Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F35 I0 R1
|
195 |
10216.4 |
8585726 |
98.3% |
8439768 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,734,380 |
T→G |
18.4% |
L229R (CTC→CGC) |
yafD → |
endonuclease/exonuclease/phosphatase family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,734,380 | 0 | T | G | 18.4%
| 231.7
/ 10.7
| 166 | L229R (CTC→CGC) | yafD | endonuclease/exonuclease/phosphatase family protein |
| Reads supporting (aligned to +/- strand): ref base T (14/114); new base G (31/4); total (48/118) |
| Fisher's exact test for biased strand distribution p-value = 2.58e-18 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 170 total aligned reads displayed.
GGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCCACAGGG > NZ_CP022686/3734241‑3734518
|
agacaggTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCt < 1:357505/135‑1 (MQ=255)
cccGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTGGGGCCGCCcgcgcg > 7:35107/1‑140 (MQ=255)
cGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTCCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTTGTCCCCCACTCgcg > 7:874714/1‑138 (MQ=255)
tgtgaTTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAATTGTCGCTGCGCCAGGTGCGTTTTACTGATGATGAGCGCCGTAGGGCGTTCGGCCGCACGCTCGAtt < 1:489545/136‑1 (MQ=255)
ggTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGa < 6:996025/138‑1 (MQ=255)
ggTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGAtt < 2:695659/140‑1 (MQ=255)
ggTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGAtt < 2:776402/140‑1 (MQ=255)
ggTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGAtt < 1:3344/140‑1 (MQ=255)
ggTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGAtt < 3:236956/140‑1 (MQ=255)
ggTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGGAGAAGGATGAACGCGTGATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATTAGCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGa < 6:1012647/138‑1 (MQ=255)
gTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTGGGGCGTTTGGCCGCCCGCTCGAt > 6:896435/1‑138 (MQ=255)
tCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGATGGAAATGTCGCTTCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTAGAtt < 6:871154/138‑1 (MQ=255)
aTTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTTGGCGCCCGCGCGAgttt > 5:875294/1‑138 (MQ=255)
ttATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTg < 5:523510/138‑1 (MQ=255)
tATGGCGGGAGATTTCAATGCCTGGATCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGACGTGAGGCGTTGGTGCGCCCGCGCGGATtttttt > 7:479185/1‑140 (MQ=255)
cGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGCCGCCCGCGCGATTTTGTTTtataa > 8:940509/1‑139 (MQ=255)
cGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGCCCCCCGCAAGATTTTGTTTTcaaa > 2:30265/1‑137 (MQ=255)
gggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑cc < 4:609334/140‑1 (MQ=255)
gggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGCCGCCCGCTCGATTTTGTTTTGTA‑ca > 3:801116/1‑139 (MQ=255)
gagaTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTGGGGGGTTTGGGCGCCCGCGCGAATTTTTTTTTTA‑ACgg > 7:361873/1‑139 (MQ=255)
gagaTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGGCGCCCGCGCGAGTTTGTTTTCTaaagg > 1:826243/1‑136 (MQ=255)
gaTTTCAATGCCTGGAGCCGTAGAAGGATGCACGCGTTATATCGCTGTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGGCGCCCGCGCGCGTTTTTTTTCTaagcggg > 8:418778/1‑134 (MQ=255)
ttCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGGCGCCCGCGGGCTTTTTGTTTGTA‑CCCTGGTcg > 1:1044603/1‑139 (MQ=255)
tCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCATGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTc < 5:611039/138‑1 (MQ=255)
gAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGGCGGCCGCTCGGTTTTGTTTTTTA‑CGGTGGGCTGAGAGTCAg > 6:467544/1‑138 (MQ=255)
cgCCGTAGTAGGAGGAACGCGTTATATCGCTTTGCGCGTGAAATGTCGCTGCGCCAGGTGCGTATTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGc < 6:1055055/137‑1 (MQ=255)
cgCCGTAGATGGATGAACGCGTTATATCGCTTTGCGCTGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGAATTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGa < 1:1006876/139‑1 (MQ=255)
cgCCGTAGAAGGATGAACGCGGTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGGCGGGCGGTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGa < 1:591401/139‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTCTATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGGGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCGCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGa < 7:58506/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGc < 6:280879/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGc < 5:718118/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGa < 7:191482/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGa < 4:547817/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAAGGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGGCTGAACGTCAGCGa < 2:801350/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATAGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGa < 4:1063349/140‑1 (MQ=255)
gCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCg < 5:350205/138‑1 (MQ=255)
ccGTAGAAGGATGAACGCGGTATAGCGCTGTGCGCGGGAAATGTCGCTGCGCCAGGGGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAg < 1:655865/140‑1 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGCCGCCCGCTGGTTTTTTTTTTATA‑CCGTGGTATGAACGTCATCGCAGcgt > 2:1021465/1‑138 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGc < 6:71693/138‑1 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGACGGGGGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCtt > 4:592932/1‑140 (MQ=255)
tAGAAGGATGAAAGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGGGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCAGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCtt < 7:720948/140‑1 (MQ=255)
gAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGCCCCCCCCGCGATTTTGTTTTGTA‑CCGTGGTCTGAACGTCCGCGaaacgg > 5:435832/1‑134 (MQ=255)
gAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGGTGGGCCCCCCCGCGCTGTTTTTTTTTA‑ACGTGGTCGGTAAGTGAGCGaaacgg > 5:176478/1‑134 (MQ=255)
ggATGCACGCGTTATATCGCTTTGCGTGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGAGCAGCGCCGTCTGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTa < 2:374277/140‑1 (MQ=255)
ggATGAACGCGTTTTATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCTGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTa < 8:849614/140‑1 (MQ=255)
ggATGAACGCGTTATATCTCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTa < 2:486448/140‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTg < 6:631907/138‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTa < 1:203750/140‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTa < 3:206411/140‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTa < 1:682187/140‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGGCAGCGAAGCTTCTGTa < 2:295884/140‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTATCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTa < 3:102323/140‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGGCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTa < 3:594580/140‑1 (MQ=255)
aTGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCGGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCCGCCGGGGGGTTTTGTTTTGTAGCCGTGG‑CTGTACGTCAGCGGAGGttgggtgcg > 1:635545/1‑133 (MQ=255)
tGAACGCGAAATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGCGCGGTTGGCCGCCCGCGCGATTTTTTTTTGGT‑CCGAGGGCAGAACGTCATCGAACCTGCTGtgcag > 2:444135/1‑136 (MQ=255)
aaCGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTTGCCGCCCGCGCGCTTTTGTTTTATA‑CCGAGGTCGGGTCGTGAGCGGAGCGTCTGTTCTggg > 4:285255/1‑139 (MQ=255)
ttATATCGCTTTGCTCGGGAAATGTCTCTGCGACAGGTGCGTTTTACTGATGTTCAGCGCCGGCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑TCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcgcg < 8:874714/140‑1 (MQ=255)
ttATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGGTGGGCGCCCGCTCGCTTTTTTTTTGTT‑ACGTGGTGTGAACGTCAGCGAGGCGTAGTTACTGGGTTcgcg > 7:440166/1‑140 (MQ=255)
ttATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGGTGGGCGCCCGCGCGAGTTTTTTTTATT‑ACGTGGGGTGGACGTCAGCGAGCCTTGTGTAGAGGtttggcg > 3:895508/1‑135 (MQ=255)
cGCTTTGCGCGGGAAATGGCGCTGCGCCAGGTGCGTTTTACTGATGATCCGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCGTCTGTACTGGGTACGCGCGCGTc < 4:219630/140‑1 (MQ=255)
cTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTTGGCGCCCCCGCGTTTTTTTTTTGTA‑CCGGGGGGTGGACGTCACCGAAGCGTGGGTTCTGGGTTAGCGCGCGTCCg > 2:200827/1‑140 (MQ=255)
tttGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGGTTTTGTTTTATA‑CCGTTGTGTGAACCTCACCGAACCGTCTGTACTGGTTACacccgcatacgc > 8:183332/1‑134 (MQ=255)
tttGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCGCGCTTTTGTTTTGTA‑ACGTGGGGTGAACGTCAGCGGAGCTTCTGTAATGGTTTCGCGCGCGTCCgc > 4:990834/1‑139 (MQ=255)
tttGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGCGCGGTTGGCCGCCCGCACGGGTTTTTTTTATA‑CAGGGGTCGTCACGGCAGCCAAGCGTACGTAGTGGTTACccgcgcggaccg > 7:670553/1‑134 (MQ=255)
gcgcGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATca < 8:505709/140‑1 (MQ=255)
cgGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGTTTGGCCGCCCCCGGGCTTTTTTTTTTTA‑CCGGGGTCTGAACGTCAGCGAAGCATCTGTACGGGTTAAGAGCGCGTCCgcacac > 6:155166/1‑133 (MQ=255)
ttCGCTGCGCCAGGTGCGTTTTACTGTTGATCAGCGCCGTCGGGCGTTTGGCGGCGCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGTTGTTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACTATCCGCt < 5:306097/137‑1 (MQ=255)
gTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCt < 5:405183/138‑1 (MQ=255)
gTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTAc < 4:709718/140‑1 (MQ=255)
gTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGCCGCCCGCGCGGTTTTGTTTTGTT‑CCGTGGGGGGAACGTCAGCGCAGCGTCTGTAAAGGGTACGCGCGCGTCCGGGCACAAACCGcaaa > 4:647524/1‑137 (MQ=255)
gatGCGCAAGGTGAGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCAGCTCGATTTTGTTTTCTA‑CCGTGGGCTGAACGTGAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCg < 2:1051551/138‑1 (MQ=255)
ccAGGTGCGTGTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATGTTGTTTGCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTGGAAt < 4:108408/140‑1 (MQ=255)
cAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGaa < 5:145908/138‑1 (MQ=255)
cAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAAtt < 2:5118/140‑1 (MQ=255)
cAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAAtt < 3:152030/140‑1 (MQ=255)
tGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGt < 3:916926/140‑1 (MQ=255)
tttACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTccc < 6:875294/138‑1 (MQ=255)
ttACTGATGATCCGCGCAGTCGGGCGTTTGGCTGCCCGCTCGAATTTGTTTTCTA‑CCGTGGTCTGATCGGCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACACTCCGCTACTCGTTGAATTCAGTCCCGGc < 8:270814/140‑1 (MQ=255)
atgctCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGGTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATGCAGTCCCGGCAAGCCt < 3:90321/140‑1 (MQ=255)
tgatCATCGCCGTCGGGAGTTTGTCCGCCCGCTCGTTTTTGATTTCTA‑CCGTGTTCTGAACGTCAGCGAAGCTTCTGTAATGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGcc < 5:468194/138‑1 (MQ=255)
tgatCAGCGCCGTCGGGCGTTTGGCCGCACGCTCGATTTTGTTTTCTA‑CCGTGGGCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGcc < 6:407878/138‑1 (MQ=255)
gatCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCt < 6:388438/138‑1 (MQ=255)
tccgtgcCGTCGGGGGTTTGGCCGCCGGCTCTATTTTGTTTTCTA‑CGGTGTTCTTAACGTATGCTATGCTTATGTAGTGGTTACGCGCGCTTCCGATAAAAATCCGATACTCTTTTAATTAAGACCCGGAAAGCCTtata < 2:1069356/135‑1 (MQ=255)
aGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaa < 1:974696/140‑1 (MQ=255)
aGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaa < 8:332290/140‑1 (MQ=255)
aGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaa < 2:114421/140‑1 (MQ=255)
aGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaa < 4:718615/140‑1 (MQ=255)
cGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCGTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaataa < 6:7176/138‑1 (MQ=255)
gcttttGGCCTCCCGCTCGATGTTCTTTTCAT‑CCTTGTTTTGACCGTGAGAGAAGCGTCTGTACTGGTTACGCGCGCTTGGTATCATCATCCGCTCATCCTTGATATCAGTCCCGGAAATCCTGATATATAAGGTATGTc < 8:510192/137‑1 (MQ=255)
gCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTc < 4:249372/140‑1 (MQ=255)
gCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTc < 3:990834/140‑1 (MQ=255)
gCGGTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTc < 1:705654/140‑1 (MQ=255)
cGTTTTGCCGCCCGCGCGATTTTTTTTTTTA‑ACGTGGTCTGAACGTCAGCGAAGCTTCTGTACTTGTTAAGCGCGCGTGCGATCACAATCCGCTACTAGTTGAATTAAGTACCCGCAAGCCTGATAAATAAAGTATTTcc > 8:768788/1‑139 (MQ=255)
ttGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGt < 3:516340/140‑1 (MQ=255)
ttGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTGCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAggg < 3:376824/140‑2 (MQ=255)
gcgcgcTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCca < 4:87564/137‑1 (MQ=255)
gcccgcTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGc < 6:351917/138‑1 (MQ=255)
gcccgcTCGATTTTGTTTTCTA‑CCGTGGGCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTTATAAATAAGGTATGTCAGGTcgtgaa < 2:663425/140‑6 (MQ=255)
gcccgcTCGATTTTGTTTTCTA‑CCGTGGGCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGAAAGCCTGATAAATAAGGTATGTCAGGTCTGCca < 8:583482/140‑1 (MQ=255)
gcaagcTCGATTTTGTGTTCTA‑CAGTTGTATGATCGTCAGCTAAGCTTCTGTATTGGTTAAGCGAGCTTCCTATCACAATACGCTAATCGTTTAATTAAGTCCCGGCAAGCCTGATAAATAAGGTATGTAAGGTCTGCca < 7:742442/136‑1 (MQ=255)
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GGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTA‑CCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCCACAGGG > NZ_CP022686/3734241‑3734518
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
