Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F13 I0 R1
|
235 |
6960.4 |
9135780 |
98.4% |
8989607 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,572,705 |
A→C |
10.6% |
G191G (GGT→GGG) |
CIW80_RS12885 ← |
ROK family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,572,705 | 0 | A | C | 10.6%
| 465.9
/ 9.1
| 239 | G191G (GGT→GGG) | CIW80_RS12885 | ROK family protein |
| Reads supporting (aligned to +/- strand): ref base A (127/80); new base C (4/26); total (132/107) |
| Fisher's exact test for biased strand distribution p-value = 6.40e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 246 total aligned reads displayed.
GGTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAAC > NZ_CP022686/2572567‑2572843
|
gTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCTGTCATCTGTTGATAGCGTTCACTAAAAcc > 5:1024539/1‑140 (MQ=255)
gTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAcc > 1:1135845/1‑140 (MQ=255)
gTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAcc > 2:953186/1‑140 (MQ=255)
tGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTAGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAcc > 3:1111481/1‑138 (MQ=255)
ccAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTg > 7:984839/1‑140 (MQ=255)
aGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGAAAGTTACCAGTCATCTGTAGATAGCGATCACTAAAACCGCTGcc > 2:138525/1‑140 (MQ=255)
aGCGGGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCTCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGcc < 7:730334/140‑1 (MQ=255)
cGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGTCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGACGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAACCCGCTGCCgg > 5:865525/1‑140 (MQ=255)
cGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGaa > 4:1006349/1‑138 (MQ=255)
cGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGATGATAGCGTTCACTAAAACCGCTGCCggca > 3:87601/1‑136 (MQ=255)
cTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACt > 7:400761/1‑140 (MQ=255)
ggCTAAAACGGGCCACCTGCTGCATGGCAAAAGCAACAACACTTTGTGCCTGGTTGACAATCCCCGCAGAATTTAGCAAGTTACCATGCATCTGTTTATATCGTTCACTAAACCCGCTCCCGTAAACAAACGACTCCACg < 6:450350/140‑1 (MQ=255)
ggCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTCCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCa < 4:671482/138‑1 (MQ=255)
cGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTtg > 3:444638/1‑138 (MQ=255)
tgctgcATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCCCGCAGTTGTGTTTGCCg > 3:1046317/1‑138 (MQ=255)
cATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGc > 8:908429/1‑140 (MQ=255)
tGGAACAAGCATCACCACGTTGTGCCTGGGTGACAATCGCCGCAGAAGTGAGCATGTTACCAGTCATCTGTTGATTGCGTTCACAAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGc < 4:515293/138‑1 (MQ=255)
ccacaTGCATCACCCCGTTGGGCGAGGGTGACAATCGCCGCAGAAGTGAGCATGTTACCAGTCATCTGTTGATAGCGTTCACAAAAACCGCTGCCGCAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCaa < 3:336747/137‑1 (MQ=255)
cacaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactg > 2:367021/1‑140 (MQ=255)
cacaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactg > 1:1183558/1‑140 (MQ=255)
tCACCACGTTGTGCCAGGGTGACAATCGCCGCTGAAGTGAGCAAGTTACCAGTCAGCGGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACACCCGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATgg > 6:806535/1‑140 (MQ=255)
tCACAACGTTGTGCCAGGGTGACAATCGCAGCAGAAGTGAGCAAGTTACCAGTCAACTGTTGATAGCGTTCACAAAAACCGCTGCCGGACACAAACGACTCCACGCAGTTGTGATTGCAGCAATAGCAACTGACTGATgg > 2:557931/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACg < 2:92782/103‑1 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 2:404413/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 8:1048669/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 5:234879/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 5:310128/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 1:251827/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGGTTGCCGCAATAGCAACTGACTGATggcc > 5:504826/1‑138 (MQ=255)
caggTTGTGCCAGGGTGACAATCGCCTCAGACGTTAGCATGTTACCTGTCATCTGTTGATCGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 7:681475/137‑1 (MQ=255)
cacTTTGTGCCAGGGTGAAAATCGCCGCATAAGTGAGCAAGTTACATGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 8:179838/140‑1 (MQ=255)
cacTTTGTGCCAGGGGGACAATCCCCGCAGAATGTAGCAAGTTACCAGTCATCTGTTGATAGCGCTCACTAAAACCGCTGCCGGAAACCAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 6:679932/140‑1 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 3:246751/1‑138 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 4:157764/1‑138 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGAAATTAACCAGTCATCTGTTGATAGCGTTCACAAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 1:992428/140‑1 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGAAAGTTACCTGTATTTTGTTGATCGCGTTCAATAAACCCGCGGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 6:609320/140‑1 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCAGAAGAGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCACTAGCAACTGACTGATGGAc > 3:1019359/1‑138 (MQ=255)
aaggTTGTGCCTGGGTGAAACTCGCCGCATAAGTTAGCAAGTTACCAGTAATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 3:603248/135‑1 (MQ=255)
gTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCt > 1:692584/1‑140 (MQ=255)
tgtgCCTGGGTGACAATCGCCGCATAAGTGAGCAAGTAACCAGTCATCTGTTGATAGCGTTCAATAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCt < 4:1154258/138‑1 (MQ=255)
tgtcCCCGGGTGAAAAGGGCCCCATATGTTAGAAAGTTACCCGTCATCTGTTGATTGCGTGCAAAAAAACGGCCGCCGGAACAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc < 7:943462/140‑1 (MQ=255)
tgggCCTGGGTGAATAGCGCCGATGAAGTTCGCATTTTACCTGTCATCTGTTGATTGCTTTAACTAAAAGCGCTGCGGCAAACAAACGACTCCACGCAGTTGTGTTTGCCGAAATAGCAACTGACTGATGGACCATCTTc < 2:251827/137‑1 (MQ=255)
gCCAGGGGGACAATCGCCCCCGACGTGAGCATGTTACCAGTCATCTGTTGAACGCGTTCACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTcc < 4:899440/138‑1 (MQ=255)
cccAGGGTGACAATCGCCGCAGAAGTTCGCAAGTTACCTGTCATCTGTTGATAGCGTTCAAAAAACCCGCGGCCGAAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 1:205689/139‑1 (MQ=255)
ccAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGATGTGTTTGCCGCAATAGCAACTGACTGAAGGACGATCTTCCAGc > 1:939847/1‑140 (MQ=255)
ccAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTAGCCGCAAGAGCAACTGACTGATGGACCATCTTCCt > 4:1070073/1‑138 (MQ=255)
ctgggTGACACTCGCCGCCTAAGGTCCCATGTTACCAGTCATCTGTTTAATGCGTGCACTAAAGCCGCTGCAGTAACCAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 7:325836/138‑1 (MQ=255)
ccgggTGACAATCGCCGCCCAAGTGAGAAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 2:756137/138‑1 (MQ=255)
ccgggTGACAATCGCCGCATAAGTGCGCACTTTACCAGTCATCTGTGTATAGCGTTCAATAAACACGCGGCCGCAAACACACGACTCCACGCAGTTGTGTTTGCCGAAATAGCAACTGACTGATGGACCATCTTCCTg < 3:624049/136‑1 (MQ=255)
cAGGGTGACAATCGCCGCTGAAGTGAGAAAGTTACCAGGCATCTGTTTATAGCGTTCACTAAAACCGCTGCCGCAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 5:365489/140‑1 (MQ=255)
ggTTACAATCGCCGAATAAGTGAGAAATTTACCAGTCATCTGTTGATAGCGTTCAATAAACCCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTc < 3:96274/138‑1 (MQ=255)
ggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCg > 1:8969/1‑140 (MQ=255)
tGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCg < 4:246751/138‑1 (MQ=255)
tGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCg > 3:141448/1‑138 (MQ=255)
ggACAATCGCCGCAGAAGTGACCAAGTAACCAGTCATCCGTTGAACGCGTCCACTACACCCGCCGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGCCCATCTTCCTGCTCCg < 4:92362/137‑1 (MQ=255)
aaTCCCCGAAGAAGTCAGCATGTTACCAGTCATCTGTTGTTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATTGACCATCTTCCTGCTCCGTATAGc < 6:521950/140‑1 (MQ=255)
gcggcAGAAGGGAGCAATTTACCTTTCATCTGTTTATCGCGTTCAATAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCt < 3:688890/135‑1 (MQ=255)
ccgcAGACGTGAGCATGTAACAAGTCATCTTTTGATAGCGTTCAATAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGc < 8:842543/140‑1 (MQ=255)
ccgcAGAAGTGACAAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTg < 4:782475/138‑1 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCAGCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 7:190950/1‑140 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCCCGCAGTAGTGTTTGCCACAATAGCCACTGACTGATTGACCAACTTCCTGCTCCGTATAGCAAGGCAAAGTGATATg > 5:231700/1‑140 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 7:113749/1‑140 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGGTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 7:220884/1‑140 (MQ=255)
ccaattaaCCATTAATATGTTGATACCGTTCACTAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGa < 1:1005317/133‑1 (MQ=255)
cAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTGGTGTTTGCAGCAATAGCACCTGACTGCTGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGAGATATGAc > 8:528815/1‑140 (MQ=255)
cAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 3:1002246/1‑138 (MQ=255)
ttACCTGTCATCTGTTGATAGCGTTAACTAAAACCGCTGCCGTAAACAAACGACTCCACGCAGGTGTGTTTGCCGCAATAGCAACTGACTGAGGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCa < 8:427425/140‑1 (MQ=255)
gtaagcTGTTAATTGCTTTCACTAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCGTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCg < 4:459449/133‑1 (MQ=255)
gTCATCTTTTGATAGCGTTCACTAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc < 1:503734/140‑1 (MQ=255)
gTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc > 5:60368/1‑140 (MQ=255)
aTCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGCTGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGCCCGCAGTCGgccgc > 6:543095/1‑140 (MQ=255)
aTCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagc > 1:346418/1‑140 (MQ=255)
aTCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagc > 5:453053/1‑140 (MQ=255)
tCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACACCACGCAGGTGTGTATTCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCAATGCAACGTGATATGACCGCATTCGgcagca > 6:161194/1‑140 (MQ=255)
cTGTTTATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCAt < 6:1070005/140‑1 (MQ=255)
cTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTAGgcagc > 4:633298/1‑138 (MQ=255)
atGTTTATAGCTTTAACTACAACCGCTGCAGTAAACAAACGACTCCACGCATTTGTGTTTGCCGCAATATCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCTGCAGCAt < 6:927066/139‑1 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCTCGCAGTTGTGTTTGCCGCAAAAGCAACTGACTGATGGACCATCTACCTGCTCCGAATAGACTTCCAACGTTAAATGACCGCATTCGGCAGCATTTcccc > 7:332703/1‑140 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTcccc > 7:10387/1‑140 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTcccc > 6:390604/1‑140 (MQ=255)
aGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 8:93037/80‑1 (MQ=255)
aGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGAATGATGGACAATCTTCCTGCTCCGTATAGCCTGGCTACGTGATATGACCGCATTCGGCAGCATTTCCCAAg > 8:644853/1‑140 (MQ=255)
gCGTTCACTACACCCGCTCCCGGCAACAAACGACTCCACGCAGTTGTTTTTGCCGCAATATCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgt < 2:948444/140‑2 (MQ=255)
gCGTTCACAAAAACCGCGGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 7:435089/140‑1 (MQ=255)
gCGTTAACTAAACCCGATCCCGAAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 2:81404/140‑1 (MQ=255)
gCGTCCAATAAAACCGCGGCCGCAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 1:579528/140‑1 (MQ=255)
gCGTACACTAAACCCTGTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 7:910008/140‑1 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAg > 3:1136922/1‑138 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc > 5:966348/1‑140 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc > 5:726963/1‑140 (MQ=255)
gTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTACGTATAGCCTGGCAACGTGATATGACCGCATTCTGCAGCATTTCCCCCGGcc > 8:168370/1‑140 (MQ=255)
gTTCAAAAAAACCGCTCCCTGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 4:380398/138‑1 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGCACGCGTTCGGCAGCATTTCCCCAGGcc > 4:714995/1‑138 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCCTTTCCCCAGGcccc > 5:281107/1‑140 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCGCAGGcccc > 8:286237/1‑140 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGcccc > 1:1057616/1‑140 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGATCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGcccc > 6:843392/1‑140 (MQ=255)
aaaCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATaaa < 2:1057616/140‑1 (MQ=255)
aCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc > 8:784281/1‑114 (MQ=255)
aCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc < 7:784281/114‑1 (MQ=255)
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GGTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAAC > NZ_CP022686/2572567‑2572843
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
