Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F13 I0 R1 235 6960.4 9135780 98.4% 8989607 135.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NZ_CP022686 2,546,400 A→C 9.8% L93R (CTG→CGG)  waaG ← glycosyltransferase family 4 protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0226862,546,4000AC 9.8% 317.1 / 4.4 177L93R (CTG→CGG) waaGglycosyltransferase family 4 protein
Reads supporting (aligned to +/- strand):  ref base A (84/64);  new base C (3/19);  total (87/90)
Fisher's exact test for biased strand distribution p-value = 1.55e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 179 total aligned reads displayed.

CTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCA  >  NZ_CP022686/2546261‑2546540
                                                                                                                                              |                                                                                                                                            
cTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCa                                                                                                                                              >  2:1035587/1‑140 (MQ=255)
    gtCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGccc                                                                                                                                          <  6:85236/140‑1 (MQ=255)
      cGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGAGTTTACGTGACGTCAGTCGATAGAATATGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAAAATCAGCG‑GCATAATAAA‑CGTCCAGCCCCg                                                                                                                                        <  1:373878/140‑1 (MQ=255)
         cgtGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCgg                                                                                                                                       <  4:324129/136‑1 (MQ=255)
         cTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGCCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCa                                                                                                                                     <  2:645286/140‑1 (MQ=255)
          ttGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCAt                                                                                                                                    >  8:123324/1‑140 (MQ=255)
           tGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCAtt                                                                                                                                   <  6:48335/140‑1 (MQ=255)
           tGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCAtt                                                                                                                                   >  6:1101826/1‑140 (MQ=255)
             cccTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCAtttt                                                                                                                                 >  8:15956/1‑140 (MQ=255)
             cccTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCAtttt                                                                                                                                 >  7:350018/1‑140 (MQ=255)
               cTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCAtttt                                                                                                                                 >  3:879213/1‑138 (MQ=255)
               cTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCAtttt                                                                                                                                 >  3:1037810/1‑138 (MQ=255)
                 gTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTttatta                                                                                                                             <  1:628311/140‑1 (MQ=255)
                  ttCGAAGATTGCCCGCTAAAAGGCTGCATAATGGCGATAACGTTACGTCAGGCGATAGAAAAATCCTTTCTACTGCTCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GAATAAAAAA‑CGACCAGAACCGGCAATTTATTaa                                                                                                                            >  8:327768/1‑140 (MQ=255)
                    cGAAGGTTGCCCGCTCAAAGGCGGAATAATTGCGATAACGTGACGTAAGGCGATAGAAAAAGCCATTCTCCTGCGCTACTTTCTCGGCAT‑AAAAAACATCAGCG‑GCATAATAAA‑CGTACAGCCCCGGCATTTTATTaa                                                                                                                            >  3:1162717/1‑138 (MQ=255)
                       aGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCGCGGCATTTTATTAAATCCa                                                                                                                       >  8:801211/1‑140 (MQ=255)
                       aGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATccc                                                                                                                       >  6:775711/1‑139 (MQ=255)
                            gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCTATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCGCCGGCATTTAATTAAATCCAACGAc                                                                                                                  >  8:1088148/1‑140 (MQ=255)
                            gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGAc                                                                                                                  >  5:688209/1‑140 (MQ=255)
                            gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGAc                                                                                                                  >  5:1003638/1‑140 (MQ=255)
                            gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTAAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑ATCAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTAGTAAATACAACGAc                                                                                                                  >  6:894586/1‑140 (MQ=255)
                            gCCCGCTCAAAGGCGGATTAATGGCGAGAACGTGACGTCAGGCGATAGAAACAGCCTGTCACCTCCGCTACTTTCTCGGCAG‑ATCAAACATCAGCG‑GCTGAATAAA‑AGTCCAGCCCCGGCATTTTATTAAATCAAACGAc                                                                                                                  >  5:571624/1‑140 (MQ=255)
                              ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTGCTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCCGCCCCGGCATTTTATTAAATCCAACGAc                                                                                                                  >  3:1022243/1‑138 (MQ=255)
                              ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGAc                                                                                                                  >  4:513507/1‑138 (MQ=255)
                              ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGAc                                                                                                                  >  3:530523/1‑138 (MQ=255)
                                      tggcggcATATTGGAGATACCGTGCCGACTGGCTATTTAAAAAGCGTTTCTCTTGCGCTAATTTTTCGGAAT‑AACAAACATCCCCG‑GAATAATAAA‑CGTCCCGCCCCGGCATTTTATTAAATCCAACGACTCTATCGa                                                                                                          <  4:593835/137‑1 (MQ=255)
                                      gggggtcATAATGGGTATATCGGGAGGTCAGGCTAAATAAAACGCATTGATCCTGGGCAATTTTCTCGGCTA‑AACAAACATCCGCG‑TAATAATAAC‑CGTCCAGCCCCGGAATTTTATTAAATCCAACGACTCTATCGACg                                                                                                        <  6:343693/134‑1 (MQ=255)
                                        gcggaATATTGTCGATAACGTGAGGTCTGGCGTTATAAAAAGCCTTTCTCCTGCGCTATTTTCTGGGAAT‑ACCAAACATCAGCG‑GAAAAATAAA‑CGTCCTGCCCCGGATTTTTATTAAATCCAACGACTCTATCGACg                                                                                                        <  4:751835/138‑1 (MQ=255)
                                           gcATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCACCGACTCTATCGACGGGgtg                                                                                                   >  6:696661/1‑140 (MQ=255)
                                            cATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCTCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑AGTCCAGCCCCGGCATTTTATTAAATACAACTACTCTATCGACGGGgtgt                                                                                                  >  8:75615/1‑140 (MQ=255)
                                            cATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtgt                                                                                                  >  7:411922/1‑140 (MQ=255)
                                            cATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCGTTCTACTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CTTCCCGCCCAGGCATTTTCTTAAATCCAACTACTCTATCGCCGGGgttt                                                                                                  >  8:936589/1‑138 (MQ=255)
                                              tAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATACA‑CGGCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtgt                                                                                                  >  4:887204/1‑138 (MQ=255)
                                                      aTAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAC‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt                                                                                        >  7:967374/1‑140 (MQ=255)
                                                      aTAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt                                                                                        >  8:115807/1‑140 (MQ=255)
                                                      aTAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt                                                                                        >  5:781515/1‑140 (MQ=255)
                                                      aTAACGTGACGTCAGGCGATACAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATAAGCG‑GCATAATAAA‑CGTCAAGCCCCGGCATTTTATTAAATCCAACGCCTCTATCGACGGGGTGTTCACGTAAAt                                                                                        >  8:541058/1‑140 (MQ=255)
                                                            tGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCAGAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGttt                                                                                    >  3:821240/1‑138 (MQ=255)
                                                              aCGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGccc                                                                                                                                          <  8:269178/82‑1 (MQ=255)
                                                              aCGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGc                                                                                >  1:1043206/1‑140 (MQ=255)
                                                                 tccggCTATACAAAAAGCCTTTCTCGTGCGCTACTTTCTCGGCAT‑AACAAACATCCGCG‑GCATAATAAC‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCAcc                                                                             <  2:36568/137‑1 (MQ=255)
                                                                 gcagtctatatAAAACGCCTTTCACCTCCGCTACTTTCGCGGAAT‑AACAAAAATCAGCG‑CCATAAAAAC‑CGTCCTCCCCCGGCATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCAcc                                                                             <  8:1070266/133‑1 (MQ=255)
                                                                     gctatatAAAACGCCTTCCTCCTGCGCTACTTTCTCGCAAA‑AACAAACATCCGCG‑GAAAAATAAA‑CGTCCAGCCCCGCCATTTTATTAAACCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCa                                                                           <  3:669087/135‑1 (MQ=255)
                                                                              aacgctattCTCCTGCGCTAATTTCTGTCCAT‑AA‑AAACACCCCCGCACAAAATAAA‑CGTCCACCCCCGGAATTTTATTCAATCCAACGACTCTATCGCCGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATAtt                                                                <  6:50877/133‑1 (MQ=255)
                                                                                   cTTTCTCCTGCGTTACTTTCTCGGCAT‑AAAAAACATCTGGG‑GAATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCa                                                           <  6:599826/140‑1 (MQ=255)
                                                                                     ttcccttGCGCTACTTTCGCGGCAT‑AAAAAACATCA‑CG‑GCAAAAAAAACCGCCCCGCCCCGGAATTTTATAAAACCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCAtt                                                         <  7:580939/134‑1 (MQ=255)
                                                                                      tctcCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTg                                                        >  2:1146168/1‑140 (MQ=255)
                                                                                      tctcCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCACGGCATTTTATCAAATACAACGACTCTATCGACGGTGTGTTGACGTAAATGTTTTTGCACCCAGGCAATATATTCCGCATTg                                                        >  5:706653/1‑140 (MQ=255)
                                                                                        tcCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTg                                                        >  3:784691/1‑138 (MQ=255)
                                                                                        tcCTGCGATAATTTCTC‑GCATAAACAAACTCCCGCG‑TAATAAAAAA‑CGCCCAGCCCCGGATTTTTATAAAATCACACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTgcg                                                      <  1:1027989/140‑1 (MQ=255)
                                                                                        cccTGCGATAATTTCTCGCCTT‑AACAACACTCCGCG‑CAAAAATAAA‑CGACCCCCCCGGGATTTTTATAAACACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTgcg                                                      <  1:343247/139‑1 (MQ=255)
                                                                                            gcgcTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCAAGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCg                                                  >  7:139416/1‑140 (MQ=255)
                                                                                            gcgcTACTTTCTCGGAAT‑AACAAACATCAGCG‑GCATAATAAA‑CCTCCAGACCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGAGCACg                                                  >  1:489740/1‑140 (MQ=255)
                                                                                             cgcTACTTTCTCGGCAA‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGTCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGccc                                                   <  4:131014/138‑1 (MQ=255)
                                                                                                taatttCTGGGCAT‑AACAAACATCAGCG‑CCATAATAAA‑AGCCCAGCCCCGGAATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTg                                                <  3:906665/135‑1 (MQ=255)
                                                                                                aaCTTTCTCGTCAA‑AACAAACAGCCGCG‑GCATAAAAAC‑CGACCAGCCCCGGCATTTTATAAAAACCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGAt                                              <  7:250575/139‑1 (MQ=255)
                                                                                                aaCTTTCTCGGCAA‑AAAAAACATCAGCG‑GCAAAAAAAA‑CGTCCAGCCCCGCCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTg                                                <  4:888171/137‑1 (MQ=255)
                                                                                                  cTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTTCACCACGGCAAAATATTCCGCATTGCTCCCGTGATTg                                            >  7:258496/1‑140 (MQ=255)
                                                                                                     tatcGTCAA‑AACAAACATCCGCG‑TCATAATAAA‑CTTCCCGCCCCGGCATTTTTTTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTa                                         <  1:604358/138‑1 (MQ=255)
                                                                                                      ctcGGAAA‑AACAAACATCAGCG‑GCAAAATAAA‑CGTCCAGCCCCGCCATTTTATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTAt                                        <  1:1035587/140‑1 (MQ=255)
                                                                                                       gcGGCAT‑CACAAACATCCGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTa                                         <  4:30830/137‑1 (MQ=255)
                                                                                                         ggCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATg                                       >  4:613101/1‑138 (MQ=255)
                                                                                                         ggCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATg                                       >  4:992647/1‑138 (MQ=255)
                                                                                                            aT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCAAACGACTCTATCGCCGGGGTGTTCACTTAAATGTTTTTGCACCCATGCAAAATAGTCCGCATTGCGCCCGTGATTGGTTTGctagt                                  >  6:451127/1‑136 (MQ=255)
                                                                                                                 aaaacaTAAGCG‑GCATAATAAC‑CGTCCATCCCCGGAATTTAATTAAATCCAACGACTCTATCGACGGGGGGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATCGCGCCCGTGATTGGTATGCGATTTAAc                              <  8:706099/139‑1 (MQ=255)
                                                                                                                   accaTCAGCG‑CCATAAAAAC‑CCCCCCGCCCCGTAATTTTATAAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg                            <  5:356493/138‑1 (MQ=255)
                                                                                                                   aacaTCAGCG‑GCATAATAAA‑CGACCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc                              <  4:642542/138‑1 (MQ=255)
                                                                                                                   aacaTCAGCG‑GCAAAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc                              <  4:497918/138‑1 (MQ=255)
                                                                                                                   aacaTCAGCG‑GAATAATCAC‑CGTCCAGCCCCGCAATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg                            <  1:1147899/140‑1 (MQ=255)
                                                                                                                    acaTCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCgg                           >  8:211932/1‑140 (MQ=255)
                                                                                                                        cAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGcc                         >  3:286810/1‑137 (MQ=255)
                                                                                                                           cG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTACGCATTGCGCCCGTGATTGGTATGCTATTTAACAGGCACTTTg                    >  8:458743/1‑140 (MQ=255)
                                                                                                                           cG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAAAGCCTCTATCGACGTGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGCTTTAACCGGCACTTTg                    >  2:742448/1‑140 (MQ=255)
                                                                                                                            ggtaataataAA‑CGACCAGCCGTGTAATTTTATTAAAACACACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTg                    <  1:707484/136‑1 (MQ=255)
                                                                                                                              gCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTg                    >  3:293594/1‑138 (MQ=255)
                                                                                                                               cATACTATA‑CGTCCAGCCCCGGCATTTTATTAACTCCAATCACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCAACCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc                 <  1:138871/140‑1 (MQ=255)
                                                                                                                               cATAATAAA‑CGTCCCGCCCCGTAATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGa                   <  3:982672/138‑1 (MQ=255)
                                                                                                                               cATAATAAA‑CGTCCAGCCCCGGCTTTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGa                   <  4:162141/138‑1 (MQ=255)
                                                                                                                               cATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGa                   <  4:959605/138‑1 (MQ=255)
                                                                                                                               aataataAC‑CGTCCCGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGa                   <  3:513507/137‑1 (MQ=255)
                                                                                                                               aataataAC‑CGTCCAGCCCCGCCATTTTATTAAATCCCACGACGCTCTCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCTATTTAACCGGCACTTTGa                   <  4:699365/137‑1 (MQ=255)
                                                                                                                               aaaaataaC‑CGTCCACCCCCGTCATTTAATTAAATCCAACGACTCTATCGACGGGGTGTTCAAGTAAATGTTTTTGCACCCAGTCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc                 <  7:773942/137‑1 (MQ=255)
                                                                                                                               aaaaataaA‑CGTCCTGCCCGGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGa                   <  4:867320/135‑1 (MQ=255)
                                                                                                                               aaaaataaA‑CGCCCCGCCCCGCCATTTAATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc                 <  6:56383/137‑1 (MQ=255)
                                                                                                                                attataaACCGTCCACCCCCGCATTTTTATAAAAACCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc                 <  7:941287/137‑1 (MQ=255)
                                                                                                                                ataataAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATcc                >  1:1084301/1‑139 (MQ=255)
                                                                                                                                 taaaaaA‑CGTCCAGCCCCGGCAATTTATTAAATCCAAAGACTCTATAGACGGGGTGTTAACGTAAATGTTATTGCACACATGCAAAATATTCCGCATGGCGCCCATGATTGGTATGAGATTTAACCGGCACTTTGATCAg               >  8:613920/1‑140 (MQ=255)
                                                                                                                                 aattaaC‑CGTCCCCCCCCGGCATTTAATTAAATCCCACGACTCTATCGACGGGGTGTTCTCGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc                 <  3:205997/135‑1 (MQ=255)
                                                                                                                                  aatacA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGt              <  7:245169/140‑1 (MQ=255)
                                                                                                                                  aataaC‑CGTCCAGCCCCGGATTTTTATAAATTCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGt              <  2:202058/140‑1 (MQ=255)
                                                                                                                                  aataaC‑CGGCCAGCCCCGGCTTTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCa                <  4:181204/138‑1 (MQ=255)
                                                                                                                                  aataaA‑CGTCCAGCCCCGGAATTTTATTAAACCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGt              <  1:569241/140‑1 (MQ=255)
                                                                                                                                       a‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCaaa         <  1:846593/140‑1 (MQ=255)
                                                                                                                                       a‑CGTCCACCCCCGTCATTTTATTAAATCCAACGACTCTATCGACGGGTTGTGCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCa           <  4:346366/138‑1 (MQ=255)
                                                                                                                                        cgttCCACCCCGGGAATTTAATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCaaa         <  5:217213/137‑1 (MQ=255)
                                                                                                                                        ccGTCCCGCCCGGGAATTTTATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCaaa         <  7:677513/139‑1 (MQ=255)
                                                                                                                                        aagTCCAGCCCCGGCATTTATATAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCaaa         <  1:327491/138‑1 (MQ=255)
                                                                                                                                         cGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTT‑ACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATa       >  1:1138716/1‑140 (MQ=255)
                                                                                                                                          gTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATa       >  1:890120/1‑140 (MQ=255)
                                                                                                                                          gTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATa       >  1:363002/1‑140 (MQ=255)
                                                                                                                                              |                                                                                                                                            
CTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAT‑AACAAACATCAGCG‑GCATAATAAA‑CGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCA  >  NZ_CP022686/2546261‑2546540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A