Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F2 I0 R1
|
233 |
6461.8 |
9239822 |
98.3% |
9082745 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,572,705 |
A→C |
10.0% |
G191G (GGT→GGG) |
CIW80_RS12885 ← |
ROK family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,572,705 | 0 | A | C | 10.0%
| 441.9
/ 8.3
| 224 | G191G (GGT→GGG) | CIW80_RS12885 | ROK family protein |
| Reads supporting (aligned to +/- strand): ref base A (120/75); new base C (4/25); total (124/100) |
| Fisher's exact test for biased strand distribution p-value = 1.24e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 229 total aligned reads displayed.
TGGTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAAC > NZ_CP022686/2572566‑2572843
|
ggTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAc > 4:748461/1‑140 (MQ=255)
gTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCTCGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAcc > 1:852209/1‑140 (MQ=255)
gTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAcc > 1:229382/1‑140 (MQ=255)
gTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAcc > 8:500050/1‑140 (MQ=255)
gTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAcc > 3:829426/1‑140 (MQ=255)
tGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAcc > 6:394883/1‑138 (MQ=255)
aGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGTTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGcc > 8:596136/1‑140 (MQ=255)
cGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCgg > 8:574396/1‑140 (MQ=255)
cGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCgg > 1:1192730/1‑140 (MQ=255)
cGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGATGATAGCTTTCACTACACCCTCTGcccg > 3:612993/1‑138 (MQ=255)
tGCGTGCAAGCTGTTGGAGAAAACGTGCCTCCTGCTGCATTTCACAAGCATCTACACTTTGTTCGAGGGTTACAATAGGCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGATTTCACTAAAACAGCTGACTGaa > 2:749280/1‑140 (MQ=255)
gCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGTGTGACAATCGCCGCAGATGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAACCCTCTGCCGGaaacaaa > 2:166784/1‑140 (MQ=255)
ggCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACAAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACg > 4:699593/1‑140 (MQ=255)
ggCGAAAACGTGCCACCTGCTGCATGGAACAAGCATCACCACGTTGTGCAAGGGTGACTATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACGCCACg > 1:372066/1‑140 (MQ=255)
taaaaCGTCCCACCTGCTGCAGGGCAAAAGCATCACCACGTGGGGCCAGGGTTACAAGCGCCGCATAAGTGAGCAATTTACCAGTCATCTGTTGATAGCGTCCAAAAAAACCGCTGCCGCAAACAAACGACTCCACGc < 6:807020/137‑1 (MQ=255)
gCCACCTGCTGCATGGCACAAGCCTCACAACGTTGTGACAGGGTGACAATCGCCGCAGAAGTGATCAAGTTACCAGTCATCGGTTGATAGCTTTAACTAAAACCGCTGCCGGAAACAAACGACTCCCCGCAGTTGTGttt > 7:366736/1‑140 (MQ=255)
ctgctgCAGGGAACAACCATCCCCCCGTGGTGCCTGGTTGCCACTCGCCGCATATGGTAGCAAGTTACAAGGCAGATGTTTATAGCTTTCACTAAACCCCCTGCCGGCAACAAACGACTCCACGCAGTTGTGTTTGCCGc < 7:86626/140‑1 (MQ=255)
ctgcATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTTTTGATAGCGTTCACTAAACCCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAAt < 8:188811/140‑1 (MQ=255)
ctgcATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCaaa > 4:1073378/1‑139 (MQ=255)
gcATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAACCCGCAGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAAt > 5:1140503/1‑138 (MQ=255)
cacaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAcctg > 1:1093545/1‑140 (MQ=255)
cacaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactg > 1:1009550/1‑140 (MQ=255)
cacaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactg > 7:997071/1‑140 (MQ=255)
cacaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactg > 2:476893/1‑140 (MQ=255)
caAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactgac > 7:640520/1‑140 (MQ=255)
aTCACCACGTTGTGCCAGGGTGACAATCGCCGCATAAGTGAGAAAGTTACCAGTCATCTTTTTATAGCGTTCAATAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATg < 4:164125/140‑1 (MQ=255)
accacGTTGTGCCTGGGTGACAATCGCCGAAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATgg < 5:166295/138‑1 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 1:100321/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 1:1138635/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 1:321784/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGACGGAAACAAACTACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 8:14224/1‑140 (MQ=255)
acggTTGGGCCAGGGTGAAAATCGCCCCATACGTCAGCAATTTACCTTTCTTCTTTTTATAGCGTTCAATAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 6:1106907/135‑1 (MQ=255)
cGTTGTGCCAGGGTGCCAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATc > 4:45434/1‑140 (MQ=255)
tgtgCCTGGGTGACAATCGCCGCAGAAGTGAGCACGTTACCAGTCATCTGTTTATCGCGTCCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc < 2:88515/140‑1 (MQ=255)
tgtgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCt > 6:1012546/1‑138 (MQ=255)
tgtgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc < 4:829426/140‑1 (MQ=255)
tgtgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc < 4:99242/140‑1 (MQ=255)
tgtgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATATGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCCCGCAGTAGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc > 3:848940/1‑140 (MQ=255)
tgggcgaGGGTGCAAAACGCCGCAGACGGGAGCAAGTAACCAGTCATCTGTTGATAGGGGTCACTATACCCGCTGCGGTACACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCt < 6:1045375/132‑1 (MQ=255)
gtgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCtt > 6:697240/1‑138 (MQ=255)
tgCCAGGGTGACAATCGCCGCAGAAGTGCGCAAGTTACCAGTCATCTGTTGATAGCGATCACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCt > 2:1202157/1‑140 (MQ=255)
tgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCt > 8:487110/1‑140 (MQ=255)
gCCTGGGTTCCAATCGCCGAAGAAGTGAGCAAGTTACCAGTCATCTGTTTATAGGGGACACTAAACCCGCTGCCGCAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTcc < 6:499275/138‑1 (MQ=255)
gCCTGGGTTACAATCGCCGCATATGTGAGCAAGTTACCATTCATCTGTTTATCGCGTTCACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTcc < 6:889848/138‑1 (MQ=255)
gCCAGGGTGACAATCGCCGCATATGTTAGCAAGTTACCATTCATCTGTTTATAGGGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTcc < 6:326103/138‑1 (MQ=255)
gCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTTTTGATAGCGTTCACTAAAACCGCTGCCGGAACCAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTcc < 5:859419/138‑1 (MQ=255)
gCCAGGGTGACAATCGCCGAACAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTcc < 6:420857/138‑1 (MQ=255)
ctggggGACAAGCGCCGCAGAAGGTAGCAAGTACCCAGTCATCTGTTGATAGCGTTCACTAAACCCGCGGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 5:353150/136‑1 (MQ=255)
cAGGGTGACAAGCGCCGCAGAAGTTAGCAAGTTCCCAGTCATATGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 6:371597/138‑1 (MQ=255)
aagtgTGAAAATCGCCTCACAAGTCCGCAAGTTACCAGTCAACTCTTGATAGCGTTCACTAAAACCGCTCCCTGAAACAAACGACTCCACGCAGTTGTGATTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 8:626107/136‑1 (MQ=255)
gggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt > 5:235891/1‑138 (MQ=255)
ggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAACCGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCg > 3:110023/1‑140 (MQ=255)
ggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCg > 3:951732/1‑140 (MQ=255)
ggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCg > 1:909570/1‑140 (MQ=255)
tGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGAGTGATGGACCATCTTCCTTCTCCg > 5:627217/1‑138 (MQ=255)
tGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGta < 3:637537/140‑1 (MQ=255)
tGACAATCGCCGCAGAAGTGAGCAAGTTACAAGTCATCTGTTGATAGCGTTCACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGta < 2:464457/140‑1 (MQ=255)
ggACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGta < 4:334518/139‑1 (MQ=255)
aaTCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCaa > 7:745543/1‑106 (MQ=255)
ccgcAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGc > 4:245515/1‑140 (MQ=255)
gctgAAGTTATCAAGTTACCAGTCATCTGTTTATAGCGTTCAATAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGc < 5:665193/135‑1 (MQ=255)
gcATAAGTGAGCAAGTTCCCAGTAATCTGTTGATCGCGTTCACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCaa < 3:923637/140‑1 (MQ=255)
gcAGACTTGAGCAATATACCAGTCTTCGGTTTATAGCTTTCACTACAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCaa < 7:1020248/140‑1 (MQ=255)
cAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGCAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCa < 6:143616/138‑1 (MQ=255)
cAGAAGTGAGCAAGTAACCAGTCTTGTGTTGATTGCGTTCACTAAAACCGCTGCCGGAAACAATCGACTCCACGCAGTTGTGTTTGCCGCAATAGAAACTGACTTATGGACCATCTTCCTGCTCCGTATAGCCTGGCAAc < 7:950840/140‑1 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCACCTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTTGCAACGTGATATg > 4:562258/1‑140 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGTCCATCTTCCTGCTCCGTATAGCCTGGCACCGTGATATg > 2:1020306/1‑140 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 3:130566/1‑140 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 2:992099/1‑140 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGGTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 2:334109/1‑140 (MQ=255)
cAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 5:108427/1‑138 (MQ=255)
gTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGc > 1:512540/1‑140 (MQ=255)
ttACCAGCCAGCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCa < 2:405816/140‑1 (MQ=255)
gTCATCTGTGTATAGCGTGCACTAAAACCGCTCCCGCAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc < 7:347888/140‑1 (MQ=255)
ctCATCTGTTGAACGCGTGCACTAAAACCCCGGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc < 1:947158/139‑1 (MQ=255)
tCATCTGTTGATAGCGTTCACTAAACCCGCTGCCGGAAACAACCGACTCCACGAAGTTGTGTGTGCCGCAATAGCAACTGACTTATGGACCATCTTCCTCCAACGTATAACCTGGAAACGGGATAAGACCGCAATCCgca > 7:1041682/1‑140 (MQ=255)
aTCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTTCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgca > 5:656975/1‑138 (MQ=255)
cTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGAACGAATTCGgcagc > 6:216509/1‑138 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg > 7:562004/1‑90 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTcccc > 3:713551/1‑140 (MQ=255)
ctgggTTCACTAAACCCGCTGCGGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTTATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCa < 1:439618/136‑1 (MQ=255)
gggtacACTAAAACCGCTGCCGTAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 1:75320/135‑1 (MQ=255)
gctttCACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCa < 6:766709/135‑1 (MQ=255)
gCGTTCACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 7:465087/140‑1 (MQ=255)
gCGTTCACTAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 3:164455/140‑1 (MQ=255)
gCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTTCCCAgg < 7:414696/140‑1 (MQ=255)
gCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCa < 5:1031915/138‑1 (MQ=255)
gCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 3:29150/140‑1 (MQ=255)
gCGTTCACAAAAACCGCTGCCGCAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 3:1152746/140‑1 (MQ=255)
gCGTGCACTCAAACCCCTGACGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 8:1073643/140‑1 (MQ=255)
cGTTCACTAAAACCGCTGCCGTAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATTGACCCTCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc < 2:1100694/140‑1 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAact > 1:641426/1‑65 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAact < 2:641426/65‑1 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTAGGCAGCATTTCCCCAGGc > 1:978062/1‑140 (MQ=255)
ttCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACAATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGTccc < 7:548565/140‑1 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGCTGGACCATCTTCCTGCTCCGTATAGACTGGCAACGTGATATGACCGCATTCGGCAGCAGTTCCCCAGGcccc > 3:247635/1‑140 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATTCCCGCATTCGGCAGCATTTCCCCAGGcc > 6:233638/1‑138 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCCGCATTTCCCCAGGcccc > 1:273005/1‑140 (MQ=255)
aCTAAAACCGCTGCCGGAAACAAACGACTCAACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACAGCATTCGGCAGCATTTCCCCAGGCCCCta > 7:197607/1‑140 (MQ=255)
acaCCGCTGCGGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATaaa < 4:1129269/138‑1 (MQ=255)
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TGGTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAAC > NZ_CP022686/2572566‑2572843
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
