (MQ=255)
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑gttt‑gttt > 5:829797/1‑139 (MQ=255)
cGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTAtttt < 4:443738/140‑1 (MQ=255)
cTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTAtttttt > 4:842774/1‑139 (MQ=255)
tGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTAAAGCTACTGATTGGGTGTAATGAGTATAATAAGCTCAAACAAGCTCAAAATCTTATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTATGTTTTTTTTgttat > 3:876937/1‑136 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTTCTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAggt > 4:745102/1‑138 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGCAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTGATTTTTGGTTCTCAGtt > 7:740154/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGGC‑GGGT‑GTTTTTTTTGTTTATCAGtt > 7:618219/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑GTTATTTTTTGTTATCAGtt > 3:522558/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGtt < 2:863238/140‑1 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTAAGtt > 3:530641/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTT‑TTTTTTTTTTGTGCTCAGtt > 2:914623/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTAAAGGCACCCCGGCGGC‑GGTA‑GTTATTTTTGtttttaattt > 4:262573/1‑133 (MQ=255)
tCGTTGCAGCAGGAGCTTAATAAAAATGAATACCAGCTACTGCTAGTGTGTCATGAGTATAATCAGCTAATAGAAGCAGAAATTCTGATGCCGCGTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTAAGtt > 6:781416/1‑140 (MQ=255)
ttGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTGTCAGTTggg > 4:1041184/1‑139 (MQ=255)
ttGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCGTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGc < 8:439676/140‑1 (MQ=255)
gcagcaGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑GTTTTTTTTGTTTGTAACTTGGGTg > 3:1034069/1‑140 (MQ=255)
ggTTCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGACGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATaaaa < 4:191208/140‑1 (MQ=255)
ggTGCTTAATAAATATGAATTCCAGCTACTGCTTTGGTGTCATGAGTATAATCAGCTAAAAGCAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATaaaa < 3:71456/140‑1 (MQ=255)
ggTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTGTCAGTTTGCTGATaaaa > 2:5946/1‑140 (MQ=255)
gTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGC‑GGTA‑GTTATTTTTGGTTATCAGTTGGCTGATaaaaa > 1:165615/1‑139 (MQ=255)
gTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑TTTATTTTTGGTTCTCAGTTGGCTGATAAAAc > 4:816476/1‑140 (MQ=255)
tGCTTAATAAAAATGAATTCCATCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACt < 3:747169/140‑1 (MQ=255)
tGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACTCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACt < 2:585541/140‑1 (MQ=255)
taataaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTT‑GTTTTTTTTTGTTGTGAGTTGGGTGATTAAAcaaccc > 1:443908/1‑135 (MQ=255)
taataaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTTTTTTTTGTTCTCAGTTGGGTGATAAAACTCAcc > 3:41457/1‑140 (MQ=255)
aataaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCTAGGCAACCCGGCGGC‑GTTT‑TTTATTTTTTGGTTGAAGTTGTCTGATaaaaaagcgca > 1:312110/1‑133 (MQ=255)
aaaaTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATa < 6:108739/140‑1 (MQ=255)
aaaTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑TGTATTTTTTGTTATAATGTGGCTGATAAAACTAACCAGATaa > 6:698882/1‑139 (MQ=255)
aTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATAcac > 4:649688/1‑138 (MQ=255)
ttCCAGCTACTGCTTGGTGGGAATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑TTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 8:307464/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGGTCAAAGAAGCTGATATTCTGATGACTCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTATGGTTCTTATTTGGATGATAAAACTCACCAGATACTCGAGaa < 4:829258/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 6:31179/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTATTTTTGTGTGTCAGTTGGCTGATAAAACGCCCACGATACACGACaa > 2:262130/1‑140 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTATTTTTGGTTGTCAGTTGGGTGAGAAAACTCACCAGATACTAGAGaa > 6:402152/1‑140 (MQ=255)
accAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTAGGCTGATAAAACTCACCAGATACTCGAGaaa < 3:1023336/139‑1 (MQ=255)
gCTACTGCTTGGGTGTCATGAGTATTATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCA‑ATACTCGAGAAAACaaa < 5:332195/140‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATACTCAGCTCAAAGAAGCGTAAATTCTGCTGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACaaa < 2:915549/140‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACaaa < 3:170904/140‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACaaa < 3:786851/140‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTGCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACaaa < 5:178791/140‑1 (MQ=255)
cTTGGGTTGCATGAGTATAATCAGGTCAAAGTAGCTGTAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGGTGGCTGATAAAACTCTCCAGATACTCGAGAAAACAAATAtacc < 3:513470/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 6:137278/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 1:1039600/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTGCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTTGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 4:69160/140‑1 (MQ=255)
ttGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacct < 6:703004/140‑1 (MQ=255)
ttGGGTGTCAAGAGTATAATCAGCTCAAAGAAGCTTAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacct < 7:971651/140‑1 (MQ=255)
tGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑TTTATTTTTGGTTATCAGTTGTCTGATAAAACTAACAAGATACTCAAGAAAACAAAtataacaa > 6:1058088/1‑136 (MQ=255)
tgtCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑t < 3:103236/140‑1 (MQ=255)
aGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTTTTTTTGGTTGTCAGGTGGGGGATAAAACTCACCACATACACGAGAAAACAAATATAACTA‑C‑CG‑GTAACGtt > 1:1095284/1‑140 (MQ=255)
tataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGt < 5:304785/140‑1 (MQ=255)
tataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GGTTTTTTTGGTTATCAGTTTGGGGCTAAAACTCAACAGATACTCGAGAAAACAAAAATACCAA‑A‑CG‑TTAAAGATGt > 4:707452/1‑140 (MQ=255)
tataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTT‑TTTTTTTTTGGGTGTGAGTTTGGGGTTTAAAATCACCAGCTACTAGGCAAACCAAATATTACGA‑A‑CG‑TTGACGgtgt > 1:416489/1‑140 (MQ=255)
tataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GGTTTTTTTGGTTGGGAGTTGGCTGATAAAAATCACCAGATACTGGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTgg > 6:1003361/1‑139 (MQ=255)
tataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGGT‑GTGATTTTTTGGTGGCAGTTTGGGGAGTAAACTAACCAGAGTCGCGTGAAAAAAAATATAACTA‑C‑CC‑GTAAGGtttt > 8:691943/1‑138 (MQ=255)
aaTCAGCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGGC‑GGGA‑GTTATTTTTGGTTTGAAGGTGGCGGCGAAAACACACCCGCAAGAAGAGCAAACAAATAAACCAA‑C‑CC‑TGAACGTTGTggg > 2:13861/1‑140 (MQ=255)
aaTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCCACCCGGCGGC‑TGTA‑GTTATTTTTGGTTGTCATGTGGCTGCTAAAAATAACCAGATAATCCAGCAAACAAATAAAACTA‑A‑CG‑TTTACggtttagg > 4:9561/1‑133 (MQ=255)
aTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑GTTATTTTTTGTTCTAAGTTGGGGGATAAAAAAACCCAGCTAAAAGAGAAAACAAAAATAACAA‑CACG‑TTAA‑ATTGTCggg > 5:834450/1‑139 (MQ=255)
tCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑TTTTTTTTTGGGTGTCAGTTGGGGGGTAAAAATCACCAGATTCACGGGAAAACAAATATTCCTA‑A‑CG‑TGAACGTTGTAGGtt > 1:570173/1‑140 (MQ=255)
cAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTc < 2:290766/140‑1 (MQ=255)
cgCTCAAAGAAGCTGAAATTCTGATTACGCCTCTTCAAGGCAACCCAGCGGC‑GGTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTcc < 8:474441/139‑1 (MQ=255)
aGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GGTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTcc < 4:491765/140‑1 (MQ=255)
gCTCAAAGAAGCTTAAATTCTGATGACGCTTCTTCAAGGCAACCCTGAGGC‑GGTT‑GTTATTTTTTGGTATCATTTGGGTGCTTAAACTCACCAGAGACTAGAGAAAAAAAATATTCATA‑G‑CT‑TTAAAGTTGTAGGttaac > 8:55355/1‑137 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑TTTTTTTTTTGTTGTAAGTTGGGGGGTTAAAATCACCAGAGACACGAGCAAAAAAATATAACAA‑C‑CC‑TTTACGGTGTAgggtgcc > 3:363093/1‑135 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTTGTTTTCAGTTGGGTGGTTAAAAAGACCCGATACAAGCTAAAACAAAAATAACTA‑C‑CG‑GTAAAGTTGTCgggtgcc > 3:226427/1‑135 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTT‑GTTTTTTTTTGTTGTCAGTTGGGTGATAAAACAGCCCCCATACTAGAGAAAACAAATATAACTA‑C‑CC‑GTAAAGGTGTCgggtgcc > 8:27762/1‑135 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTTTTTTTGGTTCGCAGTTGGGGGATAAAACTCCCCCGGTAAGAGAGAAAACAAATATACCGA‑C‑CG‑GTTAAGTTTTGGGTTacc > 7:184591/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTATTTTTGGGTATCAGTTGGGTGATAAAACTCGCCCGATACGGGGGAAAACAAATATACCGA‑C‑CC‑TTAACGTTGTCGGTTccc > 7:181772/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGAGGC‑GGTA‑GGTTTTTTTGGGTCGCAGTTGGGGGATAAAACTAACCAGATTCTCGAGAAAACAAAAATAACAT‑C‑CG‑TTAAAGGTGTCGGTTacc > 8:372316/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGCGGTTT‑GTT‑TTTTTTGTTGGCAGTTGGGGGATAAAACTACCCCGAAACTCGGGAAAACAAATATACCAA‑C‑CGATTACCGTT‑TCGGTTcccc > 8:151004/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑GTTTTTTTTTGTTGTCAGGTGGCTGTAAAAAATGACCCGATACAAGCGAAAACAAAAATAACAA‑C‑CC‑TTAACGGTGTAGGGTgccc > 5:474212/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTATTTTTGGTTGTCAGTTGGGTGATTAAACTCCCCAGATACGCGAGAAATAAAATATTACTA‑C‑CG‑TTTTCGGTGTCGGTTaccc > 8:924612/1‑140 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCATGGCAACCCGGCGGC‑GGTA‑GTTTTTTTTGGGTCTCAGGTGGGGGATAAAACTCCCCAGCTACGCGAGAAAACAAATATTCCTA‑A‑CG‑TGTACGTGTTAGGTTcccag > 7:240611/1‑138 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑TTTATTTTTTTTTTTCATTTGGGGTATTAAAAACACCAGAAAAGAGAGAAAACAAAAAAAACTA‑A‑CC‑TTTACTTTGTAGGTTgcccg > 7:574164/1‑139 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑GTTATTTTTGGTTGTCAGTTGGCTGATAAAAATAACCAGATACTAGAGAAAACAAATATAACTA‑C‑CG‑TTTACGTTGTCGGTTCCCCt > 7:840846/1‑140 (MQ=255)
agaagCTGAAATTCTGATGACGCTTCTTCAAGGAAACCAGGCGGC‑GTTA‑TTTATTTTTTGTTATAAATTGGGAGAAAAAAAACAACAGATACTACAGCAAACAAATATACCAA‑C‑CG‑TTAAAGTTGTAGGGTCACCattaa > 6:597955/1‑138 (MQ=255)
agCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTCCCCTTTCAGTc < 3:694255/140‑1 (MQ=255)
cTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGC‑GGTA‑GTTATTTTTGGTTCTCAGTTGGGGGATAAAACTCACCCGATACCCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTGGGTTCCCCGTTCAGGccc > 8:591602/1‑139 (MQ=255)
cTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTTTTTTTGGTTATCAGTCGGCTGATAAAACTCACCAGATTCACGAGCAAACAAATTTACCGA‑C‑CG‑TGTACGTTTTCGGTTCCACTTTACGTCCg > 6:572406/1‑140 (MQ=255)
aaaTTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCt < 1:868690/140‑1 (MQ=255)
tCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑GTTATTTTTGGTTATCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑GTTAAGTTGTGGGTTACCCTTTGAGTGCGGCACaaa > 4:681847/1‑140 (MQ=255)
tgatgaCTCTTCTTCAAGGCAACCCTGCGGC‑GTTA‑GTTATTTTTGGTTGTCAGTTGGCTGATAAAAGTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTCCCCTTTCAGTCAGGCTCAAAtt < 1:1075200/140‑1 (MQ=255)
aCGCTTCTTCAAGGCAACCCGGAGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCAt < 5:404755/140‑1 (MQ=255)
tcttcAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCGCAGATGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTCCCCTATCAGTCCGGCTCAAATTACCATCGaaa < 2:795064/140‑1 (MQ=255)
ggCAACCCGGCGGC‑GTTA‑GTTTTTTTTGGGTGTCAGTTGGCGGATAAAACACACCAGATAAGCGAGAAAACAAATATACCAA‑C‑CG‑TTAAAGGTGTAGGGTGCCCGTTGAGTCCCGCGCAAATTAACATCGAAACAGCAtt > 2:418408/1‑140 (MQ=255)
cccGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTg < 2:413748/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCCGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTT‑C‑CG‑TTAACGGTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGTCACAGCATTTTTTGAAGc < 3:418025/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTTGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 3:361387/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCATATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 7:611710/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 3:661504/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 3:631479/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 7:125782/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 3:836447/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 2:589975/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 5:233906/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 4:392520/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑A‑CG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 3:231884/140‑1 (MQ=255)
cggc‑gTTA‑GGTATTTTTTGTTGTCAGTTGGCGGATAAAACTCACCAGATACACGAGAAAACAAAAATAACAACC‑CG‑TTAA‑GTTGTCGGGTCCCCTTTCAGTCCGGCTCCAAATACCATAGCAACCACATTTTTTTAATCa > 3:219364/1‑140 (MQ=255)
c‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATca < 2:1095284/140‑1 (MQ=255)
ggtta‑gttaTTTTTTGTTATAAGTTGGCTTATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTCCCCATTCAGTCCGGCTCAAATTACCATCGAATCATCATTTTTTGAAGCATca < 5:597955/139‑1 (MQ=255)
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GCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTA‑C‑CG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCA > NZ_CP022686/3797347‑3797618
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
