Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F12 I0 R1
|
158 |
5737.7 |
7407908 |
98.3% |
7281973 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,572,705 |
A→C |
15.1% |
G191G (GGT→GGG) |
CIW80_RS12885 ← |
ROK family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,572,705 | 0 | A | C | 15.1%
| 310.6
/ 18.8
| 187 | G191G (GGT→GGG) | CIW80_RS12885 | ROK family protein |
| Reads supporting (aligned to +/- strand): ref base A (92/62); new base C (2/30); total (95/92) |
| Fisher's exact test for biased strand distribution p-value = 7.87e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 191 total aligned reads displayed.
GGTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAA > NZ_CP022686/2572567‑2572842
|
ggTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAc > 2:802774/1‑140 (MQ=255)
ggTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAACTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAc > 6:188969/1‑140 (MQ=255)
gTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAcc > 4:46582/1‑140 (MQ=255)
gTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAcc > 1:318849/1‑140 (MQ=255)
gTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAcc > 4:864120/1‑140 (MQ=255)
gTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAcc > 3:406855/1‑140 (MQ=255)
gTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAcc > 3:347531/1‑140 (MQ=255)
tGCCAGCGTGCGGGCNNGNTGTNGGCGAAAANGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAAcc > 7:857576/1‑138 (MQ=255)
tGCCAGCGTGCGGGCAAGCTGTTGGCGCAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCAGCTGTTGATAGCGTTCACTAAAAcc > 8:164673/1‑138 (MQ=255)
ccAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTg > 3:294447/1‑140 (MQ=255)
tggtGTTGGCTAAACCGTGCCACCTGCTGCTTGGCACAAGCATCACCACGTTGGGCCTGGGTGACAATCGCCGCAGAAGTGAGCATGTAACCAGTAATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACACACGa < 6:208389/137‑1 (MQ=255)
gCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGAc > 1:698461/1‑140 (MQ=255)
cgggtGGCTAAAACGTGCAACCTGCTGCCTGGCAAATGCATCACCACGTGGTGCCTGGGTGAAAAGCGCCGCAGATGTGAGCAAGTTACCAGTCATATGTTTAACGCGTTCACTAAACCCGCTGACGGAAACACACGa < 8:312421/134‑1 (MQ=255)
gtcGAAAACGTGCCACCTGCTGCAGGGCACAAGCATCACCACGTTGTGCCAGGGTGACAAGCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTACACTAAACCCGCTGCCGCAAACAAACGACTCCACg < 3:803240/138‑1 (MQ=255)
ggCGAAAACGTGCCACCTGCTGCAGGGCAAAAGAATCACCAGGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGCGCAAGTTACCAGTCATCTGTTGATCGCGTTCACTAAAACCGCTGCCGGAAACACACGACTCCa < 8:677973/138‑1 (MQ=255)
aaCGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTtg > 5:878121/1‑140 (MQ=255)
tGCCCCCTGCTGAATGGCAAAAGCTTCACCCCGGTGTGCCAGGGGGACAAGGGCCGCTGATGTGAGCAAGTTACCAGTAATGTTTTGATCGGGTTCACTAAAACCGCTGCCGTAAACACACGACTCCACGCAGTTGTGtt < 6:732660/140‑1 (MQ=255)
gctgcATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCaa > 4:527337/1‑140 (MQ=255)
ctgcGTGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAAt > 3:507832/1‑140 (MQ=255)
tggaaaaaGCATCCCCTCTTTGTGCGTGGGTTACAATCGCGGCTTATGTGATCATGTAACCCGACAGCTGTATATCGCGTTCACTAAAACGGCTCCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCaa < 2:900288/134‑1 (MQ=255)
gCACAAGCATAACCACGTTGTGCCTGGGTTACAATCGCCGCATAAGTTAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCaa < 8:760856/138‑1 (MQ=255)
cacaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactg > 5:292520/1‑140 (MQ=255)
aaGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACAGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGACGCAATAGCAactgact > 3:263391/1‑140 (MQ=255)
aTCACCACTTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTTATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATg < 2:557062/140‑1 (MQ=255)
aTCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAActgactga > 8:158014/1‑138 (MQ=255)
aTCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATg < 3:915328/140‑1 (MQ=255)
cccccGTTGTGCCTGGGTGAAAAGCCCCGCAGACGTGTGAAATTAACCAGTCATGTGTTGATGGCGTACAATAAACCCGCTCCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 1:393874/136‑1 (MQ=255)
cccacGTTGTGCCAGGGTGAAAATCGCCGCAGAAGTGAGCAAGTTCCCAGTCATCTGTTGATTGCGGTCACTAAAACCGCGGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 4:90722/139‑1 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTTTTTGCCGCAATAGCAACTGACTGATGGAc > 4:334012/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATggcc > 5:712631/1‑138 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 5:407075/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 1:357953/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGACATCTGGTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCAACGCAGTAGTGTTAGCCGCAAGAGCAACTGACTGATGGAc > 4:632838/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTACCAAGTCAGCGGTTGATAGCGTTCACTAAAACCGAGGCCGGAAACAAACGACTCCACGCAGTTTGCTTGGCCGCAAAAGCAAcgtactgagctcc > 6:840189/1‑135 (MQ=255)
acacctttGTTCAAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCCTCTGTTGATAGCGTTCACTAAAACCGATGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 6:382522/134‑1 (MQ=255)
cccGTTGTGCCTGGGTTACAAGCGCCGCATAAGTGAGCTAGTTACCAGTCATCTGTTGATAGCGTTCAAAAAACCCGCGGCGGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 6:135370/138‑1 (MQ=255)
cccGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCCCTAAACCCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 6:823603/138‑1 (MQ=255)
cacGTTGTGCCTGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATGTGTTGATCGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 3:273812/140‑1 (MQ=255)
cacGTTGTGCCTGGGGGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCAATAAACCCGCTGCCGCAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 1:414409/140‑1 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 8:22785/1‑138 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 2:764680/140‑1 (MQ=255)
cacGTTGGGCCAGGGTGACAAGCGCCGCAGAAGTGAGCAAGTAACCAGTCATCTGTGGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 2:776263/140‑1 (MQ=255)
cacGTGGTGCCAGGGGGACAATCGCCGCCGAAGTGAGCAAGTACCCAGTCATCTTTTTATCGCGTTCACAAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 5:360678/140‑1 (MQ=255)
tgtgCCTGGGTGACAAGCGCCGCCTACGTGCTCACGTTCCCCGTCCGCTGTTGATAGCGTTCAATAAACCCGCTGCCGTAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc < 2:531799/140‑1 (MQ=255)
ggtgCCAGGGTGACACTCGCCGCAGAACTGACCCAGGTCCCTGTACTCTGTTTATCGCTGCCATAAACCCCGCTGCCGCAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc < 1:121229/139‑1 (MQ=255)
gCCTGGGTGACAATCGCCGCAGAAGTGAGCATGTTACAAGTCATCTGTTGATAGCGTTCCCTAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 4:75765/140‑1 (MQ=255)
gCCAGGGTTACAATCGCCGCAGAAGTGAGCAATTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCGGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 6:49954/140‑1 (MQ=255)
gCCAGGGTGAAAATCGCCGCAGAAGTGAGCAAGTTACCAGTAATCTGTTTATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 4:69717/140‑1 (MQ=255)
ccttggTGACAATCGCCGATGAAGTGACCACTTTCACAGTCATCTTTTGATTCGGTACAATAAAACCCCTGCCCTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGc < 3:302949/136‑1 (MQ=255)
ccAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCt > 7:290650/1‑138 (MQ=255)
ctgggTGACAATCGCCGCATAAGTGAGCAAGTTACCAGAAATCTTTTGATAGCGTCCAATAAACCCGCGGCCGTAACCAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 1:813468/138‑1 (MQ=255)
cAGGGTTCCAACCGCCGCAGAAGTCAGCAAGTTCCCAGTCAGCTTTTTATAGCGTTCACTAAAACCGATGCCGCAAACAAACGAATCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 7:55737/138‑1 (MQ=255)
cAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCCCTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 4:815608/140‑1 (MQ=255)
ggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCg > 1:21217/1‑140 (MQ=255)
ggACAATCGCCGCCGACGTCCGCAAGTAACCCGTCATCTGTTGATCGCGTGCACTCAACCCCCTGCCGCAACCAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGta < 3:204244/139‑1 (MQ=255)
aCAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGc > 1:462532/1‑64 (MQ=255)
aCAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGtata > 2:678873/1‑140 (MQ=255)
aCAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGtata > 4:671821/1‑140 (MQ=255)
cAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAg < 4:406855/140‑1 (MQ=255)
aaTCGCCGCTGAAGTGAGCATGTTACCTGTCATCTGTTGATCGCTTTCACTAAACCCGCTGCCTGAAACAAACGACTCCACGCAGTTGGGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGc < 2:408489/140‑1 (MQ=255)
aaTCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATTGCGTTCACTAAAACCGCTGCGGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGc < 2:280866/140‑1 (MQ=255)
aaTCGCCGAAGATGTTAGCATTTTACCAGTAATGTTTTGATAGCGTGCACTAAACCCGATGACGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGtata < 8:840835/138‑1 (MQ=255)
gccgcAGATGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTgg < 6:325751/140‑1 (MQ=255)
cccgcAGAAGGGAGAATGTTACCCGTCATCTGTTGATGGGTGTCACTAAACCCGCTGCCGGAACAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCAGCTTCCTGCTCCGTATAGCCt < 7:745977/137‑1 (MQ=255)
ccgcATAAGTGAGAAAGTTACAAGTCATCTGTTGATTCGGTTAATTAAAACCGCTGCCGCAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGc < 5:370878/140‑1 (MQ=255)
ccgcAGAAGTTAGCAAGTAACCAGTCATATGTTTATAGCGATCACTAAACCCGCGGCCGCAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGc < 4:275206/140‑1 (MQ=255)
ccgcAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGc > 1:543867/1‑140 (MQ=255)
gcAGACGTGAGCAAGTTACCAGTCTTCTGTTGTTTGCGTTCACTAAAACCGCTGCCGCAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCaa < 4:72714/140‑1 (MQ=255)
gcAGAAGTTAGAAAGTTACCAGTCATCTGTTGATAGCGTTCAATAAAACCGCGCCCGGAACCAAACGACTCCACGCAGTTGTGTTTGCCGCAATCGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCaa < 6:878406/140‑1 (MQ=255)
tGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGata < 6:90988/140‑1 (MQ=255)
tGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCGGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGa < 8:345830/138‑1 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 2:157704/1‑140 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGGATAGCCTGGCAACGTGAGATg > 2:33326/1‑140 (MQ=255)
gCAAGTTACCAGACATCTTTTTATTGAGTGACATAAAACGGCTGCCGTAAACAAACGACTCCACGCAGTTGTGGTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGatat < 8:615800/138‑1 (MQ=255)
ccAAGTTACCATTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGatat < 8:237340/137‑1 (MQ=255)
cAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATCGCCTGGCAACGTGATATg > 7:487209/1‑138 (MQ=255)
aGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGGTGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGAc > 8:817528/1‑138 (MQ=255)
cgcATCTGTTGATCGCGTCCACAAACCCCGCGGCGGCAACCACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGCCTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc < 5:88304/138‑1 (MQ=255)
aTCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagc > 4:560660/1‑140 (MQ=255)
gcTGTTGATCGCGTCCACTAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagca < 3:714774/139‑1 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACTTGATATGCCCGCATTCGGCAGCATTTaccc > 5:175790/1‑140 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTcccc > 6:126170/1‑140 (MQ=255)
aGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAg > 5:572111/1‑140 (MQ=255)
gCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 2:685227/140‑1 (MQ=255)
gCGTTCACTAAAACCGATGCGGCAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 3:129636/140‑1 (MQ=255)
gCGTTAACTAAACCCGTGGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCa < 8:341226/138‑1 (MQ=255)
gggtCACTAAACCCGCGGCCGGAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc < 3:864120/137‑1 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCaa < 7:233338/63‑1 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc > 1:763327/1‑140 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc > 1:758918/1‑140 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGACAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg > 2:667565/1‑139 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGACAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 1:667565/139‑1 (MQ=255)
gtacaaaaaacCCGCGTCCGGAAAAACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGcc < 1:100671/133‑1 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACTCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCATGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGAcccc > 4:34780/1‑140 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg > 1:944204/1‑136 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 2:944204/136‑1 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCAAGGcccc > 5:252389/1‑140 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTACTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGcccc > 3:161529/1‑140 (MQ=255)
aCTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGGTGTGTTTGCCGCAATAGCAACTGACTGATGGACAATATTCCTGCTCCGTATAGCCTGGAAACGTGATATGACCGCATTCGGCAGCATTGACCCAGTcccc > 7:377781/1‑138 (MQ=255)
aaaCCGCTGCCGGAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCtata < 7:329843/138‑1 (MQ=255)
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GGTTGCCAGCGTGCGGGCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAA > NZ_CP022686/2572567‑2572842
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
