Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F36 I0 R1
|
179 |
8076.5 |
8499890 |
98.3% |
8355391 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,572,705 |
A→C |
11.5% |
G191G (GGT→GGG) |
CIW80_RS12885 ← |
ROK family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,572,705 | 0 | A | C | 11.5%
| 360.0
/ 11.7
| 201 | G191G (GGT→GGG) | CIW80_RS12885 | ROK family protein |
| Reads supporting (aligned to +/- strand): ref base A (111/62); new base C (2/26); total (113/88) |
| Fisher's exact test for biased strand distribution p-value = 6.84e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 209 total aligned reads displayed.
GGTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAA > NZ_CP022686/2572567‑2572842
|
ggTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAc > 3:409958/1‑140 (MQ=255)
ggTTGCCAGCGTGCGGGCAAGCTGTAGGCCAAAACGTGCCACCTGCTGCATGTCACAATCATCAACACGTGGTGCCAGGGTGACAAACGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAacac > 3:876616/1‑140 (MQ=255)
gTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAcc > 5:69499/1‑140 (MQ=255)
gTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAcc > 6:525714/1‑140 (MQ=255)
gTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAcc > 2:30465/1‑140 (MQ=255)
gTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCAACACCACTTTGTGCCAGGGTGACAATCTCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGAGTTCACTAAAccc > 2:841421/1‑140 (MQ=255)
ttGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAc > 7:785019/1‑138 (MQ=255)
tGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTACCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAcc > 7:730198/1‑138 (MQ=255)
ccAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGGCCTCTGTTGATAGCGTTCACTAAACACGCTg > 2:421471/1‑140 (MQ=255)
tGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGaa > 6:123429/1‑140 (MQ=255)
gTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACt > 7:510443/1‑138 (MQ=255)
ggCTAAACCGGGCCACCTGCTGCATGGCACAAGCATCACCCCGTTGTGCCTGGGTGACATTCGCCGCAGACGTGAGCAAGTTACCAGTCTTCTGTTGATAGCGTTAACTAAACCCGCTGCCGGAAACAAACGACTCCACg < 3:28484/140‑1 (MQ=255)
ggCGAAAACGTGCCACCGGCTGCAGGGCACAAGCATCACCACGTTGTGCCTGGGTGACAATCGCCGCATAAGTGAGCAAGTTACCCGTCATCTGTGGATTGCGTTCACTAAAACCGGGGCCGGAAACACACGACTCCACg < 4:1065766/140‑1 (MQ=255)
tGCCACCTGCGGCATGGCACAAGCATCCCCACGTGGTCCATGGGTTACAAGCGCCGCAGACGGGAGCACGTTACCAGTCATGTGTTGATTGCGTGCACTAAAACGGCTGCGGGAAACAAACGACTCCACGCAGTtgtg < 8:11226/138‑1 (MQ=255)
gctgctTGGCACAAGCAGCACCCCGGTGTGCCAGGGTGACAAGAGCCGAATAAGTGAGCAAGTTCCCCGTCATCTGTTTATAGGGTTCACTAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCaa < 6:490132/140‑1 (MQ=255)
tgcATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATa > 1:1010499/1‑140 (MQ=255)
tGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCACTAGCaa > 1:540079/1‑140 (MQ=255)
gcccatgCATCACCACTTTGTGCATGGGGGACAAGCGCCCCAGATGTTCTAAAGTTACCAGTCATGGGTTGATAGCTTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAact < 4:638285/134‑1 (MQ=255)
gCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTTATAGCGTGCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAact < 2:1096413/140‑1 (MQ=255)
cacaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATTGCGTTCACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCGGCAATAGCAactg > 6:869890/1‑140 (MQ=255)
cacaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactg > 3:129787/1‑140 (MQ=255)
aaGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactgact > 3:441380/1‑140 (MQ=255)
ccccggTTGTGCCAGGGCGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTCATAGCGTGCAATAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 6:362422/135‑1 (MQ=255)
accacGTTGTGCCAGGGTGATAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 3:977834/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCACCTGACTGATGGAc > 1:809396/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGCCTGATGGAc > 5:281458/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 5:911889/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 6:159335/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 6:292590/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 6:332810/1‑140 (MQ=255)
caggTTGTGCCTGGTTTAAAATCGCCCCATATTTGAGCATGTTACCAGTAATCTGTTTATAGCGTTCACTAAAACCGCGGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 6:782951/137‑1 (MQ=255)
cacTTTGTGCCTGGGTTACAATCGCCGCAGATGTCAGCACTTTCCCAGTAATCTTTTGATAGCGTTCACTAAAACCGGTGCCGGAACCAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 7:577592/138‑1 (MQ=255)
cacGTTGTGCCTGGGTGACAATCGCCGCAGAAGTGAGCATGTTACCAGTCATCTGTTTATAGCGTACACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 1:656219/140‑1 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCATAAGTTAGCAAGTTACCAGTCATCTGTTGATAGCCTTCACTAAAACCGCTGCCGGCAACAAACGACTCCCCGCAGTTGTGGTTGCCGAGATAGAAGCTGCCTGATGCAc > 8:834455/1‑138 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 8:515159/1‑138 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTAACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCACATGACTGATGGAc > 8:684751/1‑138 (MQ=255)
cacGTTGTGCCAGGGTGAAAACCGCCGCAGAAGTGAGCAATTAACCAGTCATCTGTTGATAGCGTTCAAAAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 1:585460/140‑1 (MQ=255)
aacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCCACTGACTGATGGAc > 8:636886/2‑138 (MQ=255)
cGTTGTGCCAGGGTGACAATCGCCGCAGAAGTCAGCAAGTTACCAGTCATCTGTTGATAGAGTTCACTAAAACCGCTGCCTGAAACAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCagc > 2:970770/1‑138 (MQ=255)
gTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCt > 5:520958/1‑140 (MQ=255)
ttGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCtt > 2:378938/1‑140 (MQ=255)
tgtgCCTGGGTGACAAGCGCCGCATAAGTGCGCAAGTTACCAGTCATCTGTTCATTGCGTGCACAAAACCCGCTGCCGTAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc < 5:91740/140‑1 (MQ=255)
tgggCCAGGGGTACAATCGCCGCAGACTGCAGCACCTTACCCGTCAGCTGTTGACAGCGTGAACTACCCCCGCGGCCTGACACCAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCt < 8:60216/135‑1 (MQ=255)
tgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCt > 6:536909/1‑140 (MQ=255)
gCCTGGGTGACAATCGCCGCAGACGTGAGCAAGTTCCCAGTCATCTGTGGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTcc < 8:479501/138‑1 (MQ=255)
gCCAGGGTTACAATCGCCGCAGAAGTGAGCATTTTACCTGTCATCTGTTGATTGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 6:91816/140‑1 (MQ=255)
gCCAGGGTGAAAATCGCCGCAGATGTGTGCAATTTACCAGTCTTCTGTTGATAGCGTTAACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTcc < 7:314594/138‑1 (MQ=255)
cccAGGGCGACATGCCCCGCCCATGTGACCAATTTACCCTGCATAGGTTGACAGCGTGCAATAAACCCCCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 3:303107/139‑1 (MQ=255)
ccAGTGTGACAATGGACGCTTAAGCTAGCAAGTTCCCAGTCCTCTTTTGTTAGCGTACAATAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCt < 7:72343/138‑1 (MQ=255)
ccAGGGTGACAATCGCCGACTATGTGAGCAAGTTACCAGTCAGTGGTTGATAGAGTTCAATAAAACCGCTGCGGGAACAAAAGTACTCCACGCAGTTGTGTTTGCAGCAATAGCAACTGACTGATGGACCATCTTCCTGc < 5:982449/140‑1 (MQ=255)
cAGGGTGCCACTCGCCGCAGAAGTGAGAAAGTTCCAAGTCATCTGTTGATAGCGCACTGTAAAACCGCTGCCGGAAACAAACGTCTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAACATCTTCCTGCt < 4:417415/140‑1 (MQ=255)
cAGGGTGACAATCGCCTCATAAGTGATCAATTTACCAGTCATCTGTTGATTGCGTTCACTAAAACCGCTTCCGGAACCACACGACTCCACGCAGTTGTTTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 4:822569/140‑1 (MQ=255)
cAGGGTGACAATCGCCGCACAAGCGAGCAAGTTACCAGTCATCTGTTGATAGCGTGCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 4:385742/140‑1 (MQ=255)
cAGGGTGACAATCGCCGAAGACGTTAGCATGTAACCAGTCATCTGTTGATCGCGGTCACTAACACCGCGGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 2:75042/140‑1 (MQ=255)
aGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTAATCTGTTGATAGCGTTCACTAAAAACGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAAGTGACTGATGGACCATATTCGTGc > 8:925405/1‑138 (MQ=255)
ggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGCCTGATGGACCATCTTCCTGCTCCg > 5:187059/1‑140 (MQ=255)
ttaCAATCGCCGCATAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAACCCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGta < 2:241476/138‑1 (MQ=255)
tGACAATCGCCGCAGAAGTGAGCACTTAACCAGTCATCTGTTTATAGCGTTCACAAAAACCTCGGCCGGAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGta < 5:772033/140‑1 (MQ=255)
ggACAAGCGCCGCATAAGTGAGCAATTAAACAGTCATATGTTGATAGCTTGCACTAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGta < 4:920125/139‑1 (MQ=255)
aCAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGtata > 1:303147/1‑140 (MQ=255)
aCAATCGCCGCAGAAGTGAGCAAGTTACAAGTCATCTGGTGATACCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGtata > 5:76412/1‑140 (MQ=255)
aaTCGCGCCAGATGTGAGAATTTTACCATTCATCTGTTGATAGGTTTCACTAAACCCTATGCCTGAAACACACGACTCCACGCAGTTGTGTTTGCGGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGc < 6:634885/140‑1 (MQ=255)
aaTCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGtata > 8:226554/1‑138 (MQ=255)
ccgcAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGcc > 6:986711/1‑58 (MQ=255)
gcAGAAGTGAGCAAGTTACCAGTCATCTGTTGATCGCGTTCACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCaa < 4:766822/140‑1 (MQ=255)
cAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAAc > 3:19763/1‑140 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCTCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAAATGACTGATGGACCATATTCCTGATCCGTATCGCCTGGCTACGGGATATg > 5:607872/1‑140 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGGTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCACCGTGATATg > 3:737053/1‑140 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 1:145735/1‑140 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 6:915650/115‑1 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 3:677964/1‑140 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGGTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCACCGTGATATg > 4:595515/1‑140 (MQ=255)
cAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCa > 7:573857/1‑62 (MQ=255)
cAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCATTAGCAGCTGCCTGATGGACCATCTTCCTGCTACGTATAGCCTGGCAACGTGATATg > 7:241038/1‑138 (MQ=255)
cAAGTTACCAGTCATCAGTTGATAGCGTTCACTAAAACCGCGGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCCCAATAGCAACTCACTGATGGACAATCTTCCAGCTCCGTATAGCCTGGCAACGGGatatt > 7:657880/1‑137 (MQ=255)
gTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCgg > 2:710542/1‑139 (MQ=255)
ttACAAGTCATATGTTCAACCGGTTCCCTAAAACCGCGCCCTGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCg < 7:621518/138‑1 (MQ=255)
tACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGc > 8:792085/1‑138 (MQ=255)
tACCAGTCATCTGTTGAAAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGc > 8:503405/1‑138 (MQ=255)
aCCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGCCTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCAtt > 1:977089/1‑140 (MQ=255)
aCCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCAtt > 1:187836/1‑140 (MQ=255)
ttCATCTGTTGATACGGGTCACAAAAACCGCGGCCTGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc < 2:927040/139‑1 (MQ=255)
gTCATCTGTTTATAGCTTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc < 5:1018124/140‑1 (MQ=255)
aTCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagc > 5:398867/1‑140 (MQ=255)
tCTGTTGATAGCGTTCACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagca < 4:7321/140‑1 (MQ=255)
tCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGCCCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagca > 5:860711/1‑140 (MQ=255)
cTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagc > 7:51199/1‑138 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGc > 1:368171/1‑65 (MQ=255)
aGCGTTCACTAAACCCGCTGCGGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTcccc < 8:434170/138‑1 (MQ=255)
gtgtgcccTAAACCCGCGCCCGTAAACAAACGACTCCACGCAGTTGAGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 5:745079/133‑1 (MQ=255)
gCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 2:576746/140‑1 (MQ=255)
gtttCAATAAACCGGCTGCCGGAAACACACGACTCCACGCAGGTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc < 6:191229/138‑1 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCAACGGATAGCCTGGCAACTTGGTATGCACTCATTCGGCATCATTTcccactgc > 1:873606/1‑135 (MQ=255)
ttCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc > 8:311103/1‑138 (MQ=255)
tCACTAAGACCGCTGCCGGAAACAAACGACTCCACGCAGGTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATAAGACCGCATACGGCAGCATTTCCCCAGGcccc > 6:311271/1‑140 (MQ=255)
caaCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGGCGCAATAGCAACTGACTTATTGACCATCTTCCTGCTACGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATaaa < 4:14521/139‑1 (MQ=255)
aaaCCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATaaa < 1:84705/140‑1 (MQ=255)
aaaCCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATaaa < 5:123429/140‑1 (MQ=255)
aaaCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCATCGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATaaa < 3:626107/140‑1 (MQ=255)
aaaCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATaaa < 3:459139/140‑1 (MQ=255)
|
GGTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAA > NZ_CP022686/2572567‑2572842
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
