Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F35 I0 R1
|
304 |
9232.4 |
10623078 |
98.3% |
10442485 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,769,196 |
A→C |
16.7% |
F47C (TTT→TGT) |
rarD ← |
EamA family transporter RarD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,769,196 | 0 | A | C | 16.7%
| 274.5
/ 17.4
| 153 | F47C (TTT→TGT) | rarD | EamA family transporter RarD |
| Reads supporting (aligned to +/- strand): ref base A (103/20); new base C (4/25); total (108/45) |
| Fisher's exact test for biased strand distribution p-value = 1.38e-12 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 172 total aligned reads displayed.
GCCCAGATAAACAGTAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCAT > NZ_CP022686/2769058‑2769335
|
gCCCAGATAAACAGTAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGaaaaa > 7:1212048/1‑140 (MQ=255)
ccAGATAAACAGTAGCCAGTTGCCGCCAATCAGCACTGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACg > 6:814255/1‑140 (MQ=255)
aGATAAACAGTAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGAc > 5:157842/1‑140 (MQ=255)
tAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCAcgc > 1:157435/1‑140 (MQ=255)
tAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACC‑CCATAAAGAAAAACGACCAGATCAcgcg > 5:525165/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCTGAGACTGCCAGCATAAAAATTTTCTGTCGCGTCTGAATCAGCGTTATTAAATACGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAAAACACGCGa > 5:16115/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGCCTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCGCTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGa > 2:1277919/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGCCTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGa > 5:362151/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTTAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCAACACCATAAAGAAAAACGACCAGATCAcgcgg > 2:164548/1‑139 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGCCCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGa > 2:195077/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCCCTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAAAGACCAGATCAcgc > 4:534071/1‑138 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAACACGACCAGATCACGCGa > 6:521277/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGa > 5:438440/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGa > 5:493237/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGa > 7:189020/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGa > 7:132859/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGACAGCATAAAAATTTTCTGTGGAGTCAGACTCAGCGTTTTTAATGAGGACCACTGGCGGCAAA‑TGATCCTCAGCAACACCATAAATAAATACGACCAGATCAcgcgc > 7:568456/1‑139 (MQ=255)
ccacgTTGCCCCCAATCACCACGGAATAGACTGCCAGAATAAAAATTTTTTTGGGCGTCTCAATCCGCGTTTTTAAATAGCACCATGGGGGGAAAT‑TGATCATCACCACCACAAAAATTAAAAACGACCAGATCACGCGa < 8:200783/136‑1 (MQ=255)
cctgtggccgccAATCCGCACGGCAGAGACTGCCAGAATAAAAATTTTCTGTGGCGTCTTAATCTGCGTTTTTAAATAGGACCACTGGCGGAAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGAt < 6:791661/134‑1 (MQ=255)
cAGTTGCCGCCAATCAGCACGGCAGAGCCTGCCAGCATAAAATTTTTCTGTGGCGGCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAT‑GGCGAATCAGAACCTCCTTAAAGAATCACGACCAGATAActcgt > 4:253752/1‑137 (MQ=255)
cAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGCCCAGATCACGCGa > 3:423115/1‑138 (MQ=255)
cAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCAcgcgc > 3:14258/1‑137 (MQ=255)
aGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTATGAATCAGCGGTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGc > 6:721118/1‑140 (MQ=255)
ttGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGt > 8:244025/1‑140 (MQ=255)
ttGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAAGCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCAGCACCATAAAGAAACACGACCCGATCACGCGATGCgg > 7:378293/1‑139 (MQ=255)
gccgccAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGCTGCGt > 3:1101694/1‑138 (MQ=255)
gccAATCAGCACGGCAGAGGCTGCCAGCATAAAAATTTTCTGTGGCGGCTGAATCAGCGTTTTTACATAGGACCACTGGCGGCAAA‑TGCTGATCAGCACCCCCATAAAGAAAAACGACCAGATCACGAGATGCggctg > 3:129385/1‑134 (MQ=255)
gccAATCAGCACGGCAGAGCCTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCCAA‑TGCGCATCAGCCCCACCATAAAGAAAAACGCCCAGATCCCGCGCTGCGTCAg > 3:247801/1‑138 (MQ=255)
cAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGAAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAggt > 4:947925/1‑137 (MQ=255)
cACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATcgg > 1:1355549/1‑140 (MQ=255)
cAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGATAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGGGGGc > 2:1137124/1‑140 (MQ=255)
cAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCAAAAAGAAAAACGACCAGATCACGCGAGGCGGCAGGATCTCATCGGCGGGc > 2:229575/1‑140 (MQ=255)
tgatccTGCCACCAAAAAAATTTTCTGGGGCTTCTCAACCCGCGTTTTAAAAAAGGACCACTGGCGCCAAA‑TGCTCATCACCCCCACAAAAAACAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCa < 6:865663/135‑1 (MQ=255)
atagaCTCCCAGCATAAAAATTTTGTGTGGGGTCTGAATCTGCGTTTTTAAATAGTACAACTGGGGTCAAA‑TTCTCATAAGCACAACCATAACGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCa < 8:1014666/138‑1 (MQ=255)
gagaCTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGc > 4:808714/1‑138 (MQ=255)
agaCTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGGCAGGCTCTCATCGGCGGGCACg > 6:328183/1‑140 (MQ=255)
agaCTCCCTGAATAAAAATTTTCTGTGGCGTCTGAACCAGCGTTTTAAAAACGCACCCCGGGCGGAAAT‑TGCTCACCCCCACCACCAAAAACAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCa < 4:1324404/138‑1 (MQ=255)
agaCTCCAAGCAAAAAAATTTTCTGTGGGTTGAGATTCAGCGTTTTTAAATAGGACCACTGGCGGAAAA‑TGCTCATCAGCACCACAATAAATAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACg < 2:722973/140‑1 (MQ=255)
aCTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACgta > 2:1008711/1‑140 (MQ=255)
tGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATAACGCGATGCGTCAGGATCTCATCGGCGGGCACgta > 4:876128/1‑138 (MQ=255)
catcATAAAAATTTTATGTGGCTTCTTAATCAGCGTTTTTAAATAGGACCACTGGCGGCATT‑TGCTAATAAGCACCACCTTAAATAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTaaa < 8:623409/137‑1 (MQ=255)
acctaaaaatTTTTGTGTGGCGTCTGAATCAGCTTTTTAAAATCGCACCAGTGGCGGAAAA‑TGCTAATCACCCCCACCTTAAAGAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTaa < 4:1145893/133‑1 (MQ=255)
gCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTaaa > 3:1297400/1‑138 (MQ=255)
aTAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAg > 2:143162/1‑140 (MQ=255)
tAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGt > 1:1379040/1‑140 (MQ=255)
ataTTTTCTTTGGCTTCTGAATAAGCTTTTTTAAATCTGACAACTGGCGGAAAA‑GGATAATAACCACCCAAAAAAATAAACACGACCAGATCACGCGAAGCGTAAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTg < 6:973773/138‑1 (MQ=255)
tttttCTTGGGCGTCTTAATCTTCTTTTTAAAATCGGACCACGGGCGGCAAA‑TGCTAATCATCACCACCATAAAGAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGaa < 2:135376/139‑1 (MQ=255)
ttttttGGGGCGTTTGACTCTGGGTTTTTAATTTCGACCAGTGGCGTAAAT‑TGTTTATCAGCACCAACATAAAAAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAg < 1:1054874/140‑1 (MQ=255)
ttttCTGTGGCGTCTGAATCTGCGTTTTTAAATAGCACCACTGGCGGAAAA‑TGCTCATCAGCACCACAATAAACAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAg < 7:498780/140‑1 (MQ=255)
ttCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTa > 6:617582/1‑140 (MQ=255)
tCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTAc > 8:1118699/1‑140 (MQ=255)
cTGTGGCGTGTGAATCAGGGTTTTTAAATAGAACCATTGG‑GCCAAA‑TGCTAAGCACCACCACAATAATTAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGc < 2:1314951/140‑1 (MQ=255)
cTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTa > 3:630424/1‑138 (MQ=255)
tgGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTg > 1:961058/1‑140 (MQ=255)
tCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCa > 7:683703/1‑140 (MQ=255)
aaccAGCTTTTTAAAATCGCCCCACGGGCGGCAAA‑TTCTCATCCCCCCCACAATAAACAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATAc < 1:175166/137‑1 (MQ=255)
aTCAGCTTTTTTAAATCGCCCCACTGGCGCAAAA‑TGCTCAGCACCACCACAATAAAGAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATAcc < 2:438669/140‑1 (MQ=255)
tgCGTTTTAAAATAGCCCCACGGGCGCAAAA‑TGCTCATCACCACCACCATAAATAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCa < 6:998338/139‑1 (MQ=255)
cGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAACAACGACCAGATAACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGAACGCTGGCGCAAAACCCCaaa > 8:1124121/1‑140 (MQ=255)
cGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCaaa > 8:728003/1‑140 (MQ=255)
cGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCaaa > 2:1083385/1‑140 (MQ=255)
tttttAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCaaa > 4:22913/1‑138 (MQ=255)
tttAAATAGGACCACTGGCGGCAAA‑TGCTCATCCGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCaaataaa > 7:678551/1‑140 (MQ=255)
tttAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCaaataaa > 1:543821/1‑140 (MQ=255)
aaaTAGCCCCACTGGCGGAAAA‑TGCTAATCACCACCACAATAAACAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCaaataaaa < 4:847334/138‑1 (MQ=255)
aaaTAGCACCACTGGGGGAAAA‑TGCTCATCAGCACCACAAAAAATAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCaaataaaata < 7:251821/140‑1 (MQ=255)
tttcgACAACTGGCGCAAAA‑TGCTAATCCCCACCACAAAAAAGAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAg < 5:225360/136‑1 (MQ=255)
caaccgtGGCGCAAAT‑TGATCATCACAACCACAAAAAAGAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGc < 1:290101/134‑1 (MQ=255)
cTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAagag > 1:464682/1‑140 (MQ=255)
gggcggaAAA‑TGCTCATCCCCACCCCAAAAAATAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGc < 7:473794/139‑1 (MQ=255)
ggcaaaa‑TGCTCATCCGCACAACAATAAACAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAg < 8:573628/136‑1 (MQ=255)
gcgcAAATTGCTCATCACCACCACAATAAACAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGa < 2:464682/138‑1 (MQ=255)
taaaa‑TGCTCATCAGCACCACCATACTGAAACACGACCAGATCACGCGATGCGGCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAg < 3:1023498/136‑1 (MQ=255)
gcAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACACCAAATAAAATAAGCGGCAAGAGCGAGTa > 8:570886/1‑140 (MQ=255)
gcAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTAAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTa > 1:382535/1‑140 (MQ=255)
aaa‑TGCTCATCCGACCCCCCAAAACCACACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTa < 4:15515/138‑1 (MQ=255)
aaa‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTa > 3:1081897/1‑138 (MQ=255)
aaa‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGAGGGCACGTAGTAAATCAGTTTGAAGTACGCTGTCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAAt > 2:273815/1‑140 (MQ=255)
caGCACCACCATAAAGAAACACGACCAGATCACGCGCGGCGTCTGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAAAACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGcc > 2:120855/1‑140 (MQ=255)
caccacCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGCGCGAGTAATACGCCCTGCcgcg > 5:697979/1‑140 (MQ=255)
caccacCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCcgcg > 1:686801/1‑140 (MQ=255)
accaccAAAAACAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCcgc < 4:482364/138‑1 (MQ=255)
caccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgttt > 1:780726/1‑140 (MQ=255)
caccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgttt > 6:156537/1‑140 (MQ=255)
ccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtttgt > 6:1180034/1‑140 (MQ=255)
ccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCggttgt > 5:999205/1‑140 (MQ=255)
ccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATATCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACTCTGGCGCAATACACCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtttgt > 6:1067583/1‑140 (MQ=255)
ccaTAAAGAAAAACGACCAGATCACGCGATGAGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGAAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCACTGCCGCgtttgt > 2:815252/1‑140 (MQ=255)
aTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGTCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtttgt > 3:1127359/1‑138 (MQ=255)
aTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtttgt > 3:327285/1‑138 (MQ=255)
aaGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTGTGtttt > 4:435913/1‑138 (MQ=255)
ccaacaaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGTCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGca < 6:521553/135‑1 (MQ=255)
ataaaaaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGca < 6:216407/138‑1 (MQ=255)
aGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTg < 4:1081897/138‑1 (MQ=255)
gAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCaa < 3:1243891/104‑1 (MQ=255)
aaaaaaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGc < 3:799170/137‑1 (MQ=255)
aaCGCCCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGccaccat > 2:997040/1‑140 (MQ=255)
aaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGc > 7:222194/1‑104 (MQ=255)
aaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatccat < 1:519107/140‑1 (MQ=255)
aaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGATTTGcatccat < 2:759754/140‑1 (MQ=255)
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GCCCAGATAAACAGTAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCAT > NZ_CP022686/2769058‑2769335
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
