Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F13 I0 R1
|
230 |
5035.0 |
9125430 |
98.4% |
8979423 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,572,705 |
A→C |
11.9% |
G191G (GGT→GGG) |
CIW80_RS12885 ← |
ROK family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,572,705 | 0 | A | C | 11.9%
| 413.4
/ 13.5
| 226 | G191G (GGT→GGG) | CIW80_RS12885 | ROK family protein |
| Reads supporting (aligned to +/- strand): ref base A (118/75); new base C (2/30); total (120/106) |
| Fisher's exact test for biased strand distribution p-value = 1.95e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 230 total aligned reads displayed.
GGTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAAC > NZ_CP022686/2572567‑2572843
|
gTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACAACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGATACCAGTCATCTGTTGATAGCGTTCACTAAAAcc > 4:671315/1‑140 (MQ=255)
ttGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCg < 6:511561/140‑1 (MQ=255)
tGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGACGCAGACGGGAGCAAGTTACCAGTCATCTGGTGATAGCGTTCACTAAAAcc > 7:631778/1‑138 (MQ=255)
tGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACATGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAcc > 7:718184/1‑138 (MQ=255)
cgCGTGCGGGCAAGCTGTTGGCGAACACGTGCCAACTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGAAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGcc < 2:357255/139‑1 (MQ=255)
aGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGcc > 1:247838/1‑140 (MQ=255)
cGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCgg > 1:1181799/1‑140 (MQ=255)
tGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCgg > 7:837570/1‑138 (MQ=255)
ggCTAAACCGTGCCCCCTGATGCATGCCACAAGCATCCCACCTTTGTGCCAGGGGGACAAGCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGTAAACAAACGACTCCACg < 2:736849/140‑1 (MQ=255)
ggCTAAAAGGTCCAACCTGCGGCATGGAACAAGCATCACCACGTTGTGCCAGGGTTACAATCGCCGCAGAAGTGAGCACGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACg < 6:977540/140‑1 (MQ=255)
ggCTAAAACGGGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTCCCAGGGTGACAATCGCCGCATAAGTGAGCATGTTACCAGTCATCTGTTGATCGCGTTCAATAAAACCGCTGCCGTAAACAAACGACTCCACg < 2:431029/140‑1 (MQ=255)
ggCGAAACCTGGCCACGGTCTGAAGGGCAAAAGCTTCACCCCTTGGTGCCTGGGTGAAAATCGCCTCAGAAGTGAGCAAGTTACAATTATTATGTTTTTAGCGTTCCCTAAAACCTATTCCGGATACAAACGACTCCa < 8:892250/138‑1 (MQ=255)
ggCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGCCAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAATCAAACGCCTCCagg > 6:531347/1‑138 (MQ=255)
ggCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACg > 5:632516/1‑140 (MQ=255)
aaaacCGTGCCACCTGCTGCATGGCAAAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCCGGCATCTTTTTATAGCGTTCACTAAAACCGCTGCCGGAAACACACGACTCCACGc < 8:5350/137‑1 (MQ=255)
aaaaCGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGt > 1:1088352/1‑140 (MQ=255)
tGCCACCTGCTGAATGGCAAAAGCATCACCCCGTTTTGCAAGGGTGACAATCCCCGCTGATGTGAGCAAGTTACCTGTCATATGTTTATAGCGTTCACTAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTtgtg < 8:307488/138‑1 (MQ=255)
ggCCACCTGCGGCATGGCACAAGCATCACCCCGTGGTGCCAGGGGGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTTATAGCGTTCACTAAACCCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGtt < 2:1025696/139‑1 (MQ=255)
tgcATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACACACGACTCCCCGCAGTTGTGTTTGCCGCAATa > 3:753970/1‑140 (MQ=255)
gggCACAAGCATCACCACGTTGGGCCAGGGTCACAATCGCCCCAGAAGTGAGCAAGTTACCTGGCATCTGTTGATCGCGTTAACTAAACCCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCaa < 3:1116874/139‑1 (MQ=255)
ggCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAACCCGCTGCCGGAAACAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAac > 3:77678/1‑140 (MQ=255)
ggCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCaa > 3:634048/1‑139 (MQ=255)
ccacaAGCATCACCAGGTGGGGCCTGGGTGAAAATCGCCGCAGATGTGAGCAAGTTACCAGTCATGTGTTTATAGGGTTCACTAAAACCGCTGCGGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAact < 2:174550/139‑1 (MQ=255)
cacaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTACAACCGCTGCCGGAAACAAACGCCTCCACGCACTTGTGTTTGCCGCAATAGCAactg > 4:759082/1‑140 (MQ=255)
gCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAActgactga > 3:578080/1‑140 (MQ=255)
gCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAActgactga > 6:854977/1‑140 (MQ=255)
aTCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAAAAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAActgactga > 8:1062116/1‑138 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 4:165807/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 1:6788/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 3:245689/1‑140 (MQ=255)
cccGTTGTGCCTGGTGTAAATTCGCCGCATAATTTAGAAAGTCACCCGTCTTATGTTGATCGCGTGAACTAAAACCGCTGCCGTAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 8:948211/136‑1 (MQ=255)
caggTTGTGCCTGGGTGAATATGTCCGCAGATTTTTGCATTTTACATGTCATATTTTGATAGGTTTTAATAACACGGCTGCGGTTAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 8:140220/135‑1 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 7:211844/1‑138 (MQ=255)
cacGTTGGGCCAGGGTGACTCTCGCCGCAGAATTGATCACGTTACCAGTCATCTGTTCATAGCGTTCACTAAACCCGATGCAGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 5:929291/140‑1 (MQ=255)
tgtgCCTGGGTTACAAACGCCGCAGATGTTTCCATTTAACCAGTCATATGTGCATAGGTTTCACAAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc < 3:817163/140‑1 (MQ=255)
tgtgCCAGGTTGACAATCGCCGCAGACGTGCCCACGTTACCAGTCTTCTGTTTATAGCGTGCACTAACCCCGCTGCCGGAAACACACGACTCCACGCAGTTGTGGTTGCCGCAATAGCAACTGACTGAGGGACCATCt < 8:219634/138‑1 (MQ=255)
tgtgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc > 1:598914/1‑140 (MQ=255)
tgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCt > 6:555360/1‑140 (MQ=255)
gacAGGGTGAAAAGCGGATCAGAAGTCAGCAAGTAACCAGTCTACGTTTGATAGAGTTCAATAAAACCTCTTCCGGAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGAAACTGACTGATGGACCATCTTca < 8:676136/136‑2 (MQ=255)
gCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTcc > 7:86667/1‑138 (MQ=255)
cgctgggTGTCAAGCGCCGCATACTGGAGCATGTTACCCGCCATTTGTTTAGAGGGTTCACAAAAACGGCTCCCTGAAACAAACGACTCCACGCAGGTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 6:625403/136‑1 (MQ=255)
ccATGGTTACAATCGCCGCTGAAGTGATCACGTAACCATTAATCGTTTTATTGCTTTAAATAAAACCTCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGc < 4:955578/140‑1 (MQ=255)
ccAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCCCTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCt > 7:939332/1‑138 (MQ=255)
ccAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAACGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGCCAGATGGACCATCTACCt > 8:495639/1‑138 (MQ=255)
ctggttGACAATCGCCGAACAATTGAGCAAGATACCAGTCATCTCTATATAGCGATCAATAAAACCGCTCCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 4:512008/135‑1 (MQ=255)
ctgggTGACAACGGCCCCAGATGTGTCCAAGTAACCAGTCATCTGTTCAACCCGTTCACAAAAACCGCGGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 8:421586/136‑1 (MQ=255)
ctggctGACAAGCCCCGCCGACGTCAGAAAGATACCAGTCATCTGTCGATCCCGTCAACTAAAACCGCGCCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 2:316957/135‑1 (MQ=255)
cAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 3:895107/140‑1 (MQ=255)
cAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 4:437326/140‑1 (MQ=255)
cAGGGGGAAAAGCGCCGCAGACGTCAGCATGTTACCAGGCATCTGTTTATCGCGTTCACTAAAACCGCTGCCGTACACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 3:126887/140‑1 (MQ=255)
aGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 7:136801/1‑127 (MQ=255)
gggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTcc > 5:79840/1‑140 (MQ=255)
ggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCg > 1:136346/1‑140 (MQ=255)
ggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCg > 4:125671/1‑140 (MQ=255)
ggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACAATCTTCCTGCTCCg > 5:410961/1‑140 (MQ=255)
tGACAATCGCCGAAGAAGTGAGCAAGTAACCAGTCATCTGTTTATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGta < 2:1102196/140‑1 (MQ=255)
aCAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTTTTTGc < 2:866839/97‑1 (MQ=255)
aCAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGtata > 2:229420/1‑140 (MQ=255)
aCAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTATGCCGAAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGtata > 4:418822/1‑140 (MQ=255)
aaTCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGc < 4:1022433/140‑1 (MQ=255)
gccgccTAAGTGAGCATGTTACCAGTCATCTGTTTATAGCTTTCACTAAACCCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTgg < 4:589626/140‑1 (MQ=255)
ccgcAGAAGTAAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCAGGAAACAAACGACTCCACGCAGTTGTGTTTTCCGAAATAGCAAATGCCTGATGGACCATCTTCCTTCTCCGTATAGCCTgac > 5:625585/1‑138 (MQ=255)
gcatatgTGAGCATGTTACCAGTCAGCTGTTTATAGCGTTCAATAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGc < 7:542278/132‑1 (MQ=255)
gcAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGc > 7:971693/1‑138 (MQ=255)
cAGATGTTAGCAAGTTCCCAGTCATCTGTTTATAGAGTTCACTAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCa < 8:582413/138‑1 (MQ=255)
agattttaGCAAGTACCCAGTCAGCTTTTGATAGCGTTCACTACAACGCCTCCGGTAAAAACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACg < 2:795041/133‑1 (MQ=255)
gAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGCCTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAAc > 8:840865/1‑138 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTAGTGTTTGCCGCAATAGCAACTGACTGATGGACAATCTTCCTGCTCCGTATACCCAGGAAACGAGATATg > 6:990387/1‑140 (MQ=255)
aGCAAGTTACCAGTAATCTGTTGATAGCGTTAACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGTTGTGATTGCCGCAATAGCCACTGCCTGATGGACAATCTTCCTGCTCCGTATAGCCTGGCCACGTGATATg > 2:650473/1‑140 (MQ=255)
ttACCAGTCATAGGGTGATAGCGGGCACTAAACACGCTGCGGTAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCACCTGTCTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGAcct < 8:728831/138‑2 (MQ=255)
tACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGc > 7:29098/1‑138 (MQ=255)
gtaaTCTGTTGATAGCGTTCAATAACACCCCTCCCGTAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc < 4:1114985/137‑1 (MQ=255)
gTCATTTGTTTATAGGGTTAAATAAAACGGCTGCCGTAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc < 5:129928/140‑1 (MQ=255)
gTCATCTGTTGATAGCGTTCCCTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc > 3:289814/1‑140 (MQ=255)
cATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACACTCTTCCAGCTCCGTATAGCCTGGCAACGTGATATGACAGCATTCGgc > 7:78873/1‑138 (MQ=255)
aTCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGCCCGCATTCGgcagc > 2:512515/1‑140 (MQ=255)
aTCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagc > 4:405064/1‑140 (MQ=255)
aTCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACACTCTTCCTGATCCGAATCGCCTGGCAACGTGAGATGACCGCATTCGgcacc > 1:49941/1‑138 (MQ=255)
tCTGTTGATAGCGTTCACTAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcag < 8:757003/138‑1 (MQ=255)
tttttGATAGGGTTCAATAATACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCAt < 3:671315/137‑1 (MQ=255)
cTGTTGATCCCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCAt < 5:481236/140‑1 (MQ=255)
cTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAACCGACTCCCCGCAGTTGTGTTTGCCGCAATAGCCACTGCCTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCCTTCGgcatc > 7:533780/1‑136 (MQ=255)
cTGTTCATATCGTTCACTAAAACCTCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCAt < 2:1090637/140‑1 (MQ=255)
gttcgCGTTCACTCAACCCGCTGCCGCAAACAAACGACTCCACGCAGTGGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTccc < 5:311507/136‑1 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCACTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGCCCGCATTCGGCAGCATTTcacc > 1:835492/1‑140 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt > 2:560432/1‑92 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTcccc > 6:1066402/1‑140 (MQ=255)
aGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCAGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAg > 2:88828/1‑140 (MQ=255)
gctttCAATCAAACCCCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTTATATGACCGCATTCGGCAGCATTTCCCCAgg < 5:384556/137‑1 (MQ=255)
gCGTTCACTAAAACGGCTGCCGTAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 1:379677/140‑1 (MQ=255)
gCGTTCACAAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 3:841904/140‑1 (MQ=255)
gCGATCACTAAAACCGCTGCCGCAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 3:35412/140‑1 (MQ=255)
ccgatcccTAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 6:19137/133‑1 (MQ=255)
cggacacaAAACCCGCTCCCCGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTCTAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc < 1:372210/136‑1 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGGTATGACCGCATTCGGCAGCATTTCCCCAGGc > 1:671038/1‑140 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc > 2:940510/1‑140 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc < 3:405064/140‑1 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAGCGTGATATGACCGCATTCGGCAGCATTTCCCCAGGcccc > 5:1119983/1‑140 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGcccc > 3:984805/1‑140 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGcccc > 2:987038/1‑140 (MQ=255)
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GGTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAAC > NZ_CP022686/2572567‑2572843
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
