Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F2 I0 R1
|
233 |
6461.8 |
9239822 |
98.3% |
9082745 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,546,400 |
A→C |
13.1% |
L93R (CTG→CGG) |
waaG ← |
glycosyltransferase family 4 protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,546,400 | 0 | A | C | 13.1%
| 176.5
/ 2.4
| 120 | L93R (CTG→CGG) | waaG | glycosyltransferase family 4 protein |
| Reads supporting (aligned to +/- strand): ref base A (59/41); new base C (3/16); total (62/58) |
| Fisher's exact test for biased strand distribution p-value = 7.67e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 121 total aligned reads displayed.
CTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATAC > NZ_CP022686/2546261‑2546536
|
cTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCa > 1:640169/1‑140 (MQ=255)
tgtgTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCTGCATAACAAACATCAGCGGCATAATAAACGTCCAg > 8:516505/1‑140 (MQ=255)
ggCTTGCCCTGATCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGcccc > 5:218596/1‑138 (MQ=255)
cccTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCTTAACAAAAATCAGCGGCATAATAAACGTCCCGCCCCGGCAtttt > 1:648500/1‑140 (MQ=255)
cccTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCAtttt > 7:940391/1‑140 (MQ=255)
cccTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTACTGCGCTACTTTCTCGGCATAACAACCATCAGCGGCATAATAAACGTCCAGCCCCGGCAtttt > 4:625288/1‑140 (MQ=255)
ttCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 1:409538/1‑140 (MQ=255)
ttCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 3:655606/1‑140 (MQ=255)
ttCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 1:848259/1‑140 (MQ=255)
ttCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 7:734847/1‑140 (MQ=255)
tCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGAGGTCTGGCGATTTAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGAATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaaa < 8:177160/140‑1 (MQ=255)
tCGAAGGTGGCCCGCTCAAAGGCGGCATAATGGCGATAACGTTACGTCAGGCGATAGAAAAAGCCTTGCTCCTGCGCTACTTTCTCGCCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTttatta < 6:741869/138‑1 (MQ=255)
tCGAAGGGTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCTATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaaa < 2:940801/140‑1 (MQ=255)
cGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAACGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 5:911666/1‑138 (MQ=255)
cGAAGGTTGCCCGCTCAAAGGCCGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTTCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 6:667031/1‑138 (MQ=255)
atggTTGCCCGCTCAACGGGGGCATAAGGGCTATAACGTGACGCCAGGCGATAGAAAACCCCTTTCTCCTGCGCTACTTTCTCGGAATACAAAAAAACAGCGCAATAAAAAACGCCCCGCCCCGGCATTTTATTAAATcc < 8:472155/138‑1 (MQ=255)
aGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCa > 1:376596/1‑140 (MQ=255)
aGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCa > 2:866950/1‑140 (MQ=255)
aGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCACGGCATTTTATTAAATcga > 4:454187/1‑138 (MQ=255)
ggTTGCCCGATCAAGGGCGGAATAATGGCGATACCGTGCCGTCCGGCTATATAAAAAGCCTTTCACCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAACCGACCCGCCCCGGCATTTTATTAAACCCaa < 2:980154/140‑1 (MQ=255)
tGCCCGCTCAAAGGCGGCATAATGGCTATAACGTGACGGCAGGCTATATAAAAACCCTTTCACCTGCGCTACTTTCGCGGAATAACAAACAACAGGGGCATAATAAACGACCACCCCCGGATTTTTATTAAATCCAAc < 6:296450/138‑1 (MQ=255)
cgCCCGCTCAACGGCGGCAAAATGGCGATAACGTGACGCCAGGCGAAACAAACAGCCGTTCTCCTGCGCACCTTTCTCGCCAAAACAAACAGCCGCGCAATAAAACAGGCCCAGCCCCGGCATTTTATTAAATCCAACGa < 2:485077/139‑1 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAACGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 3:1106385/1‑140 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 2:475821/1‑140 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 4:261916/1‑140 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 1:488926/1‑140 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAATAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 5:807883/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 6:896307/1‑138 (MQ=255)
cAACGGCGGCATAATGGCTATAACGTGACGTCAGGCGATACAAAAACCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCg < 2:144461/140‑1 (MQ=255)
gcggcATTATGGCTTAAACGTGACGTCATGCGTTAGAAAAAGCCTTTCTCCTGCGTTAATTTCTCGTCATAACAAACATCAGCGGCAAAATAAACGGCCAGCCCCGGCATTTTATTAAAACCAACGACTCTATCGACggg < 4:658592/140‑1 (MQ=255)
ctggcATAAGGGGGATAACGGGACGCCTGGCTATATAAAACTCATTTATCCTGCGCTAATTTCTCGGCATAACAAACATCTGCGGCATAATAAACGTCCCGCCCCGGATTTTTATTAAAACCAACGACTCTATCGACg < 6:426785/136‑1 (MQ=255)
cATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCACCGACTCTATCGACGGGgtgt > 7:626331/1‑140 (MQ=255)
cATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtgt > 3:523596/1‑140 (MQ=255)
aaTACTGGCGATACGGGCACGTCTGGCTATAGAAAATCCCTTTCCCCTGCGCTCCTTTGTCGGCTTAACAAACATCAGCGGCATAATAAACGTCCAGCCCCTGCATTTTATTAAATCCAACGACTCTATCGACGGGgtgt < 4:313151/139‑1 (MQ=255)
gttccGTCAGGCGATATCAAAAGCCTTTCTCCTGCGCTAGTTTCTCGGAATAACAAAAATCCGCGTCAAAATAACCGCCCACCCCCGTCTTTTTATTAAATCCAACGACTCTATCGACGGGGGGTTCACGTAAATGtgtt < 4:713219/136‑1 (MQ=255)
gttaCGTCTGGCGAAAGAAAAAGCCTTTCGCCTGCGCTACTTTCTCGTCAAAACAACAATCTGCGCCATAAAAAACGTCCAGCCCCGTAATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGtttt < 2:729932/137‑1 (MQ=255)
aCGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGc > 7:594643/1‑140 (MQ=255)
gccAGGCGAAAGAAAAAGCCTTTCTCCTGCGCTAGTTTCTCGGAAAAACAAACATCAGCGGCATAATAACCGCCCAGCCCCGGAATTTTATAAAACCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGc < 5:258854/136‑1 (MQ=255)
ggCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAg > 7:457015/1‑140 (MQ=255)
ggCGATACAAAAAGCCTTGCGCAGGCGCTACTTTCGCGGCAAAAAAAACATCCGCGCCAAAATACACGGCCCGCCCCGGCATTTAATAAAATCACACGACTCTCTCGCCGGGGTGTCCACGTAAATGTTTTTGCAccc < 5:634484/138‑1 (MQ=255)
gCGATAGAACAAGCCTTTCTCCTGCGCTACGTTCTCGGCATAACACACATCAGCGGCTTAATACACGTCCAGCCCCGGCATTTGATTAAATCCCAGGACTCTATCGCCGGGGGGGTCAGGTAAATCTTGTTGCGCCCAgg > 4:412641/1‑140 (MQ=255)
gCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAgg > 2:866760/1‑140 (MQ=255)
caTACAAAAAGCCTTTCCCATGCGCACCTTCCTCGCCAAAACAACCACCCGCCCAAAAAAAAACCCCCACCCCCGCAATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAgg < 6:49619/137‑1 (MQ=255)
tttaaaaaGCGTTTCCCGGGCGCTACTTTCTCCGAAAAACAAACAGCTGCGGAAAAAAAACCGGCCCGCCCCGGCATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCaaa < 2:149075/137‑1 (MQ=255)
tacaaaacGCCTTTCTCCTGCGCTACTTGCTCGGCAAAACAAACACCAGCGCCAAAATAACCGACCCCCCCCGGAATTTTATTAAACCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCa < 5:743054/135‑1 (MQ=255)
aGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCaaaa > 7:164479/1‑140 (MQ=255)
aaaaaGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAata > 8:1012566/1‑140 (MQ=255)
ttCTCTTTCGCTACTTTCTCTGATTATCAAAATTAAGCTGCTTAATAAACGTCCTGCCGCGGAATTTTTTAATATCCTACGACTCTATCGACGGGGTGTTCACGTAATTGTTTTTGCACCCAGGCAAAATATTCCTCAtt < 2:520632/140‑1 (MQ=255)
cccTGCGCTAATTTCTCGGAATACCAAACATCAGCGGAATAAAAACGGTCCCGCCCCGGAATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTgcg < 4:178239/139‑1 (MQ=255)
accTGCTATACTTTCTCGGAAAAAAAACCATCCGCGGAATAAAAACCGCCCCGCCCCGGAATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTg < 5:314150/137‑1 (MQ=255)
gcgcTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCg > 3:309428/1‑140 (MQ=255)
gcgcTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCg > 2:637131/1‑140 (MQ=255)
gcgcTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCAGTTTATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCAATGCGCCCg > 2:294125/1‑140 (MQ=255)
gcgcTACTTTCTAGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATACAACGACTCAATCTACGGGGTGTTCACGTAAATGTTTTTGTACCCAGGAAAAATATTACGCATTGCGCCCg > 7:19339/1‑140 (MQ=255)
cgcTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCgg > 3:533257/1‑139 (MQ=255)
cgcTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGt > 1:345848/1‑140 (MQ=255)
tACTTTCTCGCAATAACAAACATCCGCGGAATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTg < 6:1065932/138‑1 (MQ=255)
aaCTTTCTCGCCATAACAAACATCCGCGCAATAAAAAACTTCCAGCCCCGGCTTTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTg < 6:619112/137‑1 (MQ=255)
cTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTg > 8:960179/1‑140 (MQ=255)
cTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTg > 7:1080830/1‑140 (MQ=255)
tctcGGCAAAACAAACATCAGCGGCAAAAAAACCGCCCACCCCCGGCATTTTATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTa < 1:562971/140‑1 (MQ=255)
aTAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCCCCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGAtt > 4:946527/1‑140 (MQ=255)
aTAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTAGGCGAtt > 8:249121/1‑140 (MQ=255)
aTAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATACCGCAATGCGCCCGTGATTGCTATGCTAtt > 4:74133/1‑140 (MQ=255)
caaaaaTCAGAGGCATAATAAACGTCCAGCACCGGCATTTTATTAAATCAAAATACTCTATATACGGGGTGTTCAAGTAAATGTTTTTCGACACAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGAttgt > 6:775281/1‑136 (MQ=255)
aaaccaTCAGCGGAATAATAAACTCCCAGCCCCGGAATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 8:635376/136‑1 (MQ=255)
aacaTCTGCGCCATAATAACCGTCCCCCCCCGGCTTTTTTTTAACTCCAACGACTCTATCGTCGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 2:398673/140‑1 (MQ=255)
aacaTCAGCGGAATAATAAACGCCCCGCCCGGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 2:398672/140‑1 (MQ=255)
aacaTCAGCGGAAAAATAAACTTCAACCCCAGTAATTTTATTAAAACCAAAGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 2:1101522/140‑1 (MQ=255)
aacaTCAGCGCCAAAATAACCGCCCACCCCCTGAATTTTATAAAACCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 2:176708/140‑1 (MQ=255)
aTCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGAAAAATATTCCGCATTGCGCCCGTGATTGGTATGAGATTTAACCGGCa > 4:630024/1‑140 (MQ=255)
aTCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATACAACGACTCTATCGACGGGGTGTTAACGTAAATGTTTTTGCACCCGGGCAAAATATTCCGCATTGCGCCCGTGATTGTTATGCGATTTCACCGGCa > 8:850121/1‑140 (MQ=255)
cAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCa > 6:1004947/1‑138 (MQ=255)
cAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCa > 5:240461/1‑138 (MQ=255)
cAGCGGCATAAAAAACGGCCAGCCCCGGAATTTTATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACt < 3:261916/140‑1 (MQ=255)
cGGCATAATAAACGTCCCGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCaatgtg > 7:664444/1‑135 (MQ=255)
cGGCATAATAAACGTCCCGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTATTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACtttt > 2:749221/1‑139 (MQ=255)
gaataataAACGTCCCGCCCGGGAATTTTATTAAATCAAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGAt < 4:183041/138‑1 (MQ=255)
gCATAATACACGCCCCGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGGATGCGATTTAACCGGCACTTTGAt < 8:723449/140‑1 (MQ=255)
gCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACTTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCTCCCGTGATTGGTATGCGATTTACACGGCACTATg > 6:678627/1‑138 (MQ=255)
caaaataaCCGCCCCTCCCCCCCATTTTATAAAATCCAACGACTCTATCGACGGTGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 8:1067681/137‑1 (MQ=255)
cATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 8:734847/140‑1 (MQ=255)
cATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 8:164479/140‑1 (MQ=255)
cATAAAAACCGACCAGCCCCGGAATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 4:716606/140‑1 (MQ=255)
cATAAAAAACGTCCAGCCCCGGAATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 8:333336/140‑1 (MQ=255)
aataataACCTTCCATCCCCGGAATTATATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 2:678511/139‑1 (MQ=255)
aataaaaACCCTCCAGCCCGGCCATTTTTTTAAACCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTGTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGa < 5:799680/137‑1 (MQ=255)
aataaACGTCCAGCCCCGTCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGt < 8:817828/140‑1 (MQ=255)
ataaACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAg > 5:912953/1‑138 (MQ=255)
ccgaccACCCCCGCCATTTTAATAAAACCCACGACTCTATCGACGGCGTGTTCACGTAAATGTTTTTGCAACCAGGCAAAATATTCCGCATTGCGCCCGTTATTGGTATGCGATATAACCGGCACTTTGATCAGTTCaaa < 8:184707/136‑1 (MQ=255)
ccGTCCCGACCCGCCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCAAGGCTAAATATTCCGCATTGCGCCCGTGATTGGTATGAGATTTAACCGGCACTTTGATCAGTTCaaa < 8:801292/139‑1 (MQ=255)
acttCCAGCCCCGGAATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCa < 6:27831/135‑1 (MQ=255)
aCGCCCAGCCCCGGAATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCa < 5:533131/138‑1 (MQ=255)
cGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAAt < 1:866950/140‑1 (MQ=255)
gTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATa > 3:510761/1‑140 (MQ=255)
gTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGAATGGTATGCGATTTAACCGGCACTTTGATCAGTTCAtata > 1:303831/1‑140 (MQ=255)
gTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAAGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATa > 7:251119/1‑140 (MQ=255)
gTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATAGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGAGTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATa > 7:985105/1‑140 (MQ=255)
ccAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATa > 5:265415/1‑138 (MQ=255)
cAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATAc < 5:855403/138‑1 (MQ=255)
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CTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATAC > NZ_CP022686/2546261‑2546536
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
