Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F35 I0 R1
|
195 |
10216.4 |
8585726 |
98.3% |
8439768 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,604,564 |
G→T |
15.6% |
intergenic (+80/‑151) |
lpxC → / → secM |
UDP‑3‑O‑acyl‑N‑acetylglucosamine deacetylase/secA translation cis‑regulator SecM |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,604,564 | 0 | G | T | 15.6%
| 245.2
/ 15.7
| 110 | intergenic (+80/‑151) | lpxC/secM | UDP‑3‑O‑acyl‑N‑acetylglucosamine deacetylase/secA translation cis‑regulator SecM |
| Reads supporting (aligned to +/- strand): ref base G (2/89); new base T (17/2); total (19/91) |
| Fisher's exact test for biased strand distribution p-value = 7.27e-16 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 112 total aligned reads displayed.
TCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATACGATCGGG > NZ_CP022686/3604426‑3604703
|
tCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTATCCGGCCAGGTGCACCAGTCGGTtttgtttgt > 4:560717/1‑139 (MQ=255)
cgacgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTtat < 2:672158/140‑1 (MQ=255)
cgacgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTtat < 8:263970/140‑1 (MQ=255)
gacgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGACGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTGTTTTTTTTTATTTtata > 8:423162/1‑140 (MQ=255)
acgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTGTTTTTTTTAATTTTATaa > 1:645503/1‑140 (MQ=255)
cgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTGTTTTTTTGTATTTTTTaat > 4:111561/1‑139 (MQ=255)
cgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTGGTTTTTTTTAtttttttat > 7:728277/1‑135 (MQ=255)
cgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGGGGTTTTTTTTATTTTTTaat > 1:1078622/1‑139 (MQ=255)
cAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGTATTTTTTaaa > 6:546844/1‑137 (MQ=255)
cAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAagag < 7:977771/140‑1 (MQ=255)
cAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAagag < 1:583395/140‑1 (MQ=255)
cAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAagag < 3:1049248/140‑1 (MQ=255)
cAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTGGTTTTTTTTATTTTTTaaa > 5:152146/1‑137 (MQ=255)
gAACTGCCGTTGGCCTTCAACGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCt < 8:511291/140‑1 (MQ=255)
ccGTTGGCCTTCAAAGCGCCTTCAGCCGTACTTGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATaaaa < 7:94336/140‑1 (MQ=255)
ccGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTGTTTTTTTTTTTTTTATAATAGAGATaaaa > 8:783388/1‑140 (MQ=255)
ccGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTGTTTTTTTTTATTTTTTTATAGGGATaaaa > 7:120751/1‑140 (MQ=255)
ttGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAAc < 4:374860/140‑1 (MQ=255)
ttGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAAc < 4:398535/140‑1 (MQ=255)
ttGGCCTTCAAAGCGCCTTCAGCCGTACTCGCATAACTACATTTATACTGACGTATAAAATTCGAATGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTGGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAAc < 3:80961/140‑1 (MQ=255)
gCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGt < 8:164385/140‑1 (MQ=255)
ccTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTGTTTTTTTTTATTTTTTAATAGCGATAAAAAAcag > 6:919255/1‑136 (MQ=255)
ccTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTGGTTTTTTTTAGTTTATAATAGGAATaaaaaaaaatg > 8:376339/1‑135 (MQ=255)
ccTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGAACTCTCTCCGGCCAGGTGAACCAGTCGTGTGTATTTTAAATTTTTAATATATATtaaaaaaag > 5:899324/1‑135 (MQ=255)
ccTTCAAAGCGCCTTCAGCCGGACTGGCATAACGCCATTTATACTGTCGTATAAAATTCGCCTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTGGTGTTTTTTATTTTTTATTACCTGTAAAAAAccc > 6:196632/1‑136 (MQ=255)
tCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACGGGCAAATCTGGCACTCTCTCCGGCCAGGTGTCCCAGTCGGGTGTTTATTAATTTTTTATGACATAGAAAAAAAGGtcttg > 7:118090/1‑136 (MQ=255)
aaaGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTGTTTTTTTTGATTTTTTAAGATTAAAAAAAAACCGTgggc > 6:775604/1‑135 (MQ=255)
aaGCGCCTTCAGCCTTACTGGCATAAAGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGaa < 5:451162/138‑1 (MQ=255)
aaGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACg < 4:164117/140‑1 (MQ=255)
aaGCGCCTTCAGCCGTACAGGCATAACGAGATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCCCTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACg < 3:7396/140‑1 (MQ=255)
cgcCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTg < 4:462004/140‑1 (MQ=255)
ccTTCAGCCGTACTGGCATAACGACATTTATACTGGCGTATAAAATTCGACTGGCAAATCTGGCACGCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTg < 6:866598/138‑1 (MQ=255)
cGTACTGGCATAACGACATTTTTACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAg < 1:131081/140‑1 (MQ=255)
cGTACTGGCATAACGACATTTATACTGTCGTATAATATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTa < 5:550604/138‑1 (MQ=255)
cGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAg < 2:32801/140‑1 (MQ=255)
cGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAg < 1:435844/140‑1 (MQ=255)
cGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAg < 2:764938/140‑1 (MQ=255)
gTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGc < 3:495215/140‑1 (MQ=255)
tACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCa < 4:519805/140‑1 (MQ=255)
tGGCATAACGACTTTTATACTGTCGTATAAAAATCGACTGGCAAATCTGGCCCTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACtt < 8:244718/140‑1 (MQ=255)
tAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACg < 7:375627/140‑1 (MQ=255)
tAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACg < 4:165117/140‑1 (MQ=255)
tAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACg < 4:316411/140‑1 (MQ=255)
tAACGAAATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACg < 1:173804/140‑1 (MQ=255)
aaCGACATTTTTAATGTCTAATAAATTACGACTGG‑AAATCTGGCACTCTCTCCGGCATGTTTAACCATTGTTTTTTTTTTTAATTTTATAATAGATATAAAAAACGGTGCTAACGCTGTTTTATTAAGCACTTTTACGca < 2:727655/140‑1 (MQ=255)
aCGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACg < 5:653190/138‑1 (MQ=255)
aCGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACg < 6:141190/138‑1 (MQ=255)
aCGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGca < 3:409376/140‑1 (MQ=255)
aCGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGca < 3:111561/140‑1 (MQ=255)
aCGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGAGAACGCTGTTTTCTTAAGCACtttttagaa < 2:330972/140‑6 (MQ=255)
aCGACATTTATACTGTCGTATAAAATTCGACTGGCAAAACTGGCACTCTCTCCGGCCAGGTGAACCAGGCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACATTTACGca < 7:781269/140‑1 (MQ=255)
cGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGcac < 3:129595/140‑1 (MQ=255)
cGAAATTTATACTGTCGAATAAAATTCGACTGTCAAAGCTGTCACTCTCTCCGGCCATGTGAACCAGTAGTGTTTTTTTGAATTTTATAATAGCTATAAAAAACGGTGCGAAAGCTGTTTTCTTAATCACTTTTACGcac < 4:15192/140‑1 (MQ=255)
aTTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTGTTTTTTTTTTTTTTTTTAGAGCGATAAAAAAACGTGGGGACGCGGGTTTGTTATGCACTTTTAAGGACAAca > 3:79331/1‑139 (MQ=255)
ataCTGTCGTATAAAAAGCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGGGAACCAGTCGTTTTTTTTAGAAATTTATAAGAGCTCTAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATc < 7:737661/140‑1 (MQ=255)
gTCGTATAAACTTAGACTGGCAAATCTGGCACGATCTCCGGCCAGGTGAACCAGTAGTTTTTTTTTGAATTTTATAATAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCAt < 4:475659/140‑1 (MQ=255)
gTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCAt < 2:205066/140‑1 (MQ=255)
tCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTGGTTTTTTTTTTTTTTTATTAGCTATTAAAAACGGTGGGGACGGCGTGTTGTTAAGACCATTTAAGCGCAACATATATTCagt > 4:264746/1‑138 (MQ=255)
cGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTc < 4:745595/140‑1 (MQ=255)
ataAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTg < 8:584226/140‑1 (MQ=255)
aaaaTTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCt < 2:585512/140‑1 (MQ=255)
aTTCGACTGGCAAATCTGGCACTCTCTCGGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTACCTTCATTCGTGCtgtg < 3:293073/140‑1 (MQ=255)
aTTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCtg < 6:529647/138‑1 (MQ=255)
aTTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCtg < 5:927750/138‑1 (MQ=255)
aTTCGACTGGCAAATCTGGCACCCTCTCCGGCCAGGGGAACCAGTCGTTTTTTTTTGAAATTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCtgtg < 7:157724/140‑1 (MQ=255)
aTTCGACTAGCAAATCTGGCACTCTCACCGGCCAGGTGTACCACTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCtg < 5:893013/138‑1 (MQ=255)
cTGGCAAAGCTGGCACTCTCTCCGGCCAGGTTAACCAGTCGTTTTTTTTTGAATTTTATAATAGCTATAAAAAACTGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTc < 7:457381/140‑1 (MQ=255)
tGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCa < 1:96378/140‑1 (MQ=255)
ggCAAATCTGGAACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTc < 6:229646/138‑1 (MQ=255)
aTCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTa < 2:18466/140‑1 (MQ=255)
tCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTa < 4:812987/140‑1 (MQ=255)
tCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTa < 1:377668/140‑1 (MQ=255)
tCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTa < 3:791387/140‑1 (MQ=255)
tCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCAATTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCtt < 5:672846/138‑1 (MQ=255)
tCTGGCACTCTCTCCCGTCAGGTGAACAAGTCTTTTTTTTTTTAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCtt < 5:618393/138‑1 (MQ=255)
cACTCTCTCCGGCCAGGTTAACCAGTGGTTTTTTTGTGAATTTTATAAGAGCTATAAAAAACGGGGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGAt < 2:1067038/140‑1 (MQ=255)
cACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGAt < 3:163110/140‑1 (MQ=255)
cACTCGCTCCCGGCAGTGGAACTAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTGTAATg < 5:108497/138‑1 (MQ=255)
cGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTtgt < 4:79331/140‑1 (MQ=255)
ggCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTtg < 5:775604/138‑1 (MQ=255)
ggCAAGGTGAACCAGTCGTATTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGGGGACTTCAGGCTTTAATGATAAGATTtgtg < 7:995725/140‑1 (MQ=255)
ccAGTTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTtgtg < 5:136387/138‑1 (MQ=255)
ccAGGTGCACAAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAACCGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTtgtg < 5:252834/138‑1 (MQ=255)
ccAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAATAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTtgtg < 5:136385/138‑1 (MQ=255)
ccAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTtgtg < 5:658081/138‑1 (MQ=255)
ccAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTtgtg < 5:260840/138‑1 (MQ=255)
ccAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTgcg < 1:240351/140‑1 (MQ=255)
ccAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTgcg < 2:1095813/140‑1 (MQ=255)
ccAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTgcg < 3:358778/140‑1 (MQ=255)
ccAGGGGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGCTGCGAACGCTGTTTTCATAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGAAAAGATTTGTgcg < 3:90167/140‑1 (MQ=255)
aGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCt < 7:819230/140‑1 (MQ=255)
aGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCt < 1:792594/140‑1 (MQ=255)
aaCCATTCGTTTTTTTTTGAATTTTATAATAGATATAAAAAACGGTGCTAACGATGTTTTCTTAAGCACTTTTACGAACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCTCTAAATa < 1:980334/140‑1 (MQ=255)
aaCCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCTAAATa < 4:839663/140‑1 (MQ=255)
tttttttttGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAAt < 4:207126/140‑1 (MQ=255)
ttttttttGAATTTTATAAGAGCTATAAAAAACGGTGCGAACTCTGTTTTCTTAAGCACTTTTACGCACTACTTATCTTCATTCGTGCTGTGGACTTCATGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATa < 7:100652/140‑1 (MQ=255)
ttttGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATACGAt < 7:495130/140‑1 (MQ=255)
tttGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATACGATc < 4:52432/140‑1 (MQ=255)
tttGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATACGATc < 3:529020/140‑1 (MQ=255)
gAATTTTATAAGAGCAATAAAAAACGGTTAGAACGATTTTTTCGTAAGCAATTTTAAGCACAACTTATCTTCATTCGTGCTGTGGACTTCATGCTTTAATTATAAGATTTGTGCGCTAATTAAGTTGGAATACTAtagtg > 4:1009697/1‑136 (MQ=255)
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TCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCCGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTACGCACAACTTATCTTCATTCGTGCTGTGGACTTCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATACGATCGGG > NZ_CP022686/3604426‑3604703
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
