Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F36 I0 R1
|
179 |
8076.5 |
8499890 |
98.3% |
8355391 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,769,196 |
A→C |
19.0% |
F47C (TTT→TGT) |
rarD ← |
EamA family transporter RarD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,769,196 | 0 | A | C | 19.0%
| 219.3
/ 16.1
| 128 | F47C (TTT→TGT) | rarD | EamA family transporter RarD |
| Reads supporting (aligned to +/- strand): ref base A (87/14); new base C (4/23); total (91/37) |
| Fisher's exact test for biased strand distribution p-value = 4.46e-12 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 141 total aligned reads displayed.
CGCCCAGATAAACAGTAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCAT > NZ_CP022686/2769057‑2769335
|
cGCCCAGATAAACAGTAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGAACCACCATAAAGaaaa > 4:529706/1‑140 (MQ=255)
ccAGATAAACAGTAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACg > 3:314431/1‑140 (MQ=255)
aGATAAACAGTAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATAAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCAACACAATAAATAAAAACGAc > 2:80744/1‑140 (MQ=255)
aaaCAGTAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCACATGCTCATCAGCACAACCATAAAGAAAAACGACCa > 8:374603/1‑138 (MQ=255)
aaaCAGTAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTAATCAGCACCACCATAAAGAAAAACGACCa > 8:753385/1‑138 (MQ=255)
aaCAGTAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGAt > 5:514815/1‑140 (MQ=255)
tAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGCCCACTGGCGGCAAATGCTCCTCAGCACCCCAATAAAGAAAAACGACCAGATCAcgc > 4:1057669/1‑140 (MQ=255)
tAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCCCCACCATAAAGAAAAACGACCAGATCAcgc > 4:976904/1‑140 (MQ=255)
tAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCAcgc > 6:761479/1‑140 (MQ=255)
tAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACAACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGAACAGATCAagc > 6:761476/1‑140 (MQ=255)
tAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGAACACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAACACGACCAGATCAcgc > 5:387463/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCCAATGCTCATCAGCCCCACCATAAAGAAAACCGCCCAGCTCACGCGa > 6:135889/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCACATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGa > 3:946059/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCCCCACCATAAAGAAAAACGACCAGATCCCGCGa > 4:365023/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCAcgcgc > 4:205040/1‑139 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCAcgcgc > 3:868343/1‑139 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGa > 1:705585/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGa > 5:962937/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGa > 1:694824/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGa > 4:691904/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCGGAATCAGCGTTTTTAAATAGGCCCACTGGCGGCAAATGCTCATCCGCACAACCATAAAGAAAAACGCCCAGATCAcgcgc > 6:26480/1‑139 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGACTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGa > 1:757083/1‑140 (MQ=255)
gCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCAAAAAAATTTTCTGGGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTCGCGGCAAATGCAAATCAGCACAACCATAAAGAAAAACGACCAGCTCAcgcgg > 2:126061/1‑139 (MQ=255)
cAGTTGCCGCGAATCAGCGCGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGGCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGATCATCAGCACCACCATAAAGAAAAACGACCAGATCAcgcgg > 8:610101/1‑137 (MQ=255)
cAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCCCCACCATAAAGAAAAACGACCAGATCACGCGa > 8:943042/1‑138 (MQ=255)
cAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGa > 7:299575/1‑138 (MQ=255)
aGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGc > 1:478186/1‑140 (MQ=255)
aGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGc > 5:335189/1‑140 (MQ=255)
ttGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAATTGCTCATCAGCACCACCATAAAGAATAACGTCCAGATCACGCGATGCGt > 6:316371/1‑140 (MQ=255)
ttGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAACACGACCAGATCACGCGATGCgg > 2:454397/1‑139 (MQ=255)
ttGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGt > 1:830278/1‑140 (MQ=255)
tGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCg > 7:25169/1‑138 (MQ=255)
gccgccAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGt > 7:693362/1‑138 (MQ=255)
ccgccAATCAGCACGGCAGAGACTGCCAGCATAAAATTTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCGCCACCATAAAGAAAAACGCCCCGATCACGCGATGCGTCAg > 6:2979/1‑140 (MQ=255)
ccgccAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAg > 3:844131/1‑140 (MQ=255)
gccAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGCCAACTGGCGGCAATTGCTCATCAGCCCCACCATAAAGAAAAACGCCCAGATCACGCGATGCGTCAGGa > 5:540667/1‑140 (MQ=255)
gccAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAggg > 1:611166/1‑139 (MQ=255)
gCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCCTCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATcg > 3:92394/1‑140 (MQ=255)
gCATAGACTGCCACAAAAAAATTTTTCGGTGGCGTCTCAATCAGGTTTTTTAAATAGCCCCACGGGCGCAAAATGCTCATCCCCACCCCAAAAACCAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCggg < 3:225025/140‑1 (MQ=255)
tgtgaatGCCAGAATAAAATTTTTTTGTGGGTTCTTAATCCGCGTTTTTAAATCGTCCCAGTGGCGGAAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCa < 4:844131/134‑1 (MQ=255)
agagACTGCCAGAATAAAAATTTTCGGTGGCGTCTGAATCCGCGTTTTTAAATCGGCCCACTGGCGGCAAATGCTCATCAGCACCACCAAAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCggg < 8:790984/138‑1 (MQ=255)
agagACTGCCAGAATAAAAATTTCGTGTGGCGTCTTAAGCCGCTTTTTAAAATAGCACCACTGGCGTCAAATGCTCATCCGCACCACCATAAAGAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCggg < 8:181469/138‑1 (MQ=255)
aCTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCCCCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACgta > 1:982739/1‑140 (MQ=255)
ttGCCAGCATAAAAATTTCTTGTGGCGTATTAATCAGCTTTTTAAAATACCACCACTGGGGCAAAATGCTCATCCCCCCCACAATAAAAAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACgtag < 3:548446/139‑1 (MQ=255)
gCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACgtagta > 1:994907/1‑140 (MQ=255)
gCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACgtagta > 6:957449/1‑140 (MQ=255)
gCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGAGTTTTTAAATAGGACCACTGGCGGCAAATGCTAATCAGCAACACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCAAgtagta > 6:860216/1‑140 (MQ=255)
ctgaaTAAAATTTTTCTGGTGCTTATTATTCAGCGTTTTTAAATAGCACCACTGGCTGAAAATGATAATATCGAACAAAATAATTAAAAACGACCAGATCACGAGATGCGTCAGGATCTCATCGGCTGGCACGTAGTaaa < 4:485048/136‑1 (MQ=255)
cAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACgtagta > 8:891526/1‑138 (MQ=255)
cAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTaaa > 2:3765/1‑140 (MQ=255)
agaaTAAAAATTTTCGGGGGCGGCTTAATCCGCGTTTTAAAATCGGACCAGTGGCGTAAAATGCTCATCACCACCACCATAAATAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAAt < 6:468557/137‑1 (MQ=255)
aGCATAAAAATTTTCTGTGGCGTCTTAATCCGCGTTTTTAAATAGGACCACTGGCGGAAAATGCTCATCACCACCACAAAAAAGAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAAt < 2:195730/140‑1 (MQ=255)
cATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCa > 5:770199/1‑140 (MQ=255)
taaaaaaTTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCCCCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATc > 7:364958/3‑138 (MQ=255)
tAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGt > 4:800791/1‑140 (MQ=255)
aaataTTTTGTGGGTCGTCTTCATCTGCTTTTTAAAATCGGCCCCCTGGCGGCAATTGCTCATCCCCCCCACAATAAATAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGtt < 6:696056/140‑1 (MQ=255)
aaaaTTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGt > 8:86639/1‑138 (MQ=255)
cTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCTGCACCACCATAAAGAAAAACGACCAGCTCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCATTTTGAAGTa > 7:448717/1‑138 (MQ=255)
tgtgGCGTTTTAATCTTCTTTTTAAAATAGCCCCCCGGGCGTCAATTGCTAAGCACCACCACCAAAAATAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGc < 3:201501/140‑1 (MQ=255)
tggggCGTCTGAATCCGGTTTTTAAAATAGCCCCACTGGCGTAAAATGCTAAACACCACCACAAAAAAGAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGc < 5:224018/137‑1 (MQ=255)
gcggcggcTGAATCTGCGTTTTAAAAACGTCCCACTGGCGGCAATTGCTCAACACCACCACAAAAACAAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCt < 2:140130/138‑1 (MQ=255)
ggggTCTGAAACAGCGTTTTAAAATAGGACCACTGGCGGAAATTGCTAAACTCCACCACAAAAAATAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCt < 8:192766/135‑1 (MQ=255)
gctttCTAAATCAGCTTTTTTAAATCTCCCCACTGGCGCATAATTATCATCATCACAACAAAAAACAAACACGACCAGATCAAGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTgg < 3:3071/136‑1 (MQ=255)
tCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCAACACCATAAAGAAAAAACACCAGATCACTCGATGAGACAGGATCTCATCGGCGGGCACGAAGTTAATCAGTTTCAAGTACGCTGgcgcg > 4:335840/1‑139 (MQ=255)
aTCTGCTTTTTTATATAGGACCAGGGGCGCAAAATGGTCTATTCAACCACCATAAACAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATAcc < 3:459731/140‑1 (MQ=255)
aTCAGCGTTTTAAAATAGGCCACCTGGCGGAAATTGCTCATCAGCACCACAAAAAACAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATa < 7:713971/138‑1 (MQ=255)
cAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCCCCATAAAGAAAAACGACCAGATCACGCGATGCGTCATGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGACTTACGCTGGCGCAATAcccc > 2:617576/1‑140 (MQ=255)
cGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCaaa > 1:363030/1‑140 (MQ=255)
cGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCaaa > 2:885475/1‑140 (MQ=255)
tttAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGAGCAATACCCCaaataaa > 1:235353/1‑140 (MQ=255)
attggACCACTGGCGGCAAATGCTCATCCGCACCACCATAAAGAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCaaataaaata < 8:780696/135‑1 (MQ=255)
ggACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGc > 7:75067/1‑138 (MQ=255)
gACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCCGGATCTCATCGGCGGGCCCGTAGTAACTCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGc > 1:915787/1‑140 (MQ=255)
gACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTACATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGc > 6:43623/1‑140 (MQ=255)
gACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGc > 5:385704/1‑140 (MQ=255)
cccccTGGCGTCAATTGCGCATCAGCACCACAATAAACAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCa < 2:887721/136‑1 (MQ=255)
cccACTGGCGGCAAATGCTCATCCCCACAACCAAAAAGAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCgg < 8:231532/137‑1 (MQ=255)
cccACTGGCGCAAAACTCTAAGCAGAACCACAAAAAAAAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCgg < 7:146573/137‑1 (MQ=255)
ccACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCCCGCGATGCGTCAGGAGCTCATCGGCGGGCACGTAGTAAATCAGTTTGATGTACGCTGGCGCAATACACCAAATAAAATAAGCGGc > 7:94363/1‑138 (MQ=255)
tGGCGGAAATTCCACACCCGCACCACAATAAAGAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGGAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGc < 2:812686/140‑1 (MQ=255)
gggcggcAAATGCTCATCACCACCACCAAAAACAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGc < 1:620158/139‑1 (MQ=255)
gggcggaAAATGCTCATAAGCACCACAATAAATAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGc < 6:922068/139‑1 (MQ=255)
ggcgccATATGGTCTTCAACACATCCAAAAATAAAATCGACCAGATCACGCGATGCGTCTGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTAGGCTGGCGCTATTCCCCAAATAAAATAAGCGGCAAGAGCg < 2:759479/140‑1 (MQ=255)
gcAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTa > 1:385327/1‑140 (MQ=255)
aTGCTTATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATATCCCAAATAAAATAAGCGGCAAGAGCGAGTAATAc > 5:99719/1‑140 (MQ=255)
acaccaccacAAAAAACAAACACGACCAGATCACGCGATGAGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGATTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGc < 3:732553/136‑1 (MQ=255)
caccacCATAAAGAAAAACGACCAGAACACGCGATGCGTCAGGATCTCATCGGCGGTCACGTAGTAAATCAGTTTGAAGTACGCTTGCGGAATACCCCAAATAAAATAAGCGGCTAGAGCGAGTAATACGCCCTGCctcg > 4:730485/1‑140 (MQ=255)
ccccccaAAAATAAACACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgt < 1:1007635/136‑1 (MQ=255)
caccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgttt > 5:634794/1‑140 (MQ=255)
ccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCTGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCTGCAAGAGCGAGTAATAAGCCCTGCCGCgtttgt > 5:978845/1‑140 (MQ=255)
ccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtttgt > 2:350588/1‑140 (MQ=255)
ccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtttgt > 4:186423/1‑140 (MQ=255)
ccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtttgt > 1:29190/1‑140 (MQ=255)
aTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtttgt > 7:927534/1‑138 (MQ=255)
tAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGtttt > 5:905995/1‑140 (MQ=255)
aaccaacaaCGACCAGAGCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTg < 4:642433/133‑1 (MQ=255)
acaaacaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGca < 2:988614/138‑1 (MQ=255)
gAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGc > 8:940310/1‑138 (MQ=255)
aaaacaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGc < 7:290210/137‑1 (MQ=255)
aaCGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatccat < 4:482232/140‑1 (MQ=255)
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CGCCCAGATAAACAGTAGCCAGTTGCCGCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATCTCATCGGCGGGCACGTAGTAAATCAGTTTGAAGTACGCTGGCGCAATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCAT > NZ_CP022686/2769057‑2769335
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
