Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F13 I0 R1
|
150 |
9496.0 |
7621532 |
98.4% |
7499587 |
136.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,769,196 |
A→C |
15.1% |
F47C (TTT→TGT) |
rarD ← |
EamA family transporter RarD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,769,196 | 0 | A | C | 15.1%
| 216.8
/ 13.1
| 117 | F47C (TTT→TGT) | rarD | EamA family transporter RarD |
| Reads supporting (aligned to +/- strand): ref base A (79/18); new base C (2/18); total (81/36) |
| Fisher's exact test for biased strand distribution p-value = 1.77e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 137 total aligned reads displayed.
GCCCAGATAAACAGTAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCAT > NZ_CP022686/2769058‑2769335
|
gCCCAGATAAACAGTAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑CCCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGaaaaa > 4:164255/1‑140 (MQ=255)
gCCCAGATAAACAGTAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGaaaaa > 5:388441/1‑140 (MQ=255)
ataaaaaCATTCGCCTTTTGCCGCAAATCAGCACGTCAGAGACTGCTAGTAAAAAATTTTTGTTTGGCGTCTGAATCAGCGTTTTTAAATAGG‑CCCAC‑TGGCGCAAAATGCTCATCAGCACCACAAAAATCAAAAACGAc < 2:719207/136‑1 (MQ=255)
aGATAAACAGTAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTAATGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACgcc > 6:64137/1‑138 (MQ=255)
cAGTAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCa > 3:243437/1‑140 (MQ=255)
cAGTAGCAAGTTGCCGCCAATCAGCACGGCAGAGCCTGCCAGCATAAAAATTTTCTGAGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACAACAATATACCAAAACTCCCAGATCa > 6:170609/1‑140 (MQ=255)
tAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCCCCACCATAAAGAAAAACGACCAGATCAcgc > 6:248106/1‑140 (MQ=255)
acccAGTTGCCCCAAACCCCCACGGCAGAGACTCCCAGCAAAAAAATTTGCTGGGGCGGCGTAAGCCGCTTTTTAAAATCGC‑ACCAC‑TGGCGGAAAATGCGCATCAGCACCACCATAAACAAACACGACCAGATCAcgcg < 2:704694/138‑1 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCCC‑TGGCGGCAAATGCTCATCCGCACCCCCATAAAGAAAAACGCCCAGATCACGCGa > 6:389827/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCAcgcgg > 5:14624/1‑139 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGa > 4:365481/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGa > 4:78444/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGa > 6:456692/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGa > 2:596140/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑AACAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGa > 8:800871/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGAATTCCATCATATAAATTTTCTGTGGCGTCTGAATGAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCAACAGCACCACCATAAAGAAAAACGACCAGATCAcgcgg > 4:900986/1‑139 (MQ=255)
aGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGc > 4:160848/1‑140 (MQ=255)
ttGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGt > 1:36442/1‑140 (MQ=255)
ttGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGt > 5:553900/1‑140 (MQ=255)
ttGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGt > 3:222609/1‑140 (MQ=255)
ccgccAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAg > 3:866015/1‑140 (MQ=255)
ccgccAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACAATAAAGAAAAACGACCAGATCACGCGATGCGTCAg > 7:358946/1‑140 (MQ=255)
gccAATCAGCCCGGCAGAGACTGCCAGCATAAAAATTTTCTGAGGCGTCTGAATCAGCGTTTAAAAAAAGG‑ACCAC‑TGGCGGCAAATGAACATCAGCACCACCATATAAAAAAACGCCCACATCACGCTAAGCTTCAGGa > 1:237826/1‑140 (MQ=255)
gccAATCAGCACGGCAGCGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGCAACCCGACCAGATCACGCGATGCGTCAGGa > 6:386409/1‑140 (MQ=255)
tCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCa > 1:343275/1‑140 (MQ=255)
cccGGCAGACACTGCCAGCATAAAAATTTTATGGGGCGTCTGAATCCGCTTTTTAAAATCGG‑ACCAC‑TGGCGCAAAATGCTCATCAGCACCCCCAAAAATAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATcgg < 4:75881/138‑1 (MQ=255)
cAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAACAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGc > 3:632233/1‑140 (MQ=255)
tgagcCTGCAGGCATAAAAATTTTGGGTGGGGGCTTAATCTGCTTTTTTAAAAAGG‑TCACG‑TGGGGGCAATTGCTATTCAGAACCACGATAAATAAAAACGACCAGATCACTCGATGCGTCAGGATCTCATCGGCGGGCa < 4:193573/139‑1 (MQ=255)
ggagaCTGCCAGAATAAAATTTTTTTGTGGGGTGTTAAGCCGAGTTTTTTATTTGG‑CCGAT‑TGGGGGAAATGGTTCATAACCTCCTCAATAATCATACACGACCAGAGCACGCGATGCGTCAGGATCTCATCGGCTGGCa < 2:774585/139‑1 (MQ=255)
ctagaCTGCCAGAAAAAAATTTTTCTGTGGGGTCTTAAGCAGAGTTTATAAATCGG‑CCCAC‑TGGCGGAAAATGCTCATCACCACCACAATAAAAAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCa < 1:874042/138‑1 (MQ=255)
atacaCTGCAAGAATAAATTTTTTCTGTGGCGTTTTATTCCTGTTTTTTAATTCGT‑ACCCC‑TGGCGTCAAATGTTATTCCCCACCAATATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCa < 1:267915/136‑1 (MQ=255)
agatcatGCAAGCATAAAAATTTTCTGTGGCGGCTTAATCAGCTTTTTTAAATCGG‑ACCAC‑TGGTGTAAAATGCGCATCACCACCACCAAAAACAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCa < 8:635665/134‑1 (MQ=255)
agagACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCa < 4:875679/140‑1 (MQ=255)
agacACTGCCAGAAAAAAAATTTTCTGGGGCGTCTTAATCAGCTTTTTTAAATAGC‑ACCCC‑TGGCGGAAAATGCTCATCAGCACCACCATAAACAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCa < 2:235820/140‑1 (MQ=255)
tgaCTGCCAGCATAAAATTTTTCTGGGGGGTCGGAATCTGGGTTTTTAAATAGC‑ACCAC‑TGCCGGAAATGGCTCATCCCCCCCCCAATAAAGACACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACg < 6:235268/139‑1 (MQ=255)
agaCTGCCAGAATAAAAATTTTGTGGGGCGTCTTAATCAGCGTTTTAAAATATC‑CCCAC‑TGGCTTAAAATGCTAATAACCACCACAATAAATAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACg < 8:358946/140‑1 (MQ=255)
aCTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGCCCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACgta > 3:48428/1‑140 (MQ=255)
aCTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGCTCACGCGATGCGTCAGGATCTCATCGGCGGGCCCgta > 6:497055/1‑140 (MQ=255)
gCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCCCCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACgtagta > 4:272478/1‑140 (MQ=255)
gCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGCCCAGATCCCGCGATGCGTCAGGATCTCATCGGCGGGCACgtagta > 8:612750/1‑140 (MQ=255)
gCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACgtagta > 4:900828/1‑140 (MQ=255)
gCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACgtagta > 2:34706/1‑140 (MQ=255)
gCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACgtagta > 6:547062/1‑140 (MQ=255)
gCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGGCAGGATCTCATCGGCGGGCACgtagta > 7:170756/1‑140 (MQ=255)
ccAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTaa > 8:197113/1‑140 (MQ=255)
ccAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTaa > 7:529472/1‑140 (MQ=255)
cagattAAAAATTTTTTGGGGCGTGTGAATCAGGGTTTATAAATCGC‑CCCAT‑GGGGTTCATTTCGTAATAAGACCCACAATAAAGAAACACGACCAGATCACGCTATGCGTCATGATCTCATCGGCGGGCACGTAGTaaa < 2:320703/135‑1 (MQ=255)
cAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTaaa > 8:333910/1‑140 (MQ=255)
cttaTAAAAATTTTATGTGCCTCCAGAATCAGC‑TTTTAAAAAAGGCCCCAC‑TGGGGGAAAATGCACAAACCCACCCCAAAAAATAAACACGCCCAGCTCTCGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAAt < 7:589562/137‑1 (MQ=255)
tAAAATTTTTCTGGGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGt < 4:68172/140‑1 (MQ=255)
ttttCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCAGCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGAGCTCATCGGCGGTCACGTAGGATATCAGTTTGatg > 2:936283/1‑138 (MQ=255)
ggggccttCTGAATCTGCGTTTTTAAATAGC‑CCCAC‑TGGCCGAAAATGCTAATCACCACAACCAAAAAGAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGc < 5:933468/133‑1 (MQ=255)
gtGAATCTGCTGTTTTAATTTCT‑ACCAA‑TGGCGCCATAGGGGCTTCAGACCCACAATATATAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCaa < 8:855596/139‑1 (MQ=255)
aTCAGC‑TTTTTAAAATCG‑ACCACGTGGCGGAAATTGATCATCAGCACCACCATAAATAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATAcc < 5:684211/140‑1 (MQ=255)
aGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCa > 3:44057/1‑140 (MQ=255)
cGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGCAAAACGACCAGATAACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCaaa > 8:108880/1‑140 (MQ=255)
cGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCATTTTGAAGTACGCTGGCGCAATACCCCaaa > 2:580602/1‑140 (MQ=255)
cGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCaaa > 4:8871/1‑140 (MQ=255)
cGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCaaa > 1:843348/1‑140 (MQ=255)
cGTATTTAAAAAGT‑ACCAC‑ACGCGGCAAAAGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATAGGCGGGCACGTATTAAATCAGAATGAAGTACTCTGGCGCAATACCCCaaa > 2:980201/1‑140 (MQ=255)
tttAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGTCGCAATACCCCaaataaa > 2:877173/1‑140 (MQ=255)
tttAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCaaataaa > 5:577426/1‑140 (MQ=255)
tttAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACCCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCaaataaa > 1:449562/1‑140 (MQ=255)
aaaTCGG‑CCCAC‑TGGCGTAAATTGCTCATCAGCCCCACCATAAATAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCaaataaaata < 2:261201/140‑1 (MQ=255)
g‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGCCCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGc > 6:528370/1‑140 (MQ=255)
g‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAAGACCCCAAATAAAATAAGCGGc > 3:648449/1‑140 (MQ=255)
g‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGATGGCGCAATACCCCAAATAAAATAAGCGGc > 2:39349/1‑140 (MQ=255)
ccgggcggcAAAGGGAAAACAGCACCCCAAAAACTAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAaga < 7:565725/137‑1 (MQ=255)
tgccggcAAATGCGAATCAGCCCCACAATAAAGAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGc < 4:246752/137‑1 (MQ=255)
tGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGc > 8:734248/1‑140 (MQ=255)
tGGCGGAAAATGCTCATCAGACCCACCATAAACAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGc < 2:187531/140‑1 (MQ=255)
tGGCGGAAAATGCGAATCAGCCCAACCATAAATAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCTGGCACGGACTAAATCAGGTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGc < 8:817761/140‑1 (MQ=255)
ggccgaaaaaTGCTAAACACCACAACAAAAAACAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGc < 2:869210/133‑1 (MQ=255)
ggcAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGCGCGAGt > 7:313486/1‑140 (MQ=255)
ggcAAATGATCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTATGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGt > 4:2515/1‑140 (MQ=255)
aTGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGAAATTCCCCAAATAAAATAAGCGGCAAGAGCGAGTAATAc > 1:150386/1‑140 (MQ=255)
gcacaaccaccAAAATCAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGc < 7:136678/135‑1 (MQ=255)
caccacCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCcgcg > 8:516531/1‑140 (MQ=255)
cccaccaAAAACAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgt < 2:60878/139‑1 (MQ=255)
acaacaaTACAGAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgt < 3:856535/134‑1 (MQ=255)
ccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGCGCGAGTAATCCGCCCTGCCGCgtttgt > 3:903496/1‑140 (MQ=255)
ccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtttgt > 3:459442/1‑140 (MQ=255)
tAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGtttt > 5:372584/1‑140 (MQ=255)
aactaaaaaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTg < 1:568618/136‑1 (MQ=255)
aaGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCATTTTGAAGTACGCTGGAGCAATACCCCCAATAAACTCAGCGGCACGAGAGTGTATTAAGCCCTGCCTCGTTTGTTTTGc > 2:890135/1‑140 (MQ=255)
aaGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGc > 2:623471/1‑140 (MQ=255)
ataaaaaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGca < 6:53898/138‑1 (MQ=255)
acaaacaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGca < 2:703233/138‑1 (MQ=255)
acaaaaaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGca < 1:209878/138‑1 (MQ=255)
acaaaaaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGca < 3:490270/138‑1 (MQ=255)
aaaaaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAGTACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatc > 8:5594/1‑140 (MQ=255)
aaaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatcca > 6:93385/1‑140 (MQ=255)
aaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAATTAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatccat > 5:522646/1‑140 (MQ=255)
aaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGCGCGAGTAATACGCCCTGCCGCGTTTGGTTTGcatccat > 8:111570/1‑140 (MQ=255)
aaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatccat > 3:628279/1‑140 (MQ=255)
aaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatccat > 2:234117/1‑140 (MQ=255)
aaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatccat > 6:157300/1‑140 (MQ=255)
aaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatccat > 3:364466/1‑140 (MQ=255)
aaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatccat > 4:428020/1‑140 (MQ=255)
aaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCCCGTTTGTTTTGcctccat > 1:388914/1‑140 (MQ=255)
|
GCCCAGATAAACAGTAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGG‑ACCAC‑TGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCAT > NZ_CP022686/2769058‑2769335
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
